{ "bcoid": "GLY_000878", "title": "Dicty Protein Xref NCBI RefSeq", "description": "The Dicty UniProtKB Xref NCBI RefSeq contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced ...", "filename": "dicty_protein_xref_refseq.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "NCBI RefSeq cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54PT0-1...", "protein_xref..." ], [ "Q54PT1-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q54PT0-1", "protein_xref_refseq", "XP_638574", "" ], [ "Q54PT1-1", "protein_xref_refseq", "XP_638573", "" ], [ "Q54PT2-1", "protein_xref_refseq", "XP_638572", "" ], [ "Q54PT3-1", "protein_xref_refseq", "XP_638571", "" ], [ "Q54PT4-1", "protein_xref_refseq", "XP_638570", "" ], [ "Q54PT5-1", "protein_xref_refseq", "XP_638569", "" ], [ "Q54PT6-1", "protein_xref_refseq", "XP_638568", "" ], [ "Q54PT7-1", "protein_xref_refseq", "XP_638567", "" ], [ "Q54PT8-1", "protein_xref_refseq", "XP_638566", "" ], [ "Q54PT9-1", "protein_xref_refseq", "XP_638706", "" ], [ "Q54N46-1", "protein_xref_refseq", "XP_638097", "" ], [ "Q54N47-1", "protein_xref_refseq", "XP_638096", "" ], [ "Q54N44-1", "protein_xref_refseq", "XP_638099", "" ], [ "Q54N45-1", "protein_xref_refseq", "XP_638098", "" ], [ "Q54N42-1", "protein_xref_refseq", "XP_638101", "" ], [ "Q54N43-1", "protein_xref_refseq", "XP_638100", "" ], [ "Q54N40-1", "protein_xref_refseq", "XP_638103", "" ], [ "Q54N41-1", "protein_xref_refseq", "XP_638102", "" ], [ "Q54N48-1", "protein_xref_refseq", "XP_638095", "" ], [ "Q54N49-1", "protein_xref_refseq", "XP_638094", "" ], [ "Q54EB1-1", "protein_xref_refseq", "XP_635329", "" ], [ "Q54QV8-1", "protein_xref_refseq", "XP_639026", "" ], [ "Q54EB6-1", "protein_xref_refseq", "XP_635324", "" ], [ "Q54QV1-1", "protein_xref_refseq", "XP_638922", "" ], [ "O96070-1", "protein_xref_refseq", "XP_635781", "" ], [ "Q54QV0-1", "protein_xref_refseq", "XP_638923", "" ], [ "Q54QV4-1", "protein_xref_refseq", "XP_639030", "" ], [ "Q86AV4-1", "protein_xref_refseq", "XP_642827", "" ], [ "Q86AV5-1", "protein_xref_refseq", "XP_642825", "" ], [ "Q86AV6-1", "protein_xref_refseq", "XP_642824", "" ], [ "Q86HC9-1", "protein_xref_refseq", "XP_643476", "" ], [ "Q86HC2-1", "protein_xref_refseq", "XP_643489", "" ], [ "Q86HC3-1", "protein_xref_refseq", "XP_643488", "" ], [ "Q86HC7-1", "protein_xref_refseq", "XP_643479", "" ], [ "Q86HC4-1", "protein_xref_refseq", "XP_643486", "" ], [ "Q86HC5-1", "protein_xref_refseq", "XP_643482", "" ], [ "Q7Z1I0-1", "protein_xref_refseq", "XP_636023", "" ], [ "Q55BJ9-1", "protein_xref_refseq", "XP_645815", "" ], [ "Q55BJ8-1", "protein_xref_refseq", "XP_645816", "" ], [ "Q55BJ3-1", "protein_xref_refseq", "XP_645821", "" ], [ "Q55BJ2-1", "protein_xref_refseq", "XP_645822", "" ], [ "Q55BJ1-1", "protein_xref_refseq", "XP_645823", "" ], [ "Q55BJ0-1", "protein_xref_refseq", "XP_645824", "" ], [ "Q55BJ7-1", "protein_xref_refseq", "XP_645817", "" ], [ "Q55BJ6-1", "protein_xref_refseq", "XP_645818", "" ], [ "Q55BJ5-1", "protein_xref_refseq", "XP_645819", "" ], [ "Q55BJ4-1", "protein_xref_refseq", "XP_645820", "" ], [ "Q54GS1-1", "protein_xref_refseq", "XP_635998", "" ], [ "Q54JJ0-1", "protein_xref_refseq", "XP_636941", "" ], [ "Q54JJ1-1", "protein_xref_refseq", "XP_636940", "" ], [ "Q54JJ3-1", "protein_xref_refseq", "XP_636938", "" ], [ "Q54JJ4-1", "protein_xref_refseq", "XP_636937", "" ], [ "Q54JJ5-1", "protein_xref_refseq", "XP_636936", "" ], [ "Q54JJ6-1", "protein_xref_refseq", "XP_636935", "" ], [ "Q54JJ7-1", "protein_xref_refseq", "XP_636934", "" ], [ "Q54JJ8-1", "protein_xref_refseq", "XP_636933", "" ], [ "Q54JJ9-1", "protein_xref_refseq", "XP_636932", "" ], [ "Q54GS8-1", "protein_xref_refseq", "XP_635991", "" ], [ "Q54GS9-1", "protein_xref_refseq", "XP_635990", "" ], [ "Q86K98-1", "protein_xref_refseq", "XP_642551", "" ], [ "Q86K96-1", "protein_xref_refseq", "XP_642806", "" ], [ "Q86K95-1", "protein_xref_refseq", "XP_642805", "" ], [ "Q86K94-1", "protein_xref_refseq", "XP_642804", "" ], [ "Q86K93-1", "protein_xref_refseq", "XP_642803", "" ], [ "Q86K92-1", "protein_xref_refseq", "XP_642682", "" ], [ "Q86K91-1", "protein_xref_refseq", "XP_642685", "" ], [ "Q86K90-1", "protein_xref_refseq", "XP_642686", "" ], [ "Q9U3X4-1", "protein_xref_refseq", "XP_641069", "" ], [ "Q54KL3-1", "protein_xref_refseq", "XP_637304", "" ], [ "Q54KL2-1", "protein_xref_refseq", "XP_637305", "" ], [ "Q54WP9-1", "protein_xref_refseq", "XP_641668", "" ], [ "Q54KL0-1", "protein_xref_refseq", "XP_637307", "" ], [ "Q54KL7-1", "protein_xref_refseq", "XP_637340", "" ], [ "Q558Y9-1", "protein_xref_refseq", "XP_644927", "" ], [ "Q54KL5-1", "protein_xref_refseq", "XP_637302", "" ], [ "Q54KL4-1", "protein_xref_refseq", "XP_637303", "" ], [ "Q54WP3-1", "protein_xref_refseq", "XP_641674", "" ], [ "Q558Y5-1", "protein_xref_refseq", "XP_644931", "" ], [ "Q54KL9-1", "protein_xref_refseq", "XP_637338", "" ], [ "Q54KL8-1", "protein_xref_refseq", "XP_637339", "" ], [ "Q54WP7-1", "protein_xref_refseq", "XP_641670", "" ], [ "Q54WP6-1", "protein_xref_refseq", "XP_641671", "" ], [ "Q54WP5-1", "protein_xref_refseq", "XP_641672", "" ], [ "Q54WP4-1", "protein_xref_refseq", "XP_641673", "" ] ] }, "readme": "Name\n - Dicty Protein Xref NCBI RefSeq\n\nVersion\n - v-2.3.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T05:55:40\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty UniProtKB Xref NCBI RefSeq contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced to NCBI RefSeq database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\",\n \"NCBI Reference Sequence (RefSeq) collection provides a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins..\n\nDescription Domain\n Keywords\n - protein information\n - protein length\n - NCBI RefSeq\n - protein summary\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to NCBI RefSeq database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_refseq.csv\n Name: dicty_protein_xref_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"12714\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"12710\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_protein_xref_refseq.csv" }