{ "uniprot_canonical_ac": "P62250-1", "uniprot_ac": "P62250", "uniprot_id": "RS16_RAT", "mass": { "chemical_mass": 16445.0, "monoisotopic_mass": 16445.0 }, "refseq": { "ac": "XP_006228674", "name": "40S ribosomal protein S16 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_006228674" }, "gene_names": [ { "name": "Rps16", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/P62250", "id": "P62250" }, { "name": "Rps16", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001162617", "id": "NP_001162617" } ], "protein_names": [ { "name": "Small ribosomal subunit protein uS9", "resource": "UniProtKB", "type": "recommended", "url": "", "id": "P62250" }, { "name": "40S ribosomal protein S16 isoform X1", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_006228674", "id": "XP_006228674" }, { "name": "40S ribosomal protein S16", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001162617", "id": "NP_001162617" }, { "name": "40S ribosomal protein S16", "resource": "UniProtKB", "type": "synonym", "url": "", "id": "P62250" }, { "name": "small ribosomal subunit protein uS9", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001162617", "id": "NP_001162617" } ], "function": [ { "annotation": "Component of the small ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome.", "evidence": [ { "database": "UniProtKB", "id": "P62250", "url": "https://www.uniprot.org/uniprot/P62250#function" }, { "database": "UniProtKB", "id": "P62249", "url": "https://www.uniprot.org/uniprot/P62249#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P62250", "url": "https://www.uniprot.org/uniprot/P62250" } ], "common_name": "Rat" } ], "gene": [ { "name": "Rps16", "url": "https://www.uniprot.org/uniprot/P62250", "locus": { "chromosome": "1", "start_pos": 83646206, "end_pos": 83643130, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSRNOG00000019578", "url": "https://www.ensembl.org/id/ENSRNOG00000019578" } ] } } ], "crossref": [ { "id": "ENSRNOG00000019578", "url": "https://bgee.org/?page=gene&gene_id=ENSRNOG00000019578", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "140655", "url": "https://www.ncbi.nlm.nih.gov/gene/140655", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "P62250", "url": "https://www.ebi.ac.uk/intact/interactors/id:P62250*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR000754", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000754", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "rno:140655", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+rno:140655", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AMAHSKW", "url": "https://omabrowser.org/oma/group/AMAHSKW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "22228at2759", "url": "http://www.orthodb.org/?query=22228at2759", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21569", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21569", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21569:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21569:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21569:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21569:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00380", "url": "http://pfam.xfam.org/family/PF00380", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PR_P62250", "url": "http://purl.obolibrary.org/obo/PR_P62250", "database": "PRO", "categories": [ "Protein" ] }, { "id": "R-RNO-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-156827", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-1799339", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-6791226", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-72649", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72649", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72689", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-72695", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72695", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-72702", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72702", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72706", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-975956", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-RNO-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-975957", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "NP_001162617", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001162617", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "621031", "url": "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=621031", "database": "RGD", "categories": [ "Organism-specific" ] }, { "id": "A0A1W2Q631", "url": "https://www.uniprot.org/uniprot/A0A1W2Q631", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1W2Q631-1", "url": "https://www.uniprot.org/uniprot/A0A1W2Q631-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8L2QED1", "url": "https://www.uniprot.org/uniprot/A0A8L2QED1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8L2QED1-1", "url": "https://www.uniprot.org/uniprot/A0A8L2QED1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P62250", "url": "https://www.uniprot.org/uniprot/P62250", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P62250-1", "url": "https://www.uniprot.org/uniprot/P62250-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR", "length": 146, "header": "sp|P62250-1|RS16_RAT Isoform 1 of Small ribosomal subunit protein uS9 OS=Rattus norvegicus OX=10116 GN=Rps16 PE=1 SV=2 CANONICAL=P62250-1" }, "isoforms": [ { "isoform_ac": "A0A1W2Q631-1", "url": "", "sequence": { "sequence": "MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYGECEDLGVSVRQLLKQGWVFTKLFGHCVLQLSGSLSQKLWWLITKNMWMKPLRRRSKISSSSTIGPCL", "length": 150, "header": "tr|A0A1W2Q631-1|A0A1W2Q631_RAT Computationally mapped isoform of Ribosomal protein S16 OS=Rattus norvegicus OX=10116 GN=Rps16 PE=1 SV=1 CANONICAL=P62250-1" }, "locus": { "chromosome": "1", "start_pos": 83645670, "end_pos": 83643183, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000093558.2", "url": "https://www.ensembl.org/id/ENSRNOT00000093558.2" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000076119.1", "url": "https://www.ensembl.org/id/ENSRNOP00000076119.1" } ] } }, { "isoform_ac": "A0A8L2QED1-1", "url": "", "sequence": { "sequence": "GARVHTCSYAVQGSAAVRSSLRTQENSHSCGPLQTRKWAHQGEWTSPGDDRAAHAAVQGLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR", "length": 155, "header": "tr|A0A8L2QED1-1|RS16_RAT Computationally mapped isoform of Small ribosomal subunit protein uS9 OS=Rattus norvegicus OX=10116 GN=Rps16 PE=1 SV=1 CANONICAL=P62250-1" }, "locus": { "chromosome": "1", "start_pos": 83645747, "end_pos": 83643158, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSRNOT00000026576.8", "url": "https://www.ensembl.org/id/ENSRNOT00000026576.8" }, { "database": "Ensembl Peptide", "id": "ENSRNOP00000026576.6", "url": "https://www.ensembl.org/id/ENSRNOP00000026576.6" } ] } }, { "isoform_ac": "P62250-1", "url": "", "sequence": { "sequence": "MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR", "length": 146, "header": "sp|P62250-1|RS16_RAT Isoform 1 of Small ribosomal subunit protein uS9 OS=Rattus norvegicus OX=10116 GN=Rps16 PE=1 SV=2 CANONICAL=P62250-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [ { "start_pos": 3, "end_pos": 3, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P62250", "url": "https://www.uniprot.org/uniprot/P62250" } ], "site_lbl": "Ser3" } ], "glycation": [], "keywords": [], "publication": [ { "title": "The primary structure of rat ribosomal protein S16.", "journal": "FEBS Lett.", "date": "1990", "authors": "Olvera J., Chan Y.-L., Paz V., Wool I.G.", "evidence": [ { "database": "UniProtKB", "id": "P62250", "url": "https://www.uniprot.org/uniprot/P62250" } ], "reference": [ { "type": "PubMed", "id": "2332055", "url": "https://glygen.org/publication/PubMed/2332055" } ] } ], "pathway": [ { "id": "rno:140655", "name": "", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+rno:140655", "resource": "KEGG Pathway" }, { "id": "R-RNO-156827", "name": "L13a-mediated translational silencing of Ceruloplasmin expression", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-RNO-1799339", "name": "SRP-dependent cotranslational protein targeting to membrane", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-RNO-6791226", "name": "Major pathway of rRNA processing in the nucleolus and cytosol", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-RNO-72649", "name": "Translation initiation complex formation", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72649", "resource": "Reactome", "description": "Translation initiation complex formation" }, { "id": "R-RNO-72689", "name": "Formation of a pool of free 40S subunits", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-RNO-72695", "name": "Formation of the ternary complex, and subsequently, the 43S complex", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72695", "resource": "Reactome", "description": "Formation of the ternary complex, and subsequently, the 43S complex" }, { "id": "R-RNO-72702", "name": "Ribosomal scanning and start codon recognition", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72702", "resource": "Reactome", "description": "Ribosomal scanning and start codon recognition" }, { "id": "R-RNO-72706", "name": "GTP hydrolysis and joining of the 60S ribosomal subunit", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-RNO-975956", "name": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-RNO-975957", "name": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)", "url": "https://www.reactome.org/PathwayBrowser/#R-RNO-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" } ], "orthologs": [ { "uniprot_canonical_ac": "P14131-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "Rps16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR", "length": 146 }, "evidence": [ { "id": "45228925", "url": "http://www.informatics.jax.org/homology/45228925", "database": "MGI" } ], "common_name": "Mouse" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR", "length": 146 }, "evidence": [ { "id": "45228925", "url": "http://www.informatics.jax.org/homology/45228925", "database": "MGI" } ], "common_name": "Human" 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} ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }