{ "uniprot_canonical_ac": "P00931-1", "uniprot_ac": "P00931", "uniprot_id": "TRP_YEAST", "mass": { "chemical_mass": 76626.0, "monoisotopic_mass": 76626.0 }, "refseq": { "ac": "NP_011489", "name": "tryptophan synthase TRP5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_011489" }, "gene_names": [ { "name": "TRP5", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/P00931", "id": "P00931" }, { "name": "TRP5", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_011489", "id": "NP_011489" } ], "protein_names": [ { "name": "Tryptophan synthase", "resource": "UniProtKB", "type": "recommended", "url": "", "id": "P00931" }, { "name": "4.2.1.20", "resource": "UniProtKB", "type": "synonym", "url": "", "id": "P00931" }, { "name": "tryptophan synthase TRP5", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_011489", "id": "NP_011489" } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "common_name": "Yeast" } ], "gene": [ { "name": "TRP5", "url": "https://www.uniprot.org/uniprot/P00931", "locus": {} } ], "crossref": [ { "id": "cd04724", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04724", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06446", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06446", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "852858", "url": "https://www.ncbi.nlm.nih.gov/gene/852858", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "P00931", "url": "https://www.ebi.ac.uk/intact/interactors/id:P00931*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006654", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006654", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013785", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013785", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018204", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018204", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023026", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023026", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "sce:YGL026C", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+sce:YGL026C", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "P00931", "url": "https://oglcnac.org/atlas/detail/P00931", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P00931", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P00931", "database": "O-GlcNAc Database", "categories": [ "Glycoproteomics" ] }, { "id": "VDTARHS", "url": "https://omabrowser.org/oma/group/VDTARHS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "9569at2759", "url": "http://www.orthodb.org/?query=9569at2759", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48077", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48077", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48077:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48077:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00290", "url": "http://pfam.xfam.org/family/PF00290", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF00291", "url": "http://pfam.xfam.org/family/PF00291", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PR_P00931", "url": "http://purl.obolibrary.org/obo/PR_P00931", "database": "PRO", "categories": [ "Protein" ] }, { "id": "NP_011489", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_011489", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "S000002994", "url": "https://www.yeastgenome.org/locus/S000002994", "database": "SGD", "categories": [ "Organism-specific" ] }, { "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P00931-1", "url": "https://www.uniprot.org/uniprot/P00931-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEQLRQTFANAKKENRNALVTFMTAGYPTVKDTVPILKGFQDGGVDIIELGMPFSDPIADGPTIQLSNTVALQNGVTLPQTLEMVSQARNEGVTVPIILMGYYNPILNYGEERFIQDAAKAGANGFIIVDLPPEEALKVRNYINDNGLSLIPLVAPSTTDERLELLSHIADSFVYVVSRMGTTGVQSSVASDLDELISRVRKYTKDTPLAVGFGVSTREHFQSVGSVADGVVIGSKIVTLCGDAPEGKRYDVAKEYVQGILNGAKHKVLSKDEFFAFQKESLKSANVKKEILDEFDENHKHPIRFGDFGGQYVPEALHACLRELEKGFDEAVADPTFWEDFKSLYSYIGRPSSLHKAERLTEHCQGAQIWLKREDLNHTGSHKINNALAQVLLAKRLGKKNVIAETGAGQHGVATATACAKFGLTCTVFMGAEDVRRQALNVFRMRILGAKVIAVTNGTKTLRDATSEAFRFWVTNLKTTYYVVGSAIGPHPYPTLVRTFQSVIGKETKEQFAAMNNGKLPDAVVACVGGGSNSTGMFSPFEHDTSVKLLGVEAGGDGVDTKFHSATLTAGRPGVFHGVKTYVLQDSDGQVHDTHSVSAGLDYPGVGPELAYWKSTGRAQFIAATDAQALLGFKLLSQLEGIIPALESSHAVYGACELAKTMKPDQHLVINISGRGDKDVQSVAEVLPKLGPKIGWDLRFEEDPSA", "length": 707, "header": "sp|P00931-1|TRP_YEAST Isoform 1 of Tryptophan synthase OS=Saccharomyces cerevisiae S288C OX=559292 GN=TRP5 PE=1 SV=1 CANONICAL=P00931-1" }, "isoforms": [ { "isoform_ac": "P00931-1", "url": "", "sequence": { "sequence": "MSEQLRQTFANAKKENRNALVTFMTAGYPTVKDTVPILKGFQDGGVDIIELGMPFSDPIADGPTIQLSNTVALQNGVTLPQTLEMVSQARNEGVTVPIILMGYYNPILNYGEERFIQDAAKAGANGFIIVDLPPEEALKVRNYINDNGLSLIPLVAPSTTDERLELLSHIADSFVYVVSRMGTTGVQSSVASDLDELISRVRKYTKDTPLAVGFGVSTREHFQSVGSVADGVVIGSKIVTLCGDAPEGKRYDVAKEYVQGILNGAKHKVLSKDEFFAFQKESLKSANVKKEILDEFDENHKHPIRFGDFGGQYVPEALHACLRELEKGFDEAVADPTFWEDFKSLYSYIGRPSSLHKAERLTEHCQGAQIWLKREDLNHTGSHKINNALAQVLLAKRLGKKNVIAETGAGQHGVATATACAKFGLTCTVFMGAEDVRRQALNVFRMRILGAKVIAVTNGTKTLRDATSEAFRFWVTNLKTTYYVVGSAIGPHPYPTLVRTFQSVIGKETKEQFAAMNNGKLPDAVVACVGGGSNSTGMFSPFEHDTSVKLLGVEAGGDGVDTKFHSATLTAGRPGVFHGVKTYVLQDSDGQVHDTHSVSAGLDYPGVGPELAYWKSTGRAQFIAATDAQALLGFKLLSQLEGIIPALESSHAVYGACELAKTMKPDQHLVINISGRGDKDVQSVAEVLPKLGPKIGWDLRFEEDPSA", "length": 707, "header": "sp|P00931-1|TRP_YEAST Isoform 1 of Tryptophan synthase OS=Saccharomyces cerevisiae S288C OX=559292 GN=TRP5 PE=1 SV=1 CANONICAL=P00931-1" }, "locus": { "chromosome": "VII", "start_pos": 448535, "end_pos": 446415, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "YGL026C_mRNA", "url": "https://www.ensembl.org/id/YGL026C_mRNA" }, { "database": "Ensembl Peptide", "id": "YGL026C", "url": "https://www.ensembl.org/id/YGL026C" } ] } } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "site_category": "reported_with_glycan", "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "start_pos": 240, "start_aa": "Thr", "end_pos": 240, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr240", "evidence": [ { "id": "P00931", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P00931" }, { "id": "33229814", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33229814" } ] }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "site_category": "reported_with_glycan", "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "evidence": [ { "id": "P00931", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P00931" }, { "id": "33229814", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33229814" } ] } ], "phosphorylation": [ { "start_pos": 540, "end_pos": 540, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" }, { "database": "PubMed", "id": "18407956", "url": "https://glygen.org/publication/PubMed/18407956" }, { "database": "iPTMnet", "id": "P00931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P00931" }, { "database": "SGD", "id": "P00931", "url": "https://www.yeastgenome.org/locus/P00931" } ], "site_lbl": "Ser540" }, { "start_pos": 683, "end_pos": 683, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" }, { "database": "PubMed", "id": "18407956", "url": "https://glygen.org/publication/PubMed/18407956" }, { "database": "iPTMnet", "id": "P00931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P00931" }, { "database": "PubMed", "id": "17563356", "url": "https://glygen.org/publication/PubMed/17563356" }, { "database": "SGD", "id": "P00931", "url": "https://www.yeastgenome.org/locus/P00931" }, { "database": "PubMed", "id": "23749301", "url": "https://glygen.org/publication/PubMed/23749301" } ], "site_lbl": "Ser683" } ], "glycation": [], "keywords": [ "enzyme", "glycoprotein", "glycoprotein_reported_with_glycan" ], "publication": [ { "title": "Global analysis of protein expression in yeast.", "journal": "Nature", "date": "2003", "authors": "Dephoure N., Weissman J.S., Howson R.W., Huh W.-K., O'Shea E.K., Belle A., Bower K., Ghaemmaghami S.", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "reference": [ { "type": "PubMed", "id": "14562106", "url": "https://glygen.org/publication/PubMed/14562106" } ] }, { "title": "Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007-06-19", "authors": "Smolka Marcus B, Albuquerque Claudio P, Chen Sheng-hong, Zhou Huilin", "evidence": [ { "database": "iPTMnet", "id": "P00931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P00931" } ], "reference": [ { "type": "PubMed", "id": "17563356", "url": "https://glygen.org/publication/PubMed/17563356" } ] }, { "title": "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2008-07", "authors": "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" }, { "database": "iPTMnet", "id": "P00931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P00931" } ], "reference": [ { "type": "PubMed", "id": "18407956", "url": "https://glygen.org/publication/PubMed/18407956" } ] }, { "title": "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "journal": "Science", "date": "2009", "authors": "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "reference": [ { "type": "PubMed", "id": "19779198", "url": "https://glygen.org/publication/PubMed/19779198" } ] }, { "title": "Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.", "journal": "Nature methods", "date": "2013-07", "authors": "Swaney Danielle L, Beltrao Pedro, Starita Lea, Guo Ailan, Rush John, Fields Stanley, Krogan Nevan J, Vill\u00e9n Judit", "evidence": [ { "database": "iPTMnet", "id": "P00931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P00931" } ], "reference": [ { "type": "PubMed", "id": "23749301", "url": "https://glygen.org/publication/PubMed/23749301" } ] }, { "title": "The reference genome sequence of Saccharomyces cerevisiae: Then and now.", "journal": "G3 (Bethesda)", "date": "2014", "authors": "Engel Stacia R, Dietrich Fred S, Fisk Dianna G, Binkley Gail, Balakrishnan Rama, Costanzo Maria C, Dwight Selina S, Hitz Benjamin C, Karra Kalpana, Nash Robert S, Weng Shuai, Wong Edith D, Lloyd Paul, Skrzypek Marek S, Miyasato Stuart R, Simison Matt, Cherry J Michael", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "reference": [ { "type": "PubMed", "id": "24374639", "url": "https://glygen.org/publication/PubMed/24374639" } ] }, { "title": "Identification of novel O-GlcNAc transferase substrates using yeast cells expressing OGT.", "journal": "The Journal of general and applied microbiology", "date": "2021-04-16", "authors": "Li Feng, Yang Ganglong, Tachikawa Hiroyuki, Shao Kankai, Yang Yan, Gao Xiao-Dong, Nakanishi Hideki", "evidence": [ { "database": "O-GlcNAc Database", "id": "P00931", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P00931" }, { "database": "O-GlcNAc Atlas", "id": "P00931", "url": "https://oglcnac.org/atlas/detail/P00931" } ], "reference": [ { "type": "PubMed", "id": "33229814", "url": "https://glygen.org/publication/PubMed/33229814" } ] }, { "title": "Yeast gene TRP5: structure, function, regulation.", "journal": "J. Biol. Chem.", "date": "1982", "authors": "Zalkin H., Yanofsky C.", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "reference": [ { "type": "PubMed", "id": "6276387", "url": "https://glygen.org/publication/PubMed/6276387" } ] }, { "title": "DNA sequences flanking an E. coli insertion element IS2 in a cloned yeast TRP5 gene.", "journal": "Gene", "date": "1982", "authors": "Walz A., Brosius J.", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "reference": [ { "type": "PubMed", "id": "6282714", "url": "https://glygen.org/publication/PubMed/6282714" } ] }, { "title": "The nucleotide sequence of Saccharomyces cerevisiae chromosome VII.", "journal": "Nature", "date": "1997", "authors": "Mewes H.-W., Minenkova O., Schaefer M., Scharfe M., Wambutt R., Wedler H., Verhasselt P., Hansen M., Rose M., Durand P., Brueckner M., Plevani P., Netter P., Rieger M., Zimmermann M., Portetelle D., Wolf K., Bertani I., Delius H., Kleine K., Portillo F., Hofmann B., Albers M., Schaefer B., Kramer W., Castagnoli L., Volckaert G., Koetter P., Entian K.-D., Kramer B., Rinaldi T., Thierry A., Louis E.J., Vandenbol M., Martegani E., Robben J., Nombela C., Vanoni M., Arroyo J., Eraso P., Mazon M.J., James C.M., Carignani G., Dujon B., Feuermann M., Goffeau A., Hani J., Hilger F., Klima R., Mueller-Auer S., Oliver S.G., Potier S., Rodrigues-Pousada C., Schmidheini T., Souciet J.-L., Steensma H.Y., Zollner A., Bruschi C.V., Escribano V., Frontali L., Guerreiro P., Mazzoni C., Purnelle B., Rodriguez-Torres A.M., Skala J., Talla E., Voet M., de Wergifosse P., Agostoni-Carbone M.L., Albermann K., Backes U., Barreiros T., Bjourson A.J., Cerdan E., Clemente M.L., Coblenz A., Coglievina M., Coissac E., Defoor E., Del Bino S., Delneri D., Fabiani L., Fartmann B., Feroli F., Garcia-Gonzalez M., Garcia-Saez M.I., Hebling U., Hernandez K., Heumann K., Indge K.J., Lauquin G., Leuther H., Maillier E., Marconi A., McReynolds A.D.K., Melchioretto P., Nawrocki A., Neu R., Panzeri L., Paoluzi S., Riles L., Rodriguez-Belmonte E., Ruzzi M., Saliola M., Sanchez-Perez M., Schreer A., Tettelin H., Van Dyck L., Watson M.D., Weber N., Wedler E., Wipfli P., Wright L.F., Zaccaria P., van der Aart Q.J.M.", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "reference": [ { "type": "PubMed", "id": "9169869", "url": "https://glygen.org/publication/PubMed/9169869" } ] } ], "pathway": [ { "id": "sce:YGL026C", "name": "", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+sce:YGL026C", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "tryptophan biosynthetic process", "id": "GO:0000162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000162", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "tryptophan synthase activity", "id": "GO:0004834", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004834", "evidence": [ { "database": "UniProtKB", "id": "P00931", "url": "https://www.uniprot.org/uniprot/P00931" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 672, "end_pos": 674, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10532", "name": "", "equation": "(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "P00931-1" ], "evidence": [ { "id": "10532", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10532" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "P00931", "gene_name": "TRP5", "activity": [ { "ec_number": "4.2.1.20", "activity": "(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan.", "evidence": [ { "id": 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