{ "uniprot_canonical_ac": "A0A0G2K557-1", "uniprot_ac": "A0A0G2K557", "uniprot_id": "A0A0G2K557_RAT", "mass": { "chemical_mass": 65410.0, "monoisotopic_mass": 65410.0 }, "refseq": {}, "gene_names": [ { "name": "Phf1", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/A0A0G2K557", "id": "A0A0G2K557" } ], "protein_names": [ { "name": "PHD finger protein 1", "resource": "UniProtKB", "type": "synonym", "url": "", "id": "A0A0G2K557" } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "common_name": "Rat" } ], "gene": [ { "name": "Phf1", "url": "https://www.uniprot.org/uniprot/A0A0G2K557", "locus": { "chromosome": "20", "start_pos": 5022871, "end_pos": 5017893, "strand": "-", "evidence": [ { "database": "Ensembl 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"categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047399", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047399", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CAGPGWN", "url": "https://omabrowser.org/oma/group/CAGPGWN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12628", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12628", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12628:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12628:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "http://pfam.xfam.org/family/PF00628", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF14061", "url": "http://pfam.xfam.org/family/PF14061", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF18104", "url": "http://pfam.xfam.org/family/PF18104", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "1303205", "url": "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=1303205", "database": "RGD", "categories": [ "Organism-specific" ] }, { "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A0G2K557-1", "url": "https://www.uniprot.org/uniprot/A0A0G2K557-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F7ELX2", "url": "https://www.uniprot.org/uniprot/F7ELX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F7ELX2-1", "url": "https://www.uniprot.org/uniprot/F7ELX2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q5XI49", "url": "https://www.uniprot.org/uniprot/Q5XI49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q5XI49-1", "url": "https://www.uniprot.org/uniprot/Q5XI49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQLPRLSRLGAPSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGSSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGGPEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRKCLFGLHARTPPPVELLTGDGSPTRSLVQGGWGKFSRICLEGTCTENGGLGCLGGGWGDKEASYSFPSGQGPGGGVSRPLGKRRKSEPEPLRRRQKGKVEELGPPTAAHSRHGSQEQRALQASESPPPPSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSEPPDRSPLELHIGFPTDIPKSSPHSVTASSSSVPALTPGLSRHSLPPSPLCRSLSPGTGGGVRGGVSYLSRGDPVRVLARRVRPDGSVQYLVEWGGGGIF", "length": 600, "header": "tr|A0A0G2K557-1|A0A0G2K557_RAT Isoform 1 of PHD finger protein 1 OS=Rattus norvegicus OX=10116 GN=Phf1 PE=3 SV=1 CANONICAL=A0A0G2K557-1" }, "isoforms": [ { "isoform_ac": "A0A0G2K557-1", "url": "", "sequence": { "sequence": "MAQLPRLSRLGAPSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGSSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGGPEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRKCLFGLHARTPPPVELLTGDGSPTRSLVQGGWGKFSRICLEGTCTENGGLGCLGGGWGDKEASYSFPSGQGPGGGVSRPLGKRRKSEPEPLRRRQKGKVEELGPPTAAHSRHGSQEQRALQASESPPPPSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPSASTAGTSGDSEPPDRSPLELHIGFPTDIPKSSPHSVTASSSSVPALTPGLSRHSLPPSPLCRSLSPGTGGGVRGGVSYLSRGDPVRVLARRVRPDGSVQYLVEWGGGGIF", "length": 600, "header": "tr|A0A0G2K557-1|A0A0G2K557_RAT Isoform 1 of PHD finger protein 1 OS=Rattus norvegicus OX=10116 GN=Phf1 PE=3 SV=1 CANONICAL=A0A0G2K557-1" }, "locus": { "chromosome": "20", "start_pos": 5022555, "end_pos": 5018999, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000091364.2", "url": "https://www.ensembl.org/id/ENSRNOT00000091364.2" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000073301.2", "url": "https://www.ensembl.org/id/ENSRNOP00000073301.2" } ] } }, { "isoform_ac": "F7ELX2-1", "url": "", "sequence": { "sequence": "MTPDSIMLLLLTISCSSRVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRKCLFGLHARTPPPVELLTGDGSPTSSPIRMFASFHPSASTAGTSGDSEPPDRSPLELHIGFPTDIPKSSPHSVTASSSSVPALTPGLSRHSLPPSPLCRSLSPGTGGGVRGGVSYLSRGDPVRVLARRVRPDGSVQYLVEWGGGGIF", "length": 239, "header": "tr|F7ELX2-1|A0A0G2K557_RAT Computationally mapped isoform of PHD finger protein 1 OS=Rattus norvegicus OX=10116 GN=Phf1 PE=3 SV=1 CANONICAL=A0A0G2K557-1" }, "locus": { "chromosome": "20", "start_pos": 5022555, "end_pos": 5020675, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000059548.4", "url": "https://www.ensembl.org/id/ENSRNOT00000059548.4" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000056303.4", "url": "https://www.ensembl.org/id/ENSRNOP00000056303.4" } ] } }, { "isoform_ac": "Q5XI49-1", "url": "", "sequence": { "sequence": "MAQLPRLSRLGAPSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGSSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGGPEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRKCLFGLHARTPPPVELLTGDGSPTRAGPWGRGLTSPGETPEVGARTLEEEAEGESGGTGATHSSSQSAWVPGAEGPAGLRVSTTPQP", "length": 412, "header": "tr|Q5XI49-1|A0A0G2K557_RAT Computationally mapped isoform of PHD finger protein 1 OS=Rattus norvegicus OX=10116 GN=Phf1 PE=3 SV=1 CANONICAL=A0A0G2K557-1" }, "locus": { "chromosome": "20", "start_pos": 5021613, "end_pos": 5018999, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000092247.2", "url": "https://www.ensembl.org/id/ENSRNOT00000092247.2" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000075915.1", "url": "https://www.ensembl.org/id/ENSRNOP00000075915.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "histone methyltransferase binding", "id": "GO:1990226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990226", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "methylated histone binding", "id": "GO:0035064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035064", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "transcription corepressor binding", "id": "GO:0001222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001222", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "ESC/E(Z) complex", "id": "GO:0035098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035098", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" }, { "name": "DNA repair-dependent chromatin remodeling", "id": "GO:0140861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140861", "evidence": [ { "database": "UniProtKB", "id": "A0A0G2K557", "url": "https://www.uniprot.org/uniprot/A0A0G2K557" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "synthesized_glycans": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { 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