{
    "bcoid": "GLY_000884",
    "title": "SARS-CoV2 Gene Locus (Ensembl)",
    "description": "The SARS-CoV2 Gene Locus (Ensembl) contains sarscov2 [taxid:2697049] UniProtKB canonical accessions mapped ...",
    "filename": "sarscov2_protein_genelocus.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome coronavirus 2"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Gene Coordinates"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A663DJA2-1...",
                "ORF10..."
            ],
            [
                "P0DTC4-1...",
                "E..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "ensembl_gene_id"
                },
                {
                    "type": "string",
                    "label": "chromosome_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "strand"
                }
            ],
            [
                "A0A663DJA2-1",
                "ORF10",
                "ENSSASG00005000013",
                "MN908947.3",
                "29558",
                "29674",
                "0"
            ],
            [
                "P0DTC4-1",
                "E",
                "ENSSASG00005000010",
                "MN908947.3",
                "26245",
                "26472",
                "0"
            ],
            [
                "P0DTC2-1",
                "S",
                "ENSSASG00005000004",
                "MN908947.3",
                "21563",
                "25384",
                "0"
            ],
            [
                "P0DTC9-1",
                "N",
                "ENSSASG00005000005",
                "MN908947.3",
                "28274",
                "29533",
                "0"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Gene Locus (Ensembl)\n\nVersion\n   - v-2.3.1\n\nCreated on\n  - \n\nModified on\n   - 2024-01-09T20:26:01\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS-CoV2 Gene Locus (Ensembl) contains sarscov2 [taxid:2697049] UniProtKB canonical accessions mapped to the corresponding ensembl Gene ID, chromosome ID along with the gene's start and end position on the chromosome. The dataset is derived from 2019-09 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - gene coordinates\n   - start position\n   - end position\n   - Ensembl\n   - strand\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are mapped to ENSEMBL Gene identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_protein_masterlist.csv\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-sars-cov-2.nt\n   Output Subdomain\n      Name: sarscov2_protein_genelocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_protein_genelocus.csv\n      Name: sarscov2_protein_genelocus.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_protein_genelocus.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"4\"\n      Name: \"gene_symbol\"\n     Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n      Unique Values: \"4\"\n      Name: \"ensembl_gene_id\"\n     Description: \"Gene Identifier in Ensembl database\"\n      Unique Values: \"4\"\n      Name: \"chromosome_id\"\n     Description: \"Chromosome number identifier\"\n      Unique Values: \"1\"\n      Name: \"start_pos\"\n     Description: \"Start position of the gene on the chromosome\"\n      Unique Values: \"4\"\n      Name: \"end_pos\"\n     Description: \"End position of the gene on the chromosome\"\n      Unique Values: \"4\"\n      Name: \"strand\"\n     Description: \"The strand of the gene\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/sarscov2_protein_genelocus.csv"
}