{ "bcoid": "GLY_000872", "title": "Dicty UniProtKB Xref OMA", "description": "The Dicty UniProtKB Xref OMA contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced ...", "filename": "dicty_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "OMA cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54PT0-1...", "protein_xref..." ], [ "Q54PT1-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q54PT0-1", "protein_xref_oma", "VFDRKWN", "" ], [ "Q54PT1-1", "protein_xref_oma", "VHLFRYV", "" ], [ "Q54PT2-1", "protein_xref_oma", "MFELNVG", "" ], [ "Q54PT3-1", "protein_xref_oma", "WYPIVEI", "" ], [ "Q54PT4-1", "protein_xref_oma", "NPAKRTF", "" ], [ "Q54PT5-1", "protein_xref_oma", "IVLFIWV", "" ], [ "Q54PT6-1", "protein_xref_oma", "MNRFHKY", "" ], [ "Q54PT7-1", "protein_xref_oma", "MEHADIC", "" ], [ "Q54PT8-1", "protein_xref_oma", "VTRSKIW", "" ], [ "Q54PT9-1", "protein_xref_oma", "EYCIVSY", "" ], [ "Q54N46-1", "protein_xref_oma", "LDCETAK", "" ], [ "Q54N47-1", "protein_xref_oma", "LTEVFAC", "" ], [ "Q54N44-1", "protein_xref_oma", "MWHEYIH", "" ], [ "Q54N45-1", "protein_xref_oma", "NNDYADQ", "" ], [ "Q54N42-1", "protein_xref_oma", "CVRCDSD", "" ], [ "Q54N43-1", "protein_xref_oma", "WIVILRD", "" ], [ "Q54N40-1", "protein_xref_oma", "ALEWHYL", "" ], [ "Q54N41-1", "protein_xref_oma", "SCEKWRG", "" ], [ "Q54N48-1", "protein_xref_oma", "VQYVNCH", "" ], [ "Q54N49-1", "protein_xref_oma", "EHDLFIQ", "" ], [ "Q54QV8-1", "protein_xref_oma", "DQYLTAK", "" ], [ "Q54EB6-1", "protein_xref_oma", "MLKFANN", "" ], [ "Q54QV1-1", "protein_xref_oma", "KPVYFQL", "" ], [ "O96070-1", "protein_xref_oma", "TENIIVT", "" ], [ "Q54QV0-1", "protein_xref_oma", "EVENDWI", "" ], [ "Q54QV4-1", "protein_xref_oma", "WRGYKTP", "" ], [ "Q86AV4-1", "protein_xref_oma", "CNDAGYC", "" ], [ "Q86AV5-1", "protein_xref_oma", "KIWQHEG", "" ], [ "Q86AV6-1", "protein_xref_oma", "HWREYMV", "" ], [ "Q86HC9-1", "protein_xref_oma", "IVHCSRR", "" ], [ "Q86HC3-1", "protein_xref_oma", "RISFFNQ", "" ], [ "Q7Z1I0-1", "protein_xref_oma", "YVWISEQ", "" ], [ "Q55BJ9-1", "protein_xref_oma", "YEGWKGE", "" ], [ "Q55BJ8-1", "protein_xref_oma", "SIDHITD", "" ], [ "Q55BJ3-1", "protein_xref_oma", "IEEWMVD", "" ], [ "Q55BJ2-1", "protein_xref_oma", "HPPHERE", "" ], [ "Q55BJ1-1", "protein_xref_oma", "FSKNMNW", "" ], [ "Q55BJ6-1", "protein_xref_oma", "QAIMRYN", "" ], [ "Q55BJ4-1", "protein_xref_oma", "MNNVVHN", "" ], [ "Q54GS1-1", "protein_xref_oma", "AEVMIWG", "" ], [ "Q54JJ0-1", "protein_xref_oma", "YIMASLE", "" ], [ "Q54JJ1-1", "protein_xref_oma", "PPCENNA", "" ], [ "Q54JJ3-1", "protein_xref_oma", "KWFIQPT", "" ], [ "Q54JJ5-1", "protein_xref_oma", "DMEQEMS", "" ], [ "Q54JJ6-1", "protein_xref_oma", "IFEDDKW", "" ], [ "Q54JJ7-1", "protein_xref_oma", "KFMQLAR", "" ], [ "Q54JJ8-1", "protein_xref_oma", "WQFATGI", "" ], [ "Q54JJ9-1", "protein_xref_oma", "DEEYSIC", "" ], [ "Q54GS8-1", "protein_xref_oma", "YVCEGMA", "" ], [ "Q54GS9-1", "protein_xref_oma", "RIVIRFK", "" ], [ "Q86K96-1", "protein_xref_oma", "CVVMGSR", "" ], [ "Q86K95-1", "protein_xref_oma", "FKIRENL", "" ], [ "Q86K94-1", "protein_xref_oma", "MVQMQVQ", "" ], [ "Q86K93-1", "protein_xref_oma", "NKRQMAK", "" ], [ "Q86K90-1", "protein_xref_oma", "DHVNIIM", "" ], [ "Q9U3X4-1", "protein_xref_oma", "DPIPIQP", "" ], [ "Q54KL2-1", "protein_xref_oma", "HFNVQDP", "" ], [ "Q54WP9-1", "protein_xref_oma", "FAMCFDQ", "" ], [ "Q54KL0-1", "protein_xref_oma", "SCSERMA", "" ], [ "Q54KL7-1", "protein_xref_oma", "CLNTCIC", "" ], [ "Q558Y9-1", "protein_xref_oma", "TESISNC", "" ], [ "Q54KL5-1", "protein_xref_oma", "LIKIWGS", "" ], [ "Q54KL4-1", "protein_xref_oma", "YISIGEY", "" ], [ "Q54WP3-1", "protein_xref_oma", "ISQIWAG", "" ], [ "Q558Y5-1", "protein_xref_oma", "WESNINI", "" ], [ "Q54WP6-1", "protein_xref_oma", "FSCASAG", "" ], [ "Q54WP5-1", "protein_xref_oma", "PTTAIYY", "" ], [ "Q54WP4-1", "protein_xref_oma", "NQGANIR", "" ], [ "Q54T68-1", "protein_xref_oma", "ISPNCKI", "" ], [ "Q54T63-1", "protein_xref_oma", "QCISGPI", "" ], [ "Q54T60-1", "protein_xref_oma", "VHITFVD", "" ], [ "Q54T61-1", "protein_xref_oma", "KKGKHYM", "" ], [ "Q54T66-1", "protein_xref_oma", "HETIMMI", "" ], [ "Q54T65-1", "protein_xref_oma", "RIPRYVM", "" ], [ "Q55E99-1", "protein_xref_oma", "HYINIWI", "" ], [ "Q55E98-1", "protein_xref_oma", "EIFYGAY", "" ], [ "Q55E95-1", "protein_xref_oma", "CMMNKTS", "" ], [ "Q55E94-1", "protein_xref_oma", "AATTCHW", "" ], [ "Q55E97-1", "protein_xref_oma", "PIKIECW", "" ], [ "Q55E91-1", "protein_xref_oma", "CFFKQKQ", "" ], [ "Q55E90-1", "protein_xref_oma", "WMWKVPS", "" ], [ "Q55E92-1", "protein_xref_oma", "PLGQDCW", "" ], [ "Q54H84-1", "protein_xref_oma", "RDSHYND", "" ], [ "Q54H85-1", "protein_xref_oma", "MSYYEST", "" ] ] }, "readme": "Name\n - Dicty UniProtKB Xref OMA\n\nVersion\n - v-2.3.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T05:38:46\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty UniProtKB Xref OMA contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\",\n The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes.\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_xref_oma.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_oma.csv\n Name: dicty_protein_xref_oma.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"8588\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"8590\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_protein_xref_oma.csv" }