{
    "bcoid": "GLY_000861",
    "title": "Dicty UniProtKB Xref Bgee",
    "description": "The Dicty UniProtKB Xref Bgee dataset contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced ...",
    "filename": "dicty_protein_xref_bgee.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Dictyostelium discoideum"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Bgee"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ]
        ]
    },
    "readme": "Name\n   - Dicty UniProtKB Xref Bgee\n\nVersion\n   - v-2.3.1\n\nCreated on\n  - \n\nModified on\n   - 2024-01-09T05:18:17\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Dicty UniProtKB Xref Bgee dataset contains dicty [taxid:44689] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \",\n        \"Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets\n\nDescription Domain\n   Keywords\n   - gene expression\n   - Bgee\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-dictyostelium-discoideum.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n   Output Subdomain\n      Name: dicty_protein_xref_bgee.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_bgee.csv\n      Name: dicty_protein_xref_bgee.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_bgee.stat.csv\n\nFields",
    "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_protein_xref_bgee.csv"
}