{
    "bcoid": "GLY_000873",
    "title": "Dicty UniProtKB Xref PANTHER",
    "description": "The Dicty UniProtKB Xref PANTHER contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced ...",
    "filename": "dicty_protein_xref_panther.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Dictyostelium discoideum"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "PANTHER cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q54PT0-1...",
                "protein_xref..."
            ],
            [
                "Q54PT0-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "Q54PT0-1",
                "protein_xref_panther",
                "PTHR43115",
                "DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11"
            ],
            [
                "Q54PT0-1",
                "protein_xref_panther",
                "PTHR43115:SF4",
                "DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11"
            ],
            [
                "Q54PT1-1",
                "protein_xref_panther",
                "PTHR11106",
                "GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED"
            ],
            [
                "Q54PT1-1",
                "protein_xref_panther",
                "PTHR11106:SF72",
                "GANGLIOSIDE-INDUCED DIFFERENTIATION-ASSOCIATED PROTEIN 2"
            ],
            [
                "Q54PT2-1",
                "protein_xref_panther",
                "PTHR23074:SF83",
                "VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4A"
            ],
            [
                "Q54PT2-1",
                "protein_xref_panther",
                "PTHR23074",
                "AAA DOMAIN-CONTAINING"
            ],
            [
                "Q54PT3-1",
                "protein_xref_panther",
                "PTHR24292:SF54",
                "CYP9F3-RELATED"
            ],
            [
                "Q54PT3-1",
                "protein_xref_panther",
                "PTHR24292",
                "CYTOCHROME P450"
            ],
            [
                "Q54PT4-1",
                "protein_xref_panther",
                "PTHR11265",
                "S-ADENOSYL-METHYLTRANSFERASE MRAW"
            ],
            [
                "Q54PT4-1",
                "protein_xref_panther",
                "PTHR11265:SF0",
                "12S RRNA N4-METHYLCYTIDINE METHYLTRANSFERASE"
            ],
            [
                "Q54PT5-1",
                "protein_xref_panther",
                "PTHR31142",
                "TOBAMOVIRUS MULTIPLICATION PROTEIN 1-LIKE ISOFORM X1"
            ],
            [
                "Q54PT5-1",
                "protein_xref_panther",
                "PTHR31142:SF2",
                "DUF1084 DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q54PT6-1",
                "protein_xref_panther",
                "PTHR21024",
                "GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED"
            ],
            [
                "Q54PT6-1",
                "protein_xref_panther",
                "PTHR21024:SF0",
                "ELECTRON TRANSFER FLAVOPROTEIN REGULATORY FACTOR 1"
            ],
            [
                "Q54PT7-1",
                "protein_xref_panther",
                "PTHR11480",
                "SAPOSIN-RELATED"
            ],
            [
                "Q54PT7-1",
                "protein_xref_panther",
                "PTHR11480:SF84",
                "BCDNA.GH08312"
            ],
            [
                "Q54PT8-1",
                "protein_xref_panther",
                "PTHR10825",
                "RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT"
            ],
            [
                "Q54PT8-1",
                "protein_xref_panther",
                "PTHR10825:SF72",
                "POLYCOMB GROUP PROTEIN PSC-RELATED"
            ],
            [
                "Q54PT9-1",
                "protein_xref_panther",
                "PTHR13029",
                "UNCHARACTERIZED"
            ],
            [
                "Q54PT9-1",
                "protein_xref_panther",
                "PTHR13029:SF20",
                "MYELIN GENE REGULATORY FACTOR-LIKE A"
            ],
            [
                "Q54N46-1",
                "protein_xref_panther",
                "PTHR23504:SF31",
                "MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10"
            ],
            [
                "Q54N46-1",
                "protein_xref_panther",
                "PTHR23504",
                "MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10"
            ],
            [
                "Q54N47-1",
                "protein_xref_panther",
                "PTHR11825",
                "SUBGROUP IIII AMINOTRANSFERASE"
            ],
            [
                "Q54N47-1",
                "protein_xref_panther",
                "PTHR11825:SF44",
                "BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE"
            ],
            [
                "Q54N44-1",
                "protein_xref_panther",
                "PTHR12661",
                "PETER PAN-RELATED"
            ],
            [
                "Q54N44-1",
                "protein_xref_panther",
                "PTHR12661:SF5",
                "SUPPRESSOR OF SWI4 1 HOMOLOG"
            ],
            [
                "Q54N45-1",
                "protein_xref_panther",
                "PTHR12040",
                "ANTI-SILENCING PROTEIN 1"
            ],
            [
                "Q54N45-1",
                "protein_xref_panther",
                "PTHR12040:SF0",
                "HISTONE CHAPERONE ASF1"
            ],
            [
                "Q54N42-1",
                "protein_xref_panther",
                "PTHR10989",
                "ANDROGEN-INDUCED PROTEIN 1-RELATED"
            ],
            [
                "Q54N42-1",
                "protein_xref_panther",
                "PTHR10989:SF16",
                "AT02829P-RELATED"
            ],
            [
                "Q54N40-1",
                "protein_xref_panther",
                "PTHR12888",
                "PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12"
            ],
            [
                "Q54N40-1",
                "protein_xref_panther",
                "PTHR12888:SF0",
                "PEROXISOME ASSEMBLY PROTEIN 12"
            ],
            [
                "Q54N41-1",
                "protein_xref_panther",
                "PTHR13021",
                "PRE-MRNA-SPLICING FACTOR ISY1"
            ],
            [
                "Q54N41-1",
                "protein_xref_panther",
                "PTHR13021:SF8",
                "PRE-MRNA-SPLICING FACTOR ISY1 HOMOLOG"
            ],
            [
                "Q54N48-1",
                "protein_xref_panther",
                "PTHR12755",
                "CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P"
            ],
            [
                "Q54N48-1",
                "protein_xref_panther",
                "PTHR12755:SF6",
                "POLYRIBONUCLEOTIDE 5'-HYDROXYL-KINASE CLP1"
            ],
            [
                "Q54N49-1",
                "protein_xref_panther",
                "PTHR11510",
                "MYO-INOSITOL-1 PHOSPHATE SYNTHASE"
            ],
            [
                "Q54N49-1",
                "protein_xref_panther",
                "PTHR11510:SF5",
                "INOSITOL-3-PHOSPHATE SYNTHASE 1"
            ],
            [
                "Q54EB1-1",
                "protein_xref_panther",
                "PTHR31635",
                "REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED"
            ],
            [
                "Q54EB1-1",
                "protein_xref_panther",
                "PTHR31635:SF193",
                "REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q54EB6-1",
                "protein_xref_panther",
                "PTHR22838:SF4",
                "WD REPEAT-CONTAINING PROTEIN 13"
            ],
            [
                "Q54EB6-1",
                "protein_xref_panther",
                "PTHR22838",
                "WD REPEAT PROTEIN 26-RELATED"
            ],
            [
                "Q54QV1-1",
                "protein_xref_panther",
                "PTHR12363:SF28",
                "IMPORTIN N-TERMINAL DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q54QV1-1",
                "protein_xref_panther",
                "PTHR12363",
                "TRANSPORTIN 3 AND IMPORTIN 13"
            ],
            [
                "O96070-1",
                "protein_xref_panther",
                "PTHR31093",
                "CELL SURFACE GLYCOPROTEIN GP138-RELATED-RELATED"
            ],
            [
                "O96070-1",
                "protein_xref_panther",
                "PTHR31093:SF4",
                "CELL SURFACE GLYCOPROTEIN GP138-RELATED"
            ],
            [
                "Q54QV0-1",
                "protein_xref_panther",
                "PTHR22599",
                "MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB"
            ],
            [
                "Q54QV0-1",
                "protein_xref_panther",
                "PTHR22599:SF61",
                "MOB KINASE ACTIVATOR-LIKE 2"
            ],
            [
                "Q54QV4-1",
                "protein_xref_panther",
                "PTHR19924",
                "UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER"
            ],
            [
                "Q54QV4-1",
                "protein_xref_panther",
                "PTHR19924:SF26",
                "U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 HOMOLOG"
            ],
            [
                "Q86AV4-1",
                "protein_xref_panther",
                "PTHR31836:SF2",
                "EXPANSIN-LIKE PROTEIN 3-RELATED"
            ],
            [
                "Q86AV5-1",
                "protein_xref_panther",
                "PTHR45678",
                "MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED"
            ],
            [
                "Q86AV5-1",
                "protein_xref_panther",
                "PTHR45678:SF15",
                "MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN X"
            ],
            [
                "Q86AV6-1",
                "protein_xref_panther",
                "PTHR42871",
                "CITRATE SYNTHASE"
            ],
            [
                "Q86AV6-1",
                "protein_xref_panther",
                "PTHR42871:SF1",
                "CITRATE SYNTHASE"
            ],
            [
                "Q86HC9-1",
                "protein_xref_panther",
                "PTHR12482",
                "UNCHARACTERIZED"
            ],
            [
                "Q86HC9-1",
                "protein_xref_panther",
                "PTHR12482:SF62",
                "LIPASE ROG1-RELATED"
            ],
            [
                "Q86HC7-1",
                "protein_xref_panther",
                "PTHR12059",
                "RIBOSOMAL PROTEIN L23-RELATED"
            ],
            [
                "Q86HC7-1",
                "protein_xref_panther",
                "PTHR12059:SF5",
                "39S RIBOSOMAL PROTEIN L23, MITOCHONDRIAL"
            ],
            [
                "Q7Z1I0-1",
                "protein_xref_panther",
                "PTHR31599",
                "CALCIUM UP-REGULATED PROTEIN A-RELATED"
            ],
            [
                "Q7Z1I0-1",
                "protein_xref_panther",
                "PTHR31599:SF2",
                "CALCIUM UP-REGULATED PROTEIN A-RELATED"
            ],
            [
                "Q55BJ9-1",
                "protein_xref_panther",
                "PTHR11404",
                "SUPEROXIDE DISMUTASE 2"
            ],
            [
                "Q55BJ9-1",
                "protein_xref_panther",
                "PTHR11404:SF6",
                "SUPEROXIDE DISMUTASE [MN], MITOCHONDRIAL"
            ],
            [
                "Q55BJ3-1",
                "protein_xref_panther",
                "PTHR15976",
                "CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA"
            ],
            [
                "Q55BJ3-1",
                "protein_xref_panther",
                "PTHR15976:SF16",
                "XPG_I_2 DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q55BJ2-1",
                "protein_xref_panther",
                "PTHR11097:SF14",
                "EXOSOME COMPLEX COMPONENT RRP45"
            ],
            [
                "Q55BJ2-1",
                "protein_xref_panther",
                "PTHR11097",
                "EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN"
            ],
            [
                "Q55BJ6-1",
                "protein_xref_panther",
                "PTHR12370",
                "PHOSPHOLIPASE B-RELATED"
            ],
            [
                "Q55BJ6-1",
                "protein_xref_panther",
                "PTHR12370:SF4",
                "PHOSPHOLIPASE B-LIKE PROTEIN B-RELATED"
            ],
            [
                "Q54GS1-1",
                "protein_xref_panther",
                "PTHR21481",
                "UNCHARACTERIZED"
            ],
            [
                "Q54GS1-1",
                "protein_xref_panther",
                "PTHR21481:SF0",
                "PROTEIN CLEC16A"
            ],
            [
                "Q54JJ1-1",
                "protein_xref_panther",
                "PTHR11079",
                "CYTOSINE DEAMINASE FAMILY MEMBER"
            ],
            [
                "Q54JJ1-1",
                "protein_xref_panther",
                "PTHR11079:SF161",
                "CMP/DCMP-TYPE DEAMINASE DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q54JJ3-1",
                "protein_xref_panther",
                "PTHR11711:SF353",
                "ADP-RIBOSYLATION FACTOR F-RELATED"
            ],
            [
                "Q54JJ3-1",
                "protein_xref_panther",
                "PTHR11711",
                "ADP RIBOSYLATION FACTOR-RELATED"
            ],
            [
                "Q54JJ5-1",
                "protein_xref_panther",
                "PTHR44942",
                "METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q54JJ5-1",
                "protein_xref_panther",
                "PTHR44942:SF4",
                "METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN"
            ],
            [
                "Q54JJ6-1",
                "protein_xref_panther",
                "PTHR21575",
                "PROTEIN HID1"
            ],
            [
                "Q54JJ6-1",
                "protein_xref_panther",
                "PTHR21575:SF12",
                "PROTEIN HID1"
            ],
            [
                "Q54JJ7-1",
                "protein_xref_panther",
                "PTHR23346:SF19",
                "PROTEASOME ADAPTER AND SCAFFOLD PROTEIN ECM29"
            ],
            [
                "Q54JJ7-1",
                "protein_xref_panther",
                "PTHR23346",
                "TRANSLATIONAL ACTIVATOR GCN1-RELATED"
            ],
            [
                "Q54JJ9-1",
                "protein_xref_panther",
                "PTHR31378",
                "EGF-LIKE DOMAIN-CONTAINING PROTEIN-RELATED-RELATED"
            ],
            [
                "Q54JJ9-1",
                "protein_xref_panther",
                "PTHR31378:SF29",
                "EGF-LIKE DOMAIN-CONTAINING PROTEIN-RELATED"
            ],
            [
                "Q54GS8-1",
                "protein_xref_panther",
                "PTHR13230",
                "GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5"
            ]
        ]
    },
    "readme": "Name\n   - Dicty UniProtKB Xref PANTHER\n\nVersion\n   - v-2.3.1\n\nCreated on\n  - \n\nModified on\n   - 2024-01-09T05:40:37\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Dicty UniProtKB Xref PANTHER contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\",\n        The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n   Keywords\n   - protein family\n   - PANTHER\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-dictyostelium-discoideum.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n   Output Subdomain\n      Name: dicty_protein_xref_panther.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_panther.csv\n      Name: dicty_protein_xref_panther.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_panther.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"9057\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"9582\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"7634\"",
    "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_protein_xref_panther.csv"
}