{ "uniprot_canonical_ac": "Q4W6B5-1", "uniprot_ac": "Q4W6B5", "uniprot_id": "MPPB_DICDI", "mass": { "chemical_mass": 52626.0, "monoisotopic_mass": 52626.0 }, "refseq": { "ac": "XP_001134518", "name": "mitochondrial processing peptidase beta subunit", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001134518" }, "gene_names": [ { "name": "mppB", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/Q4W6B5", "id": "Q4W6B5" }, { "name": "DDB_G0288777", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprot/Q4W6B5", "id": "Q4W6B5" }, { "name": "mppB", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001134518", "id": "XP_001134518" } ], "protein_names": [ { "name": "Mitochondrial-processing peptidase subunit beta", "resource": "UniProtKB", "type": "recommended", "url": "", "id": "Q4W6B5" }, { "name": "3.4.24.64", "resource": "UniProtKB", "type": "synonym", "url": "", "id": "Q4W6B5" }, { "name": "Beta-MPP", "resource": "UniProtKB", "type": "synonym", "url": "", "id": "Q4W6B5" }, { "name": "mitochondrial processing peptidase beta subunit", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001134518", "id": "XP_001134518" } ], "function": [ { "annotation": "Catalytic subunit of the essential mitochondrial processing protease (MPP), which cleaves the mitochondrial sequence off newly imported precursors proteins (Probable). Preferentially, cleaves after an arginine at position P2 (By similarity). Plays an essential role in mitochondrial biogenesis (PubMed:18603769).", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5#function" }, { "database": "PubMed", "id": "18603769", "url": "https://glygen.org/publication/PubMed/18603769" }, { "database": "UniProtKB", "id": "Q03346", "url": "https://www.uniprot.org/uniprot/Q03346#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Dictyostelium discoideum", "taxid": 44689, "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "common_name": "Dictyostelium discoideum" } ], "gene": [ { "name": "mppB", "url": "https://www.uniprot.org/uniprot/Q4W6B5", "locus": {} } ], "crossref": [ { "id": "DDB_G0288777", "url": "", "database": "", "categories": [ "Organism-specific" ] }, { "id": "8626796", "url": "https://www.ncbi.nlm.nih.gov/gene/8626796", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001431", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001431", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ddi:DDB_G0288777", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+ddi:DDB_G0288777", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IDVVCDM", "url": "https://omabrowser.org/oma/group/IDVVCDM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11851", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11851", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11851:SF149", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11851:SF149", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00675", "url": "http://pfam.xfam.org/family/PF00675", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF05193", "url": "http://pfam.xfam.org/family/PF05193", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PR_Q4W6B5", "url": "http://purl.obolibrary.org/obo/PR_Q4W6B5", "database": "PRO", "categories": [ "Protein" ] }, { "id": "R-DDI-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-DDI-611105", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "XP_001134518", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001134518", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q4W6B5-1", "url": "https://www.uniprot.org/uniprot/Q4W6B5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNITKLFVKSTKNFSRSFSRKTVDPSYLKISPETKITTLSNGIRVATEQTYGEVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFETSLIEQERDTILSENDYIQSKEDEVVFDQLHAAAFQGSALGRTILGPVENIKSITREQIQEFINENYTGDRLVISAAGAVNHEQLVEQVKEKFANVKMSQVSKDVKRAAITNDFIGSELRVRDDEQPLIHFAVAVRALPWTDPDYFVLELIQTMIGNWNRGIAAGKNIASNLGEIVATEDLAESYSTFFTCYQDTGLFGNYGVCQPERVDDLVAEMLKEWQRIATSCNKNEVERNKQKLLATTLMQYDGTSKVCEGIGRQILTLGRRLSPFEVYTRINEITVADVQRVASTLLRDVSPAVTAIGPIANYPDYNFVKGWTYWNRL", "length": 469, "header": "sp|Q4W6B5-1|MPPB_DICDI Isoform 1 of Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum OX=44689 GN=mppB PE=1 SV=1 CANONICAL=Q4W6B5-1" }, "isoforms": [ { "isoform_ac": "Q4W6B5-1", "url": "", "sequence": { "sequence": "MSNITKLFVKSTKNFSRSFSRKTVDPSYLKISPETKITTLSNGIRVATEQTYGEVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFETSLIEQERDTILSENDYIQSKEDEVVFDQLHAAAFQGSALGRTILGPVENIKSITREQIQEFINENYTGDRLVISAAGAVNHEQLVEQVKEKFANVKMSQVSKDVKRAAITNDFIGSELRVRDDEQPLIHFAVAVRALPWTDPDYFVLELIQTMIGNWNRGIAAGKNIASNLGEIVATEDLAESYSTFFTCYQDTGLFGNYGVCQPERVDDLVAEMLKEWQRIATSCNKNEVERNKQKLLATTLMQYDGTSKVCEGIGRQILTLGRRLSPFEVYTRINEITVADVQRVASTLLRDVSPAVTAIGPIANYPDYNFVKGWTYWNRL", "length": 469, "header": "sp|Q4W6B5-1|MPPB_DICDI Isoform 1 of Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum OX=44689 GN=mppB PE=1 SV=1 CANONICAL=Q4W6B5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "The genome of the social amoeba Dictyostelium discoideum.", "journal": "Nature", "date": "2005", "authors": "Chen G., Gibbs R.A., Gloeckner G., Hernandez J., Johnson D., Knights A., Lehmann R., Loulseged H., Ma J., Muzny D.M., Oliver K., Platzer M., Rosenthal A., Saito T., Sodergren E., Steffen D., Sugano S., Walker D., Weinstock G., Lu M., Muzny D., Tanaka Y., Song J., Sodergren E.J., Xu Q., Bankier A.T., Barrell B.G., Williams J., Fey P., Nie X., Gibbs R., Dear P.H., Szafranski K., Davies R., Price C., James K., Noegel A.A., Glockner G., Cooper J., Morio T., Davis P., Williams J.G., Kay R.R., Cronin A., Schleicher M., Olsen R., Kummerfeld S., Sharp S., Hauser H., Weinstock G.M., White B., Quiles M., Rost R., Tunggal B., Pain A., Madan Babu M., Madera M., Rivero F., Saunders D., Eichinger L., Sanders M., Kohara Y., Chisholm R.L., Barrell B., Churcher C.M., Hamlin N., Rajandream M.A., Thangavelu M., Quail M.A., Anjard C., Cox E.C., Haydock S., Kuspa A., Loomis W.F., Shaulsky G., Sucgang R., Urushihara H., Bason N., Berriman M., Buchrieser C., Churcher C., Desany B., Farbrother P., Felder M., Gaudet P., Goodhead I., Hall N., Harper D., Hemphill L., James K.D., Just E., Kerhornou A., Konfortov B.A., Lindsay R., Mourier T., Mungall K., Mungall K.L., Pachebat J.A., Pilcher K., Rabbinowitsch E., Simmonds M., Simmonds M.N., Spiegler S., Tivey A., Wardroper A., Winckler T., Woodward J., Woodward J.R., van Driessche N.", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "reference": [ { "type": "PubMed", "id": "15875012", "url": "https://glygen.org/publication/PubMed/15875012" } ] }, { "title": "Proteomics fingerprinting of phagosome maturation and evidence for the role of a Galpha during uptake.", "journal": "Mol. Cell. Proteomics", "date": "2006", "authors": "Ruppert T., Delorenzi M., Gotthardt D., Soldati T., Blancheteau V., Bosserhoff A.", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "reference": [ { "type": "PubMed", "id": "16926386", "url": "https://glygen.org/publication/PubMed/16926386" } ] }, { "title": "Dictyostelium transcriptional responses to Pseudomonas aeruginosa: common and specific effects from PAO1 and PA14 strains.", "journal": "BMC Microbiol.", "date": "2008", "authors": "Skelton J., Kay R.R., Ivens A., Calvo-Garrido J., Carilla-Latorre S., Escalante R., Bloomfield G., Martinez J.L.", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "reference": [ { "type": "PubMed", "id": "18590548", "url": "https://glygen.org/publication/PubMed/18590548" } ] }, { "title": "Antisense RNA inhibition of the beta subunit of the Dictyostelium discoideum mitochondrial processing peptidase induces the expression of mitochondrial proteins.", "journal": "Biosci. Biotechnol. Biochem.", "date": "2008", "authors": "Yoshida T., Nagayama K., Ishiguro S., Ochiai H., Itono S., Ohmachi T.", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "reference": [ { "type": "PubMed", "id": "18603769", "url": "https://glygen.org/publication/PubMed/18603769" } ] } ], "pathway": [ { "id": "ddi:DDB_G0288777", "name": "", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+ddi:DDB_G0288777", "resource": "KEGG Pathway" }, { "id": "R-DDI-611105", "name": "Respiratory electron transport", "url": "https://www.reactome.org/PathwayBrowser/#R-DDI-611105", "resource": "Reactome", "description": "Respiratory electron transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" }, { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" }, { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" }, { "name": "vesicle", "id": "GO:0031982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031982", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" }, { "name": "mitochondrial processing peptidase complex", "id": "GO:0017087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017087", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein processing involved in protein targeting to mitochondrion", "id": "GO:0006627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006627", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" }, { "name": "mitochondria-nucleus signaling pathway", "id": "GO:0031930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031930", "evidence": [ { "database": "UniProtKB", "id": "Q4W6B5", "url": "https://www.uniprot.org/uniprot/Q4W6B5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-DDI-164651", "name": "Electron transfer from ubiquinol to cytochrome c of complex III", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial inner membrane", "input_participant_list": [], "output_participant_list": [ "R-ALL-73663", "R-ALL-76633", "R-ALL-163953" ], "enzyme_list": [ "Q54NW9-1", "Q4W6B5-1", "Q54D07-1" ], "evidence": [ { "id": "R-DDI-164651", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-DDI-164651" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-163953", "participant_name": "H+ [mitochondrial intermembrane space]", "crossref": [ { "id": "C00080", "database": "COMPOUND", "url": "" }, { "id": "15378", "database": "ChEBI", "url": "" }, { "id": "HMDB0059597", "database": "HMDB Metabolite", "url": "" }, { "id": "8145820", "database": "PubChem Substance", "url": "" }, { "id": "C00080", "database": "COMPOUND", "url": "" }, { "id": "15378", "database": "ChEBI", "url": "" }, { "id": "HMDB0059597", "database": "HMDB Metabolite", "url": "" }, { "id": "8145820", "database": "PubChem Substance", "url": "" }, { "id": "HMDB0059597", "database": "HMDB Metabolite", "url": "" }, { "id": "C00080", "database": "COMPOUND", "url": "" }, { "id": "8145820", "database": "PubChem Substance", "url": "" }, { "id": "15378", "database": "ChEBI", "url": "" }, { "id": "C00080", "database": "COMPOUND", "url": "" }, { "id": "15378", "database": "ChEBI", "url": "" }, { "id": "HMDB0059597", "database": "HMDB Metabolite", "url": "" }, { "id": "8145820", "database": "PubChem Substance", "url": "" }, { "id": "C00080", "database": "COMPOUND", "url": "" }, { "id": "15378", "database": "ChEBI", "url": "" }, { "id": "HMDB0059597", "database": "HMDB Metabolite", "url": "" }, { "id": "8145820", "database": "PubChem Substance", "url": "" }, { "id": "C00080", "database": "COMPOUND", "url": "" }, { "id": "15378", "database": "ChEBI", "url": "" }, { "id": "HMDB0059597", "database": "HMDB Metabolite", "url": "" }, { "id": "8145820", "database": "PubChem Substance", "url": "" } ] }, { "participant_id": "R-ALL-73663", "participant_name": "CoQ [mitochondrial inner membrane]", "crossref": [ { "id": "C00399", "database": "COMPOUND", "url": "" }, { "id": "46245", "database": "ChEBI", "url": "" }, { "id": "HMDB0001072", "database": "HMDB Metabolite", "url": "" }, { "id": "000085427689", "database": "ZINC", "url": "" }, { "id": "C11378", "database": "COMPOUND", "url": "" }, { "id": "C00399", "database": "COMPOUND", "url": "" }, { "id": "46245", "database": "ChEBI", "url": "" }, { "id": "HMDB0001072", "database": "HMDB Metabolite", "url": "" }, { "id": "000085427689", "database": "ZINC", "url": "" }, { "id": "C11378", "database": "COMPOUND", "url": "" }, { "id": "C00399", "database": "COMPOUND", "url": "" }, { "id": "46245", "database": "ChEBI", "url": "" }, { "id": "HMDB0001072", "database": "HMDB Metabolite", "url": "" }, { "id": "000085427689", "database": "ZINC", "url": "" }, { "id": "C11378", "database": "COMPOUND", "url": "" }, { "id": "C00399", "database": "COMPOUND", "url": "" }, { "id": "46245", "database": "ChEBI", "url": "" }, { "id": "HMDB0001072", "database": "HMDB Metabolite", "url": "" }, { "id": "000085427689", "database": "ZINC", "url": "" }, { "id": "C11378", "database": "COMPOUND", "url": "" }, { "id": "C00399", "database": "COMPOUND", "url": "" }, { "id": "46245", "database": "ChEBI", "url": "" }, { "id": "HMDB0001072", "database": "HMDB Metabolite", "url": "" }, { "id": "000085427689", "database": "ZINC", "url": "" }, { "id": "C11378", "database": "COMPOUND", "url": "" }, { "id": "C00399", "database": "COMPOUND", "url": "" }, { "id": "46245", "database": "ChEBI", "url": "" }, { "id": "HMDB0001072", "database": "HMDB Metabolite", "url": "" }, { "id": "000085427689", "database": "ZINC", "url": "" }, { "id": "C11378", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-76633", "participant_name": "QH2 [mitochondrial inner membrane]", "crossref": [ { "id": "C00390", "database": "COMPOUND", "url": "" }, { "id": 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