{ "uniprot_canonical_ac": "A0A8I5ZPQ6-1", "uniprot_ac": "A0A8I5ZPQ6", "uniprot_id": "A0A8I5ZPQ6_RAT", "mass": { "chemical_mass": 93055.0, "monoisotopic_mass": 93055.0 }, "refseq": { "ac": "XP_006252128", "name": "intraflagellar transport protein 88 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_006252128" }, "gene_names": [ { "name": "Ift88", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6", "id": "A0A8I5ZPQ6" }, { "name": "Ift88", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_006252132", "id": "XP_006252132" }, { "name": "Ttc10", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_006252132", "id": "XP_006252132" } ], "protein_names": [ { "name": "Intraflagellar transport 88", "resource": "UniProtKB", "type": "synonym", "url": "", "id": "A0A8I5ZPQ6" }, { "name": "intraflagellar transport protein 88 homolog isoform X1", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_006252128", "id": "XP_006252128" }, { "name": "intraflagellar transport protein 88 homolog isoform X2", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_006252132", "id": "XP_006252132" } ], "function": [], "disease": [ { "disease_id": "DOID:0110861", "recommended_name": { "id": "DOID:0110861", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:0110861", "name": "autosomal recessive polycystic kidney disease", "description": "A polycystic kidney disease characterized by the presence of multiple cysts located_in the kidney resulting from ciliopathy that disrupts the function of primary cilium, inherited in an autosomal recessive fashion." }, "synonyms": [ { "id": "DOID:0110861", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:0110861", "name": "Arpkd", "description": "" }, { "id": "DOID:0110861", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:0110861", "name": "Pkhd1", "description": "" }, { "id": "DOID:0110861", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:0110861", "name": "Polycystic Kidney Disease, Infantile, Type I", "description": "" }, { "id": "DOID:0110861", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:0110861", "name": "Polycystic Kidney and Hepatic Disease 1", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "polycystic kidney disease 4", "description": "A autosomal dominant polycystic kidney disease that has material basis in mutation in the PKD4 gene." }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "polycystic kidney disease 4", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "polycystic kidney disease 4, with or without hepatic disease", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "PKD3", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "PKD3, formerly", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "PKD4", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "hepatic fibrosis, congenital", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "polycystic kidney and hepatic disease 1", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "polycystic kidney disease 4 with or without hepatic disease", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "polycystic kidney disease 4 with or without polycystic liver disease", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "polycystic kidney disease, autosomal recessive", "description": "" }, { "id": "MONDO:0033004", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0033004", "name": "polycystic kidney disease, infantile, type 1", "description": "" }, { "id": "MIM:263200", "resource": "MIM", "url": "https://www.omim.org/entry/263200", "name": "Polycystic kidney disease 4, with or without polycystic liver disease", "description": "Polycystic kidney disease 4, with or without polycystic liver disease" } ], "evidence": [ { "id": "0110861", "database": "Alliance of Genome Resources", "url": "https://www.alliancegenome.org/disease/DOID:0110861" } ] }, { "disease_id": "DOID:10325", "recommended_name": { "id": "DOID:10325", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:10325", "name": "silicosis", "description": "A pneumoconiosis that is an inflammation and scarring of the uper lobes of the lungs causing nodular lesions resulting from inhalation of silica, quartz or slate particles." }, "synonyms": [ { "id": "DOID:10325", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:10325", "name": "Pneumoconiosis due to silicates", "description": "" }, { "id": "DOID:10325", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:10325", "name": "Silica pneumoconiosis", "description": "" }, { "id": "DOID:10325", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:10325", "name": "Silicotic fibrosis of lung", "description": "" }, { "id": "DOID:10325", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:10325", "name": "silicotuberculosis", "description": "" } ], "evidence": [ { "id": "10325", "database": "Alliance of Genome Resources", "url": "https://www.alliancegenome.org/disease/DOID:10325" } ] }, { "disease_id": "DOID:61", "recommended_name": { "id": "DOID:61", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:61", "name": "mitral valve disease", "description": "" }, "synonyms": [ { "id": "DOID:61", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:61", "name": "Mitral RH valve dis.", "description": "" }, { "id": "DOID:61", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:61", "name": "Rheumatic mitral insufficiency", "description": "" }, { "id": "DOID:61", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:61", "name": "Rheumatic mitral valve changes", "description": "" }, { "id": "DOID:61", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:61", "name": "Rheumatic mitral valve regurgitation", "description": "" }, { "id": "DOID:61", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:61", "name": "chronic rheumatic mitral valve", "description": "" }, { "id": "DOID:61", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:61", "name": "disease of mitral valve", "description": "" }, { "id": "DOID:61", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:61", "name": "rheumatic disease of mitral valve", "description": "" }, { "id": "DOID:61", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:61", "name": "rheumatic mitral valve incompetence", "description": "" } ], "evidence": [ { "id": "61", "database": "Alliance of Genome Resources", "url": "https://www.alliancegenome.org/disease/DOID:61" } ] }, { "disease_id": "DOID:898", "recommended_name": { "id": "DOID:898", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:898", "name": "autosomal dominant polycystic kidney disease", "description": "A polycystic kidney disease characterized by the presence of multiple cysts located_in the kidney resulting from ciliopathy that disrupts the function of primary cilium, inherited in an autosomal dominant fashion." }, "synonyms": [ { "id": "DOID:898", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:898", "name": "Congenital biliary ectasias", "description": "" }, { "id": "DOID:898", "resource": "Disease Ontology", "url": "http://disease-ontology.org/term/DOID:898", "name": "POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1", "description": "" } ], "evidence": [ { "id": "898", "database": "Alliance of Genome Resources", "url": "https://www.alliancegenome.org/disease/DOID:898" } ] } ], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "common_name": "Rat" } ], "gene": [ { "name": "Ift88", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6", "locus": { "chromosome": "15", "start_pos": 31672147, "end_pos": 31573376, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSRNOG00000009278", "url": "https://www.ensembl.org/id/ENSRNOG00000009278" } ] } } ], "crossref": [ { "id": "ENSRNOG00000009278", "url": "https://bgee.org/?page=gene&gene_id=ENSRNOG00000009278", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "305918", "url": "https://www.ncbi.nlm.nih.gov/gene/305918", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "rno:305918", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+rno:305918", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RIKIMHN", "url": "https://omabrowser.org/oma/group/RIKIMHN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "312444at2759", "url": "http://www.orthodb.org/?query=312444at2759", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44117", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44117", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44117:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44117:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12895", "url": "http://pfam.xfam.org/family/PF12895", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF13174", "url": "http://pfam.xfam.org/family/PF13174", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF13181", "url": "http://pfam.xfam.org/family/PF13181", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF13424", "url": "http://pfam.xfam.org/family/PF13424", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-5610787", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-5610787", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-5620924", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-5620924", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-9646399", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-9646399", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "XP_006252128", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_006252128", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "1309717", "url": "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=1309717", "database": "RGD", "categories": [ "Organism-specific" ] }, { "id": "A0A096MJ06", "url": "https://www.uniprot.org/uniprot/A0A096MJ06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A096MJ06-1", "url": "https://www.uniprot.org/uniprot/A0A096MJ06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A096MJE9", "url": "https://www.uniprot.org/uniprot/A0A096MJE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A096MJE9-1", "url": "https://www.uniprot.org/uniprot/A0A096MJE9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A096MK92", "url": "https://www.uniprot.org/uniprot/A0A096MK92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A096MK92-1", "url": "https://www.uniprot.org/uniprot/A0A096MK92-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8I5ZPQ6-1", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "D4ACI9", "url": "https://www.uniprot.org/uniprot/D4ACI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "D4ACI9-1", "url": "https://www.uniprot.org/uniprot/D4ACI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRPIATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEAKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENINLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGLKEVQEYATKLKRLEKMKEMREQRIKSGRDSGGGSRSKREGSAGSDSGQNSSASSKSERLSAKLRALPGTDEPYESSGNKEIDASYVDPLGPQIERPKTAARKRIDEDDFADEELGDDLLPE", "length": 825, "header": "tr|A0A8I5ZPQ6-1|A0A8I5ZPQ6_RAT Isoform 1 of Intraflagellar transport 88 OS=Rattus norvegicus OX=10116 GN=Ift88 PE=4 SV=1 CANONICAL=A0A8I5ZPQ6-1" }, "isoforms": [ { "isoform_ac": "A0A096MJ06-1", "url": "", "sequence": { "sequence": "MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRPIATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEAKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENINLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGLKEVQEYATKLKRLEKMKEMREQVLPQHESVLADIILPIGQSLKKRQEATSTPPEVLSVSMESRQTELNSAV", "length": 775, "header": "tr|A0A096MJ06-1|A0A8I5ZPQ6_RAT Computationally mapped isoform of Intraflagellar transport 88 OS=Rattus norvegicus OX=10116 GN=Ift88 PE=4 SV=2 CANONICAL=A0A8I5ZPQ6-1" }, "locus": { "chromosome": "15", "start_pos": 31650260, "end_pos": 31579175, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000076839.2", "url": "https://www.ensembl.org/id/ENSRNOT00000076839.2" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000067945.2", "url": "https://www.ensembl.org/id/ENSRNOP00000067945.2" } ] } }, { "isoform_ac": "A0A096MJE9-1", "url": "", "sequence": { "sequence": "MGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWL", "length": 164, "header": "tr|A0A096MJE9-1|A0A8I5ZPQ6_RAT Computationally mapped isoform of Intraflagellar transport 88 OS=Rattus norvegicus OX=10116 GN=Ift88 PE=4 SV=2 CANONICAL=A0A8I5ZPQ6-1" }, "locus": { "chromosome": "15", "start_pos": 31625225, "end_pos": 31597117, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000076741.3", "url": "https://www.ensembl.org/id/ENSRNOT00000076741.3" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000068104.2", "url": "https://www.ensembl.org/id/ENSRNOP00000068104.2" } ] } }, { "isoform_ac": "A0A096MK92-1", "url": "", "sequence": { "sequence": "MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEAK", "length": 110, "header": "tr|A0A096MK92-1|A0A8I5ZPQ6_RAT Computationally mapped isoform of Intraflagellar transport 88 OS=Rattus norvegicus OX=10116 GN=Ift88 PE=4 SV=2 CANONICAL=A0A8I5ZPQ6-1" }, "locus": { "chromosome": "15", "start_pos": 31589939, "end_pos": 31579175, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000076608.3", "url": "https://www.ensembl.org/id/ENSRNOT00000076608.3" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000068425.2", "url": "https://www.ensembl.org/id/ENSRNOP00000068425.2" } ] } }, { "isoform_ac": "A0A8I5ZPQ6-1", "url": "", "sequence": { "sequence": "MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRPIATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEAKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENINLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGLKEVQEYATKLKRLEKMKEMREQRIKSGRDSGGGSRSKREGSAGSDSGQNSSASSKSERLSAKLRALPGTDEPYESSGNKEIDASYVDPLGPQIERPKTAARKRIDEDDFADEELGDDLLPE", "length": 825, "header": "tr|A0A8I5ZPQ6-1|A0A8I5ZPQ6_RAT Isoform 1 of Intraflagellar transport 88 OS=Rattus norvegicus OX=10116 GN=Ift88 PE=4 SV=1 CANONICAL=A0A8I5ZPQ6-1" }, "locus": { "chromosome": "15", "start_pos": 31665546, "end_pos": 31579175, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000118046.1", "url": "https://www.ensembl.org/id/ENSRNOT00000118046.1" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000078923.1", "url": "https://www.ensembl.org/id/ENSRNOP00000078923.1" } ] } }, { "isoform_ac": "D4ACI9-1", "url": "", "sequence": { "sequence": "MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRPIATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEAKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENINLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVSSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGLKEVQEYATKLKRLEKMKEMREQRIKSGRDSGGGSRSKREGSAGSDASYVDPLGPQIERPKTAARKRIDEDDFADEELGDDLLPE", "length": 788, "header": "tr|D4ACI9-1|A0A8I5ZPQ6_RAT Computationally mapped isoform of Intraflagellar transport 88 OS=Rattus norvegicus OX=10116 GN=Ift88 PE=4 SV=2 CANONICAL=A0A8I5ZPQ6-1" }, "locus": { "chromosome": "15", "start_pos": 31665546, "end_pos": 31579175, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000012988.8", "url": "https://www.ensembl.org/id/ENSRNOT00000012988.8" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000012988.5", "url": "https://www.ensembl.org/id/ENSRNOP00000012988.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "rno:305918", "name": "", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+rno:305918", "resource": "KEGG Pathway" }, { "id": "R-RNO-5610787", "name": "Hedgehog 'off' state", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-5610787", "resource": "Reactome", "description": "Hedgehog 'off' state" }, { "id": "R-RNO-5620924", "name": "Intraflagellar transport", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-5620924", "resource": "Reactome", "description": "Intraflagellar transport" }, { "id": "R-RNO-9646399", "name": "Aggrephagy", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-9646399", "resource": "Reactome", "description": "Aggrephagy" } ], "orthologs": [ { "uniprot_canonical_ac": "Q13099-2", "protein_name": "Intraflagellar transport protein 88 homolog", "gene_name": "IFT88", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMQNVHLAPETDEDDLYSGYNDYNPIYDIEELENDAAFQQAVRTSHGRRPPITAKISSTAVTRPIATGYGSKTSLASSIGRPMTGAIQDGVTRPMTAVRAAGFTKAALRGSAFDPLSQSRGPASPLEAKKKDSPEEKIKQLEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTTPENINLDLTYSVLFNLASQYSVNEMYAEALNTYQVIVKNKMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTICYFAIGDREKMKKAFQKLITVPLEIDEDKYISPSDDPHTNLVTEAIKNDHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLCTDLGLKDAQEYARKLKRLEKMKEIREQRIKSGRDGSGGSRGKREGSASGDSGQNYSASSKGERLSARLRALPGTNEPYESSSNKEIDASYVDPLGPQIERPKTAAKKRIDEDDFADEELGDDLLPE", "length": 824 }, "evidence": [ { "id": "45226174", "url": "http://www.informatics.jax.org/homology/45226174", "database": "MGI" } ], "common_name": "Human" }, { "uniprot_canonical_ac": "Q61371-1", "protein_name": "Intraflagellar transport protein 88 homolog", "gene_name": "Ift88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVSRPIATGYGSKTSLTSSMGRPMTGTIQDGVARPMTAVRAAGFSKAALRGSAFDPLGQSRGPAPPLEAKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTSPENINLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMSMAPSLKAGFNLILSCFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVNSDRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALDSFLKLHAILRNSAQVLCQIANIYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGLKEVQEYATKLKRLEKMKEMREQRIKSGRDSSGGSRSKREGSAGSDSGQNNSASSKSERLSAKLRALPGTDEPYESSGNKEIDASYVDPLGPQIERPKTAAKKRIDEDDFADEELGDDLLPE", "length": 824 }, "evidence": [ { "id": "45226174", "url": "http://www.informatics.jax.org/homology/45226174", "database": "MGI" } ], "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 52, "go_terms": [ { "name": "spinal cord dorsal/ventral patterning", "id": "GO:0021513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021513", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "response to silicon dioxide", "id": "GO:0034021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034021", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "liver development", "id": "GO:0001889", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001889", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "Notch signaling pathway", "id": "GO:0007219", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007219", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "heart development", "id": "GO:0007507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007507", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "forebrain development", "id": "GO:0030900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030900", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "kidney development", "id": "GO:0001822", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001822", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "epidermis development", "id": "GO:0008544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008544", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "lung development", "id": "GO:0030324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030324", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "negative regulation of epithelial cell proliferation", "id": "GO:0050680", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050680", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "animal organ morphogenesis", "id": "GO:0009887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009887", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "anterior/posterior pattern specification", "id": "GO:0009952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009952", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "pancreas development", "id": "GO:0031016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031016", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "regulation of feeding behavior", "id": "GO:0060259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060259", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "negative regulation of keratinocyte proliferation", "id": "GO:0010839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010839", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "determination of left/right symmetry", "id": "GO:0007368", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007368", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "limb development", "id": "GO:0060173", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060173", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "cardiac muscle cell differentiation", "id": "GO:0055007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055007", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "positive regulation of insulin-like growth factor receptor signaling pathway", "id": "GO:0043568", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043568", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "dorsal/ventral pattern formation", "id": "GO:0009953", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009953", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "embryonic digit morphogenesis", "id": "GO:0042733", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042733", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "response to fluid shear stress", "id": "GO:0034405", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034405", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "smoothened signaling pathway", "id": "GO:0007224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007224", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "non-motile cilium assembly", "id": "GO:1905515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905515", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "intraciliary transport", "id": "GO:0042073", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042073", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "endothelial cell morphogenesis", "id": "GO:0001886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001886", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "regulation of cilium assembly", "id": "GO:1902017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902017", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "cilium movement", "id": "GO:0003341", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003341", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "epidermal stem cell homeostasis", "id": "GO:0036334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036334", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "neural precursor cell proliferation", "id": "GO:0061351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061351", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "lung vasculature development", "id": "GO:0060426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060426", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "forebrain morphogenesis", "id": "GO:0048853", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048853", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "regulation of autophagosome assembly", "id": "GO:2000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000785", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "eye development", "id": "GO:0001654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001654", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "regulation of fat cell differentiation", "id": "GO:0045598", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045598", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "sperm axoneme assembly", "id": "GO:0007288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007288", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "cardiac septum morphogenesis", "id": "GO:0060411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060411", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "telencephalon development", "id": "GO:0021537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021537", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "regulation of odontogenesis of dentin-containing tooth", "id": "GO:0042487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042487", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5ZPQ6", "url": "https://www.uniprot.org/uniprot/A0A8I5ZPQ6" } ], "pmid": "" }, { "name": "heart formation", "id": "GO:0060914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060914", 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