{ "bcoid": "GLY_000883", "title": "Yeast Protein Diseases", "description": "The Yeast Protein Diseases contains diseases associated with the yeast [taxid:559292] protein UniProtKB ...", "filename": "yeast_protein_disease_alliance_genome.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Diseases" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P25385-1...", "protein_xref..." ], [ "P00854-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "do_id" }, { "type": "string", "label": "mondo_id" }, { "type": "string", "label": "mim_id" } ], [ "P25385-1", "protein_xref_genome_alliance", 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\n\nModified on\n - 2024-01-09T20:18:30\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Yeast Protein Diseases contains diseases associated with the yeast [taxid:559292] protein UniProtKB canonical accessions. The dataset also contains mapping of UniProtKB canonical accessions to the Disease Ontology (DO), Mondo and OMIM resources. If you use this dataset please provide proper attribution to GlyGen and Alliance of Genome Resources.\n\nDescription Domain\n Keywords\n - disease\n - yeast\n - mim\n - do\n - mondo\n\n Pipeline Steps\n - Step-1: \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: protein_disease_idmap.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/protein_disease_idmap.csv\n Name: yeast_protein_xref_sgd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_xref_sgd.csv\n Name: yeast_disease_genome_alliance.tsv\n URI: https:/data.glygen.org/ln2downloads/alliance_genome/2023_10_24/yeast_disease_genome_alliance.tsv\n Output Subdomain\n Name: yeast_protein_disease_alliance_genome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_disease_alliance_genome.csv\n Name: yeast_protein_disease_alliance_genome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_disease_alliance_genome.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1895\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"2390\"\n Name: \"do_id\"\n Description: \"Disease Ontology identifier\"\n Unique Values: \"2390\"\n Name: \"mondo_id\"\n Description: \"The Mondo Disease Ontology (MONDO) identifier\"\n Unique Values: \"1586\"\n Name: \"mim_id\"\n Description: \"Disease ID from the OMIM database\"\n Unique Values: \"1588\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/yeast_protein_disease_alliance_genome.csv" }