{ "uniprot_canonical_ac": "A0A286ZZD3-1", "uniprot_ac": "A0A286ZZD3", "uniprot_id": "A0A286ZZD3_PIG", "mass": { "chemical_mass": 123691.0, "monoisotopic_mass": 123691.0 }, "refseq": { "ac": "NP_001231518", "name": "phospholipase D1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518" }, "gene_names": [ { "name": "PLD1", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3", "id": "A0A286ZZD3" }, { "name": "PLD1", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518", "id": "NP_001231518" } ], "protein_names": [ { "name": "Phospholipase", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZD3/entry#names_and_taxonomy", "id": "A0A286ZZD3" }, { "name": "3.1.4.4", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZD3/entry#names_and_taxonomy", "id": "A0A286ZZD3" }, { "name": "phospholipase D1, phosphatidylcholine-specific", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518", "id": "NP_001231518" }, { "name": "phospholipase D1", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518", "id": "NP_001231518" } ], "function": [ { "annotation": "Acetylcholine induces phosphorylation of PLD1 in porcine tracheal smooth muscle.", "evidence": [ { "database": "RefSeq", "id": "NP_001231518", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518" }, { "database": "PubMed", "id": "15591778", "url": "https://glygen.org/publication/PubMed/15591778" } ] }, { "annotation": "PI3K may have a role in nuclear PLD1 regulation; pertussis toxin induced a decrease of LPA-stimulated nuclear PLD1 activity, suggesting that heterotrimeric G(i)/G(0) protein involvement in intranuclear PLD1 regulation(phospholipase D-1)", "evidence": [ { "database": "RefSeq", "id": "NP_001231518", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518" }, { "database": "PubMed", "id": "16778131", "url": "https://glygen.org/publication/PubMed/16778131" } ] }, { "annotation": "The results indicate that PKC could be the final target and an integrator molecule of different signaling pathways triggered by angiotensin II (Ang II), which could explain the sustained activation of Na(+)-ATPase by Ang II.", "evidence": [ { "database": "RefSeq", "id": "NP_001231518", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518" }, { "database": "PubMed", "id": "19958748", "url": "https://glygen.org/publication/PubMed/19958748" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLD1", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3", "locus": { "chromosome": "13", "start_pos": 110154874, "end_pos": 110376294, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011750", "url": "https://www.ensembl.org/id/ENSSSCG00000011750" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011750", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011750", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01254", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01254", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07296", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07296", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09842", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09842", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09844", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09844", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519446", "url": "https://www.ncbi.nlm.nih.gov/gene/100519446", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015679", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015679", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016555", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016555", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519446", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+ssc:100519446", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EWRLDQI", "url": "https://omabrowser.org/oma/group/EWRLDQI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "335467at2759", "url": "http://www.orthodb.org/?query=335467at2759", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18896", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18896", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18896:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18896:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "http://pfam.xfam.org/family/PF00169", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF00614", "url": "http://pfam.xfam.org/family/PF00614", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF00787", "url": "http://pfam.xfam.org/family/PF00787", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF13091", "url": "http://pfam.xfam.org/family/PF13091", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-1483166", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483166", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-2029485", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-9013408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "database": "Reactome", "categories": [ "Protein Classification" ] }, { "id": "NP_001231518", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "14445", "url": "https://www.rhea-db.org/rhea/14445", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZD3-1", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VBT2", "url": "https://www.uniprot.org/uniprot/A0A4X1VBT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VBT2-1", "url": "https://www.uniprot.org/uniprot/A0A4X1VBT2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH14", "url": "https://www.uniprot.org/uniprot/F1SH14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH14-1", "url": "https://www.uniprot.org/uniprot/F1SH14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLKNEPRVNTSALRKIAADMSNLIENLDTRELHFEGEEVEYDVSPSDPKTQEVYIPFSAIYKTQGFKEPSIQTYLSGCPVKVQVLEVERFTSTTRVPSINLYTIELTHGEFKWQVKRKFKHFQEFHRELLKYKAFIRIPIPTRRHTFRRQNVKEEPREMPSLPRSSENMIREEQFFGRRKQLEDYLTKLLKMPMYRNYHATTEFLDISQLSFIHDLGPKGIEGMIMKRSGGHRIPGLNCCGQGRACYRWSKRWLIVKDSFLLYMKPDSGAIAFVLLVDKEFKIKVGKKETETKYGLRIDNLSRTLILKCNSYRHARWWGGAIEEFIQKYGPNFLKDHRFGSYAAIQENTLTKWYVNAKGYFEDVANAMEEAKEEIFITDWWLSPEIFLKRPVVEGNRWRLDCILKRKAQQGVRIFVMLYKEVELALGINSEYSKRTLMRLHPNIKVMRHPDHVSSSVYLWAHHEKLVIIDQSVAFVGGIDLAYGRWDDNEHRLTDVGSVKRVIGGPSPSSATAETTESMESLSLKDRSESNKDLSILKNVDDADSKLKGIGKPRKFSKFSLYRQLHRHHLHNADSISSIDSASSYGNHCRSRQNLIHGLKPHLKLFHSSSESEQGLTRPNSATGSIRSLQTGVGELHGETRFWHGKDYCNFVFKDWVQLDKPFADFIDRYSTPRMPWHDIASAVHGKAARDVARHFIQRWNFTKIMKPKYRSLSYPFLLPKSQTTAHELKYQVPGSVHANVQLLRSAADWSAGIKYHEESIHAAYVHVIENSQHYIYIENQFLISCADDKVVFNKIGDAIAQRILKAHRESQRYRVYVVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGENSIIGQLKAELGNQWINYISFCGLRTHAELEGNLVTELIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAVIVQDTETVPSVMDGKQYQAGQFAQGLRLKCFRVVLGYLSGPSEDLQDPVSDKFFKEVWVSTAARNATIYDKVFRCLPNDEVHNLIQLRDFISKPILAKEDPIRAEEELKKIRGFLVQFPFYFLSEENLLPSVGSKEAMVPTEVWT", "length": 1074, "header": "tr|A0A286ZZD3-1|A0A286ZZD3_PIG Isoform 1 of Phospholipase OS=Sus scrofa OX=9823 GN=PLD1 PE=3 SV=1 CANONICAL=A0A286ZZD3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZD3/entry#A0A286ZZD3-1", "sequence": { "sequence": "MSLKNEPRVNTSALRKIAADMSNLIENLDTRELHFEGEEVEYDVSPSDPKTQEVYIPFSAIYKTQGFKEPSIQTYLSGCPVKVQVLEVERFTSTTRVPSINLYTIELTHGEFKWQVKRKFKHFQEFHRELLKYKAFIRIPIPTRRHTFRRQNVKEEPREMPSLPRSSENMIREEQFFGRRKQLEDYLTKLLKMPMYRNYHATTEFLDISQLSFIHDLGPKGIEGMIMKRSGGHRIPGLNCCGQGRACYRWSKRWLIVKDSFLLYMKPDSGAIAFVLLVDKEFKIKVGKKETETKYGLRIDNLSRTLILKCNSYRHARWWGGAIEEFIQKYGPNFLKDHRFGSYAAIQENTLTKWYVNAKGYFEDVANAMEEAKEEIFITDWWLSPEIFLKRPVVEGNRWRLDCILKRKAQQGVRIFVMLYKEVELALGINSEYSKRTLMRLHPNIKVMRHPDHVSSSVYLWAHHEKLVIIDQSVAFVGGIDLAYGRWDDNEHRLTDVGSVKRVIGGPSPSSATAETTESMESLSLKDRSESNKDLSILKNVDDADSKLKGIGKPRKFSKFSLYRQLHRHHLHNADSISSIDSASSYGNHCRSRQNLIHGLKPHLKLFHSSSESEQGLTRPNSATGSIRSLQTGVGELHGETRFWHGKDYCNFVFKDWVQLDKPFADFIDRYSTPRMPWHDIASAVHGKAARDVARHFIQRWNFTKIMKPKYRSLSYPFLLPKSQTTAHELKYQVPGSVHANVQLLRSAADWSAGIKYHEESIHAAYVHVIENSQHYIYIENQFLISCADDKVVFNKIGDAIAQRILKAHRESQRYRVYVVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGENSIIGQLKAELGNQWINYISFCGLRTHAELEGNLVTELIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAVIVQDTETVPSVMDGKQYQAGQFAQGLRLKCFRVVLGYLSGPSEDLQDPVSDKFFKEVWVSTAARNATIYDKVFRCLPNDEVHNLIQLRDFISKPILAKEDPIRAEEELKKIRGFLVQFPFYFLSEENLLPSVGSKEAMVPTEVWT", "length": 1074, "header": "tr|A0A286ZZD3-1|A0A286ZZD3_PIG Isoform 1 of Phospholipase OS=Sus scrofa OX=9823 GN=PLD1 PE=3 SV=1 CANONICAL=A0A286ZZD3-1" }, "locus": {} }, { "isoform_ac": "A0A4X1VBT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZD3/entry#A0A4X1VBT2-1", "sequence": { "sequence": "MSLKNEPRVNTSALRKIAADMSNLIENLDTRELHFEGEEVEYDVSPSDPKTQEVYIPFSAIYKTQGFKEPSIQTYLSGCPVKVQVLEVERFTSTTRVPSINLYTIELTHGEFKWQVKRKFKHFQEFHRELLKYKAFIRIPIPTRRHTFRRQNVKEEPREMPSLPRSSENMIREEQFFGRRKQLEDYLTKLLKMPMYRNYHATTEFLDISQLSFIHDLGPKGIEGMIMKRSGGHRIPGLNCCGQGRACYRWSKRWLIVKDSFLLYMKPDSGAIAFVLLVDKEFKIKVGKKETETKYGLRIDNLSRTLILKCNSYRHARWWGGAIEEFIQKYGPNFLKDHRFGSYAAIQENTLTKWYVNAKGYFEDVANAMEEAKEEIFITDWWLSPEIFLKRPVVEGNRWRLDCILKRKAQQGVRIFVMLYKEVELALGINSEYSKRTLMRLHPNIKVMRHPDHVSSSVYLWAHHEKLVIIDQSVAFVGGIDLAYGRWDDNEHRLTDVGSVKRVIGGPSPSSATAETTESMESLSLKDRSESNKDLSILKNVDDADSKLKGIGKPRKFSKFSLYRQLHRHHLHNADSISSIDSASTTGSIRSLQTGVGELHGETRFWHGKDYCNFVFKDWVQLDKPFADFIDRYSTPRMPWHDIASAVHGKAARDVARHFIQRWNFTKIMKPKYRSLSYPFLLPKSQTTAHELKYQVPGSVHANVQLLRSAADWSAGIKYHEESIHAAYVHVIENSQHYIYIENQFLISCADDKVVFNKIGDAIAQRILKAHRESQRYRVYVVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGENSIIGQLKAELGNQWINYISFCGLRTHAELEGNLVTELIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAVIVQDTETVPSVMDGKQYQAGQFAQGLRLKCFRVVLGYLSGPSEDLQDPVSDKFFKEVWVSTAARNATIYDKVFRCLPNDEVHNLIQLRDFISKPILAKEDPIRAEEELKKIRGFLVQFPFYFLSEENLLPSVGSKEAMVPTEVWT", "length": 1036, "header": "tr|A0A4X1VBT2-1|A0A286ZZD3_PIG Computationally mapped isoform of Phospholipase OS=Sus scrofa OX=9823 GN=PLD1 PE=3 SV=1 CANONICAL=A0A286ZZD3-1" }, "locus": {} }, { "isoform_ac": "F1SH14-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZD3/entry#F1SH14-1", "sequence": { "sequence": "MSLKNEPRVNTSALRKIAADMSNLIENLDTRELHFEGEEVEYDVSPSDPKTQEGTKHQSLHH", "length": 62, "header": "tr|F1SH14-1|A0A286ZZD3_PIG Computationally mapped isoform of Phospholipase OS=Sus scrofa OX=9823 GN=PLD1 PE=3 SV=4 CANONICAL=A0A286ZZD3-1" }, "locus": { "chromosome": "13", "start_pos": 110293327, "end_pos": 110289166, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012861.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012861.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012521.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012521.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Regulation of acetylcholine-induced phosphorylation of PLD1 in porcine tracheal smooth muscle.", "journal": "Journal of biomedical science", "date": "2004", "authors": "Mamoon Abulkhair M, Baker Rodney C, Farley Jerry M", "evidence": [ { "database": "RefSeq", "id": "NP_001231518", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518" } ], "reference": [ { "type": "PubMed", "id": "15591778", "url": "https://glygen.org/publication/PubMed/15591778" } ] }, { "title": "Selective activation of nuclear phospholipase D-1 by g protein-coupled receptor agonists in vascular smooth muscle cells.", "journal": "Circulation research", "date": "2006-07-21", "authors": "Gayral St\u00e9phanie, D\u00e9l\u00e9ris Paul, Laulagnier Karine, Laffargue Muriel, Salles Jean-Pierre, Perret Bertrand, Record Michel, Breton-Douillon Monique", "evidence": [ { "database": "RefSeq", "id": "NP_001231518", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518" } ], "reference": [ { "type": "PubMed", "id": "16778131", "url": "https://glygen.org/publication/PubMed/16778131" } ] }, { "title": "The stimulatory effect of angiotensin II on Na(+)-ATPase activity involves sequential activation of phospholipases and sustained PKC activity.", "journal": "Biochimica et biophysica acta", "date": "2010-03", "authors": "De Souza Aloa Machado, de Carvalho Tha\u00eds Louise Gurj\u00e3o, Lara Lucienne da Silva, Gomes-Quintana Elaine, Lopes Anibal Gil, Caruso-Neves Celso", "evidence": [ { "database": "RefSeq", "id": "NP_001231518", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231518" } ], "reference": [ { "type": "PubMed", "id": "19958748", "url": "https://glygen.org/publication/PubMed/19958748" } ] }, { "title": "Genes of the pig, Sus scrofa, reconstructed with EvidentialGene.", "journal": "PeerJ", "date": "2019", "authors": "Gilbert Donald G", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "reference": [ { "type": "PubMed", "id": "30723633", "url": "https://glygen.org/publication/PubMed/30723633" } ] } ], "pathway": [ { "id": "ssc:100519446", "name": "", "url": "https://www.genome.jp/dbget-bin/get_linkdb?-t+pathway+ssc:100519446", "resource": "KEGG Pathway" }, { "id": "R-SSC-1483166", "name": "Synthesis of PA", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483166", "resource": "Reactome", "description": "Synthesis of PA" }, { "id": "R-SSC-2029485", "name": "Role of phospholipids in phagocytosis", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029485", "resource": "Reactome", "description": "Role of phospholipids in phagocytosis" }, { "id": "R-SSC-6798695", "name": "Neutrophil degranulation", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-8980692", "name": "RHOA GTPase cycle", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013148", "name": "CDC42 GTPase cycle", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "RAC1 GTPase cycle", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013408", "name": "RHOG GTPase cycle", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "resource": "Reactome", "description": "RHOG GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "P70496-1", "protein_name": "Phospholipase D1", "gene_name": "Pld1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"length": 1074 }, "evidence": [ { "id": "A0A286ZZD3", "url": "https://omabrowser.org/oma/group/A0A286ZZD3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q13393-1", "protein_name": "Phospholipase D1", "gene_name": "PLD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"MSLKSETRVNTSTLQKIAADMSNLIENLDTRELHFEGEEVEYDASPGDPKAQEGCIPFSSIYNTQGFKEPNIQTYLSGCPIKAQVLEVERFTSTSRVPSINLYTIELTHGEFTWQVKRKFKHFQEFHRELLKYKAFIRIPIPTKRHTFRRQNVKEEPREMPSLPRSSENAIQEEQFFGRRKQLEDYLTKILKMPMYRNYHATTEFLDVSQLSFIHDLGPKGLEGMIMKRSGGHRIPGVNCCGHGRACYRWSKRWLIVKDSFLLYMKPDSGAIAFVLLVDKEFRVKVGRKETETKYGLRIDNLSRTLILKCNSYRHARWWGGAIEEFIRKHGADFLKDHRFGSYAALHENTLAKWYVNAKGYFEDIANAMEEASEEIFITDWWLSPEIFLKRPVVEGNRWRLDCILKRKAQQGVRIFIMLYKEVELALGINSEYSKRTLMRLHPNIKVMRHPDHVSSSVYLWAHHEKLVIIDQSVAFVGGIDLAYGRWDDNEHRLTDVGSVKRVTSGLSLGSLTAASVESMESLSLKDKHEFHKKEPISKIVDETDMKLKGIGKSRKFSKFSLYRQLHRHHLHNADSISSIDSTSSYFSHCRSHQNLIHGLKPHLKLFHPSSESEQGLTRHSTDTGSIRSVQTGVGELHGETRFWHGKDYCNFVFKDWVQLDKPFADFIDRYSTPRMPWHDIGSVVHGKAARDVARHFIQRWNFTKIMKPKYRSLSYPFLLPKSQATAHELRYQVPGAVPAKVQLLRSAADWSAGIKHHEESIHAAYIHVIENSKHYIYIENQFFISCADDKVVFNKVGDRIAQRILKAHREGQRYRVYIVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGESSILEQLKPELGNKWINYISFCGLRTHAELEGNLVTELIYVHSKLLIADDNTVIIGSANINDRSMLGKRDSEMAVIVQDTETVPSVMDGKEYQAGRFARDLRLECFRLVLGYLSDPSEDLQDPVSDKFFKEIWVSTAARNATIYDKVFRCLPNDEVHNLIQLRDFINKPILAKEDALRAEEELRKIRGFLVQFPLYFLSEENLLPSVGTKEAIVPMEVWT", "length": 1074 }, "evidence": [ { "id": "A0A286ZZD3", "url": "https://omabrowser.org/oma/group/A0A286ZZD3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "N-acylphosphatidylethanolamine-specific phospholipase D activity", "id": "GO:0070290", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070290", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "phospholipase D activity", "id": "GO:0004630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004630", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "phosphatidic acid biosynthetic process", "id": "GO:0006654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006654", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "cellular response to nutrient", "id": "GO:0031670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031670", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "phospholipid catabolic process", "id": "GO:0009395", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009395", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "regulation of vesicle-mediated transport", "id": "GO:0060627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060627", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "positive regulation of translation", "id": "GO:0045727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045727", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "regulation of microvillus assembly", "id": "GO:0032534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032534", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "regulation of synaptic vesicle cycle", "id": "GO:0098693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098693", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "intracellular membrane-bounded organelle", "id": "GO:0043231", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043231", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "endocytic vesicle", "id": "GO:0030139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030139", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" }, { "name": "cholinergic synapse", "id": "GO:0098981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098981", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZD3", "url": "https://www.uniprot.org/uniprot/A0A286ZZD3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 702, "end_pos": 704, "annotation": "n_glycosylation_sequon" }, { "start_pos": 994, "end_pos": 996, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14445", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1,2-diacyl-sn-glycero-3-phosphate + choline + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14445", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14445" } ] }, { "id": "R-SSC-1483182", "name": "PC is hydrolyzed to PA and choline by PLD1/2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1483182", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483182" } ] }, { "id": "R-SSC-2029471", "name": "Hydrolysis of PC to PA by PLD", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2029471", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029471" } ] }, { "id": "R-SSC-6798747", "name": "Exocytosis of tertiary granule membrane proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane, tertiary granule membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798747", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798747" } ] }, { "id": "R-SSC-6799350", "name": "Exocytosis of specific granule membrane proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane, specific granule membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6799350", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799350" } ] }, { "id": "R-SSC-9013009", "name": "RHOA binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013009", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013009" } ] }, { "id": "R-SSC-9013145", "name": "RAC1 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013145", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013145" } ] }, { "id": "R-SSC-9013157", "name": "CDC42 binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9013157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013157" } ] }, { "id": "R-SSC-9014449", "name": "RHOG binds effectors at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9014449", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9014449" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 702, "end_pos": 704 }, { "start_pos": 994, "end_pos": 996 } ] }, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }