{ "uniprot_canonical_ac": "P23642-1", "uniprot_ac": "P23642", "uniprot_id": "VAN1_YEAST", "mass": { "chemical_mass": 61092.0, "monoisotopic_mass": 61092.0 }, "refseq": { "ac": "NP_013592", "name": "Van1p", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_013592" }, "gene_names": [ { "name": "VAN1", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/P23642", "id": "P23642" }, { "name": "LDB13; VRG7; VRG8", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_013592", "id": "NP_013592" }, { "name": "VAN1", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_013592", "id": "NP_013592" }, { "name": "VRG7", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprot/P23642", "id": "P23642" }, { "name": "YM8339.04C", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprot/P23642", "id": "P23642" } ], "protein_names": [ { "name": "Mannan polymerase I complex VAN1 subunit", "resource": "UniProtKB", "type": "recommended", "url": "", "id": "P23642" }, { "name": "M-pol I subunit VAN1", "resource": "UniProtKB", "type": "synonym", "url": "", "id": "P23642" }, { "name": "Van1p", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_013592", "id": "NP_013592" }, { "name": "Vanadate resistance protein", "resource": "UniProtKB", "type": "synonym", "url": "", "id": "P23642" } ], "function": [ { "annotation": "Involved in regulation of the phosphorylation of a number of proteins, some of which appear to be important in cell growth control.", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642#function" } ] }, { "annotation": "The M-Pol I complex possesses alpha-1,6-mannosyltransferase activity and is probably involved in the elongation of the mannan backbone of N-linked glycans on cell wall and periplasmic proteins.", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [ { "start_pos": 361, "end_pos": 361, "sequence_org": "D", "sequence_mut": "A", "comment": "Reduced activity of the M-Pol I complex.", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" }, { "database": "PubMed", "id": "12235155", "url": "https://glygen.org/publication/PubMed/12235155" } ] } ], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "common_name": "Yeast" } ], "gene": [ { "name": "VAN1", "url": "https://www.uniprot.org/uniprot/P23642", "locus": { "chromosome": "XIII", "start_pos": 40187, "end_pos": 41794, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "YML115C", "url": "https://www.ensembl.org/id/YML115C" } ] } } ], "crossref": [ { "id": "GT62", "url": "http://www.cazy.org/GT62.html", "database": "CAZy", "categories": [ "Protein Classification" ] }, { "id": "854925", "url": "https://www.ncbi.nlm.nih.gov/gene/854925", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "P23642", "url": "https://www.ebi.ac.uk/intact/interactors/id:P23642*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "sce:YML115C", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+sce:YML115C", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AEYPTWR", "url": "https://omabrowser.org/oma/group/AEYPTWR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "2965755at2759", "url": "http://www.orthodb.org/?query=2965755at2759", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43083", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43083", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43083:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43083:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03452", "url": "http://pfam.xfam.org/family/PF03452", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PR_P23642", "url": "http://purl.obolibrary.org/obo/PR_P23642", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_013592", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_013592", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "S000004583", "url": "https://www.yeastgenome.org/locus/S000004583", "database": "SGD", "categories": [ "Organism-specific" ] }, { "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P23642-1", "url": "https://www.uniprot.org/uniprot/P23642-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGMFFNLRSNIKKKAMDNGLSLPISRNGSSNNIKDKRSEHNSNSLKGKYRYQPRSTPSKFQLTVSITSLIIIAVLSLYLFISFLSGMGIGVSTQNGRSLLGSSKSSENYKTIDLEDEEYYDYDFEDIDPEVISKFDDGVQHYLISQFGSEVLTPKDDEKYQRELNMLFDSTVEEYDLSNFEGAPNGLETRDHILLCIPLRNAADVLPLMFKHLMNLTYPHELIDLAFLVSDCSEGDTTLDALIAYSRHLQNGTLSQIFQEIDAVIDSQTKGTDKLYLKYMDEGYINRVHQAFSPPFHENYDKPFRSVQIFQKDFGQVIGQGFSDRHAVKVQGIRRKLMGRARNWLTANALKPYHSWVYWRDADVELCPGSVIQDLMSKNYDVIVPNVWRPLPTFLGTEQPYDLNSWMESQEALALAKTLDEDDVIVEGYAEYPTWRVHLAYIRDAEGDPNEAVDLDGVGGVSILAKAKIFRNGVQFPAFTFENHAETEAFGKMAKKMGYRVGGLPHYTIWHIYEPSDDDLKEIASREREKRRQSE", "length": 535, "header": "sp|P23642-1|VAN1_YEAST Isoform 1 of Mannan polymerase I complex VAN1 subunit OS=Saccharomyces cerevisiae S288C OX=559292 GN=VAN1 PE=1 SV=3 CANONICAL=P23642-1" }, "isoforms": [ { "isoform_ac": "P23642-1", "url": "", "sequence": { "sequence": "MGMFFNLRSNIKKKAMDNGLSLPISRNGSSNNIKDKRSEHNSNSLKGKYRYQPRSTPSKFQLTVSITSLIIIAVLSLYLFISFLSGMGIGVSTQNGRSLLGSSKSSENYKTIDLEDEEYYDYDFEDIDPEVISKFDDGVQHYLISQFGSEVLTPKDDEKYQRELNMLFDSTVEEYDLSNFEGAPNGLETRDHILLCIPLRNAADVLPLMFKHLMNLTYPHELIDLAFLVSDCSEGDTTLDALIAYSRHLQNGTLSQIFQEIDAVIDSQTKGTDKLYLKYMDEGYINRVHQAFSPPFHENYDKPFRSVQIFQKDFGQVIGQGFSDRHAVKVQGIRRKLMGRARNWLTANALKPYHSWVYWRDADVELCPGSVIQDLMSKNYDVIVPNVWRPLPTFLGTEQPYDLNSWMESQEALALAKTLDEDDVIVEGYAEYPTWRVHLAYIRDAEGDPNEAVDLDGVGGVSILAKAKIFRNGVQFPAFTFENHAETEAFGKMAKKMGYRVGGLPHYTIWHIYEPSDDDLKEIASREREKRRQSE", "length": 535, "header": "sp|P23642-1|VAN1_YEAST Isoform 1 of Mannan polymerase I complex VAN1 subunit OS=Saccharomyces cerevisiae S288C OX=559292 GN=VAN1 PE=1 SV=3 CANONICAL=P23642-1" }, "locus": { "chromosome": "XIII", "start_pos": 41794, "end_pos": 40190, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "YML115C_mRNA", "url": "https://www.ensembl.org/id/YML115C_mRNA" }, { "database": "Ensembl Peptide", "id": "YML115C", "url": "https://www.ensembl.org/id/YML115C" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "site_category": "predicted", "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "start_pos": 215, "start_aa": "Asn", "end_pos": 215, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn215", "evidence": [ { "id": "P23642", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprot/P23642#ptm_processing" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "site_category": "predicted", "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "start_pos": 251, "start_aa": "Asn", "end_pos": 251, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn251", "evidence": [ { "id": "P23642", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprot/P23642#ptm_processing" } ] } ], "phosphorylation": [ { "start_pos": 25, "end_pos": 25, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" }, { "database": "PubMed", "id": "18407956", "url": "https://glygen.org/publication/PubMed/18407956" }, { "database": "PubMed", "id": "19779198", "url": "https://glygen.org/publication/PubMed/19779198" }, { "database": "iPTMnet", "id": "P23642", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23642" }, { "database": "PubMed", "id": "19795423", "url": "https://glygen.org/publication/PubMed/19795423" }, { "database": "PubMed", "id": "19823750", "url": "https://glygen.org/publication/PubMed/19823750" }, { "database": "SGD", "id": "P23642", "url": "https://www.yeastgenome.org/locus/P23642" }, { "database": "PubMed", "id": "23749301", "url": "https://glygen.org/publication/PubMed/23749301" } ], "site_lbl": "Ser25" }, { "start_pos": 29, "end_pos": 29, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P23642", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23642" }, { "database": "PubMed", "id": "19795423", "url": "https://glygen.org/publication/PubMed/19795423" }, { "database": "PubMed", "id": "19823750", "url": "https://glygen.org/publication/PubMed/19823750" }, { "database": "SGD", "id": "P23642", "url": "https://www.yeastgenome.org/locus/P23642" }, { "database": "PubMed", "id": "23749301", "url": "https://glygen.org/publication/PubMed/23749301" } ], "site_lbl": "Ser29" } ], "glycation": [], "keywords": [ "enzyme", "glycosyltransferase-activity", "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Active recycling of yeast Golgi mannosyltransferase complexes through the endoplasmic reticulum.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2000", "authors": "Schekman R., Spang A., Yates J., Carmack E., Todorow Z.", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "reference": [ { "type": "PubMed", "id": "11095735", "url": "https://glygen.org/publication/PubMed/11095735" } ] }, { "title": "The components of the Saccharomyces cerevisiae mannosyltransferase complex M-Pol I have distinct functions in mannan synthesis.", "journal": "J. Biol. Chem.", "date": "2002", "authors": "Stolz Jurgen, Munro Sean", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "reference": [ { "type": "PubMed", "id": "12235155", "url": "https://glygen.org/publication/PubMed/12235155" } ] }, { "title": "Global analysis of protein expression in yeast.", "journal": "Nature", "date": "2003", "authors": "Dephoure N., Weissman J.S., Howson R.W., Huh W.-K., O'Shea E.K., Belle A., Bower K., Ghaemmaghami S.", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "reference": [ { "type": "PubMed", "id": "14562106", "url": "https://glygen.org/publication/PubMed/14562106" } ] }, { "title": "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2008-07", "authors": "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" }, { "database": "iPTMnet", "id": "P23642", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23642" } ], "reference": [ { "type": "PubMed", "id": "18407956", "url": "https://glygen.org/publication/PubMed/18407956" } ] }, { "title": "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "journal": "Science (New York, N.Y.)", "date": "2009-09-25", "authors": "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" }, { "database": "iPTMnet", "id": "P23642", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23642" } ], "reference": [ { "type": "PubMed", "id": "19779198", "url": "https://glygen.org/publication/PubMed/19779198" } ] }, { "title": "High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast.", "journal": "Proteomics", "date": "2009-10", "authors": "Gnad Florian, de Godoy Lyris M F, Cox J\u00fcrgen, Neuhauser Nadin, Ren Shubin, Olsen Jesper V, Mann Matthias", "evidence": [ { "database": "iPTMnet", "id": "P23642", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23642" } ], "reference": [ { "type": "PubMed", "id": "19795423", "url": "https://glygen.org/publication/PubMed/19795423" } ] }, { "title": "Global analysis of the yeast osmotic stress response by quantitative proteomics.", "journal": "Molecular bioSystems", "date": "2009-11", "authors": "Soufi Boumediene, Kelstrup Christian D, Stoehr Gabriele, Fr\u00f6hlich Florian, Walther Tobias C, Olsen Jesper V", "evidence": [ { "database": "iPTMnet", "id": "P23642", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23642" } ], "reference": [ { "type": "PubMed", "id": "19823750", "url": "https://glygen.org/publication/PubMed/19823750" } ] }, { "title": "Vanadate-resistant mutants of Saccharomyces cerevisiae show alterations in protein phosphorylation and growth control.", "journal": "Mol. Cell. Biol.", "date": "1990", "authors": "Neff N., Kanik-Ennulat C.", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "reference": [ { "type": "PubMed", "id": "2137555", "url": "https://glygen.org/publication/PubMed/2137555" } ] }, { "title": "Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.", "journal": "Nature methods", "date": "2013-07", "authors": "Swaney Danielle L, Beltrao Pedro, Starita Lea, Guo Ailan, Rush John, Fields Stanley, Krogan Nevan J, Vill\u00e9n Judit", "evidence": [ { "database": "iPTMnet", "id": "P23642", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23642" } ], "reference": [ { "type": "PubMed", "id": "23749301", "url": "https://glygen.org/publication/PubMed/23749301" } ] }, { "title": "The reference genome sequence of Saccharomyces cerevisiae: Then and now.", "journal": "G3 (Bethesda)", "date": "2014", "authors": "Engel Stacia R, Dietrich Fred S, Fisk Dianna G, Binkley Gail, Balakrishnan Rama, Costanzo Maria C, Dwight Selina S, Hitz Benjamin C, Karra Kalpana, Nash Robert S, Weng Shuai, Wong Edith D, Lloyd Paul, Skrzypek Marek S, Miyasato Stuart R, Simison Matt, Cherry J Michael", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "reference": [ { "type": "PubMed", "id": "24374639", "url": "https://glygen.org/publication/PubMed/24374639" } ] }, { "title": "The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII.", "journal": "Nature", "date": "1997", "authors": "Connor R., Gentles S., Pearson D., Bowman S., Hunt S., Barrell B.G., Skelton J., Brown D., Rice P., Odell C., Whitehead S., Badcock K., Chillingworth T., Churcher C.M., Dedman K., Devlin K., Hamlin N., Jagels K., Lye G., Moule S., Rajandream M.A., Walsh S.V.", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "reference": [ { "type": "PubMed", "id": "9169872", "url": "https://glygen.org/publication/PubMed/9169872" } ] }, { "title": "Multi-protein complexes in the cis Golgi of Saccharomyces cerevisiae with alpha-1,6-mannosyltransferase activity.", "journal": "EMBO J.", "date": "1998", "authors": "Jungmann J, Munro S", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "reference": [ { "type": "PubMed", "id": "9430634", "url": "https://glygen.org/publication/PubMed/9430634" } ] }, { "title": "Novel membrane protein complexes for protein glycosylation in the yeast Golgi apparatus.", "journal": "Biochem. Biophys. Res. Commun.", "date": "1997", "authors": "Hashimoto H., Yoda K.", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "reference": [ { "type": "PubMed", "id": "9434768", "url": "https://glygen.org/publication/PubMed/9434768" } ] } ], "pathway": [ { "id": "sce:YML115C", "name": "", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+sce:YML115C", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell wall mannoprotein biosynthetic process", "id": "GO:0000032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000032", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "pmid": "" }, { "name": "protein N-linked glycosylation", "id": "GO:0006487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006487", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "pmid": "" }, { "name": "mannosylation", "id": "GO:0097502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097502", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "pmid": "" }, { "name": "sporulation resulting in formation of a cellular spore", "id": "GO:0030435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030435", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "pmid": "" }, { "name": "mannan polymerase complex", "id": "GO:0000136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000136", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "alpha-1,6-mannosyltransferase activity", "id": "GO:0000009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000009", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [ { "annotation": "Glycosylated.", "evidence": [ { "database": "UniProtKB", "id": "P23642", "url": "https://www.uniprot.org/uniprot/P23642" }, { "database": "PubMed", "id": "9430634", "url": "https://glygen.org/publication/PubMed/9430634" } ] } ], "interactions": [], 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"title", "journal", "date", "authors" ] } ] }