{ "bcoid": "GLY_000864", "title": "Dicty UniProtKB Xref CDD", "description": "The Dicty UniProtKB Xref CDD contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced ...", "filename": "dicty_protein_xref_cdd.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "CDD cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54PT0-1...", "protein_xref..." ], [ "Q54PT1-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q54PT0-1", "protein_xref_cdd", "cd05233", "SDR_c" ], [ "Q54PT1-1", "protein_xref_cdd", "cd00170", "SEC14" ], [ "Q54PT1-1", "protein_xref_cdd", "cd02905", "Macro_GDAP2-like" ], [ "Q54PT2-1", "protein_xref_cdd", "cd02678", "MIT_VPS4" ], [ "Q54PT2-1", "protein_xref_cdd", "cd19521", "RecA-like_VPS4" ], [ "Q54PT3-1", "protein_xref_cdd", "cd00302", "cytochrome_P450" ], [ "Q54PT6-1", "protein_xref_cdd", "cd20265", "Complex1_LYR_ETFRF1_LYRM5" ], [ "Q54PT8-1", "protein_xref_cdd", "cd21669", "SMP_SF" ], [ "Q54N47-1", "protein_xref_cdd", "cd01557", "BCAT_beta_family" ], [ "Q54N40-1", "protein_xref_cdd", "cd16451", "mRING_PEX12" ], [ "Q86AV4-1", "protein_xref_cdd", "cd22271", "DPBB_EXP_N-like" ], [ "Q86AV6-1", "protein_xref_cdd", "cd06115", "AthCS_per_like" ], [ "Q7Z1I0-1", "protein_xref_cdd", "cd00161", "RICIN" ], [ "Q55BJ2-1", "protein_xref_cdd", "cd11368", "RNase_PH_RRP45" ], [ "Q54JJ1-1", "protein_xref_cdd", "cd01285", "nucleoside_deaminase" ], [ "Q54JJ3-1", "protein_xref_cdd", "cd00878", "Arf_Arl" ], [ "Q54JJ5-1", "protein_xref_cdd", "cd02440", "AdoMet_MTases" ], [ "Q54GS9-1", "protein_xref_cdd", "cd13153", "KOW_GPKOW_B" ], [ "Q86K96-1", "protein_xref_cdd", "cd00293", "USP_Like" ], [ "Q86K95-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "Q86K95-1", "protein_xref_cdd", "cd00014", "CH_SF" ], [ "Q86K94-1", "protein_xref_cdd", "cd14942", "TRAPPC3_bet3" ], [ "Q86K90-1", "protein_xref_cdd", "cd18795", "SF2_C_Ski2" ], [ "Q54KL2-1", "protein_xref_cdd", "cd05227", "AR_SDR_e" ], [ "Q54WP9-1", "protein_xref_cdd", "cd00200", "WD40" ], [ "Q54KL5-1", "protein_xref_cdd", "cd00200", "WD40" ], [ "Q54T65-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "Q55E94-1", "protein_xref_cdd", "cd01434", "EFG_mtEFG1_IV" ], [ "Q55E94-1", "protein_xref_cdd", "cd04097", "mtEFG1_C" ], [ "Q55E94-1", "protein_xref_cdd", "cd16262", "EFG_III" ], [ "Q55E94-1", "protein_xref_cdd", "cd01886", "EF-G" ], [ "Q55E94-1", "protein_xref_cdd", "cd04091", "mtEFG1_II_like" ], [ "Q55E97-1", "protein_xref_cdd", "cd04047", "C2B_Copine" ], [ "Q55E90-1", "protein_xref_cdd", "cd00200", "WD40" ], [ "Q55E93-1", "protein_xref_cdd", "cd14704", "bZIP_HY5-like" ], [ "Q55E92-1", "protein_xref_cdd", "cd05374", "17beta-HSD-like_SDR_c" ], [ "Q54H89-1", "protein_xref_cdd", "cd19756", "Bbox2" ], [ "P22887-1", "protein_xref_cdd", "cd04413", "NDPk_I" ], [ "Q86CZ2-1", "protein_xref_cdd", "cd00082", "HisKA" ], [ "Q86CZ2-1", "protein_xref_cdd", "cd16922", "HATPase_EvgS-ArcB-TorS-like" ], [ "Q86CZ2-1", "protein_xref_cdd", "cd17546", "REC_hyHK_CKI1_RcsC-like" ], [ "Q869X2-1", "protein_xref_cdd", "cd00833", "PKS" ], [ "Q869X2-1", "protein_xref_cdd", "cd05195", "enoyl_red" ], [ "Q869X2-1", "protein_xref_cdd", "cd08954", "KR_1_FAS_SDR_x" ], [ "Q869X3-1", "protein_xref_cdd", "cd13999", "STKc_MAP3K-like" ], [ "Q869X5-1", "protein_xref_cdd", "cd04301", "NAT_SF" ], [ "Q54U75-1", "protein_xref_cdd", "cd14940", "7tmE_cAMP_R_Slime_mold" ], [ "Q55DK5-1", "protein_xref_cdd", "cd04389", "RhoGAP_KIAA1688" ], [ "Q55DK5-1", "protein_xref_cdd", "cd07610", "FCH_F-BAR" ], [ "Q55DK2-1", "protein_xref_cdd", "cd04301", "NAT_SF" ], [ "Q55DK1-1", "protein_xref_cdd", "cd01310", "TatD_DNAse" ], [ "Q54WK1-1", "protein_xref_cdd", "cd05124", "AFK" ], [ "Q55GK0-1", "protein_xref_cdd", "cd00202", "ZnF_GATA" ], [ "Q55GK3-1", "protein_xref_cdd", "cd00167", "SANT" ], [ "Q55GK2-1", "protein_xref_cdd", "cd18793", "SF2_C_SNF" ], [ "Q55GK2-1", "protein_xref_cdd", "cd18003", "DEXQc_SRCAP" ], [ "Q8T2A6-1", "protein_xref_cdd", "cd18186", "BTB_POZ_ZBTB_KLHL-like" ], [ "Q8T2A6-1", "protein_xref_cdd", "cd14733", "BACK" ], [ "Q54DZ4-1", "protein_xref_cdd", "cd22162", "F-box_AtSKIP3-like" ], [ "Q54DZ0-1", "protein_xref_cdd", "cd11717", "THUMP_THUMPD1_like" ], [ "Q54EX5-1", "protein_xref_cdd", "cd06454", "KBL_like" ], [ "Q54EX8-1", "protein_xref_cdd", "cd17334", "MFS_SLC49" ], [ "Q54RM2-1", "protein_xref_cdd", "cd00009", "AAA" ], [ "Q54RM4-1", "protein_xref_cdd", "cd11377", "Pro-peptidase_S53" ], [ "Q54RM4-1", "protein_xref_cdd", "cd04056", "Peptidases_S53" ], [ "Q86L05-1", "protein_xref_cdd", "cd00403", "Ribosomal_L1" ], [ "Q86L04-1", "protein_xref_cdd", "cd16927", "HATPase_Hsp90-like" ], [ "Q551I6-1", "protein_xref_cdd", "cd01093", "CRIB_PAK_like" ], [ "Q75JX5-1", "protein_xref_cdd", "cd18186", "BTB_POZ_ZBTB_KLHL-like" ], [ "Q75JX0-1", "protein_xref_cdd", "cd01572", "QPRTase" ], [ "Q54G18-1", "protein_xref_cdd", "cd00159", "RhoGAP" ], [ "Q54G10-1", "protein_xref_cdd", "cd00160", "RhoGEF" ], [ "Q553U6-1", "protein_xref_cdd", "cd00012", "NBD_sugar-kinase_HSP70_actin" ], [ "Q553U5-1", "protein_xref_cdd", "cd01321", "ADGF" ], [ "Q86AR0-1", "protein_xref_cdd", "cd17330", "MFS_SLC46_TetA_like" ], [ "Q86AR1-1", "protein_xref_cdd", "cd12257", "RRM1_RBM26_like" ], [ "Q55GT4-1", "protein_xref_cdd", "cd06257", "DnaJ" ], [ "Q55GT9-1", "protein_xref_cdd", "cd17917", "DEXHc_RHA-like" ], [ "Q55GT9-1", "protein_xref_cdd", "cd18791", "SF2_C_RHA" ], [ "Q552Y8-1", "protein_xref_cdd", "cd00136", "PDZ" ], [ "Q55CM2-1", "protein_xref_cdd", "cd00054", "EGF_CA" ], [ "Q55CM6-1", "protein_xref_cdd", "cd16536", "RING-HC_RNF10" ], [ "Q554S6-1", "protein_xref_cdd", "cd00012", "NBD_sugar-kinase_HSP70_actin" ], [ "Q554S4-1", "protein_xref_cdd", "cd20617", "CYP1_2-like" ] ] }, "readme": "Name\n - Dicty UniProtKB Xref CDD\n\nVersion\n - v-2.3.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T05:24:09\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty UniProtKB Xref CDD contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced to CDD database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\",\n \"The Conserved Domain Database is a database of well-annotated multiple sequence alignment models and derived database search models, for ancient domains and full-length proteins\n\nDescription Domain\n Keywords\n - protein domains\n - CDD\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CDD database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_xref_cdd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_cdd.csv\n Name: dicty_protein_xref_cdd.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_cdd.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"3758\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"2017\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"2015\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_protein_xref_cdd.csv" }