{ "bcoid": "GLY_000856", "title": "Dicty Protein Recommended Names (UniProtKB)", "description": "The Dicty Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for dicty ...", "filename": "dicty_protein_recnames.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "Protein Recommended Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54PT1-1...", "Protein GDAP..." ], [ "Q54PT2-1...", "Vacuolar pro..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q54PT1-1", "Protein GDAP2 homolog", "", "" ], [ "Q54PT2-1", "Vacuolar protein sorting-associated protein 4", "", "3.6.4.6" ], [ "Q54PT3-1", "Probable cytochrome P450 556A1", "", "1.14.-.-" ], [ "Q54PT5-1", "THH1/TOM1/TOM3 domain-containing protein", "", "" ], [ "Q54PT6-1", "Electron transfer flavoprotein regulatory factor 1 homolog", "", "" ], [ "Q54PT8-1", "PH domain-containing protein", "", "" ], [ "Q54PT9-1", "Myelin gene regulatory factor-like A", "", "" ], [ "Q54N46-1", "Major facilitator superfamily (MFS) profile domain-containing protein", "", "" ], [ "Q54N47-1", "Branched-chain-amino-acid aminotransferase", "", "2.6.1.42" ], [ "Q54N44-1", "Peter Pan-like protein", "", "" ], [ "Q54N45-1", "Histone chaperone asf1", "", "" ], [ "Q54N40-1", "Putative peroxisome assembly protein 12", "", "" ], [ "Q54N41-1", "Pre-mRNA-splicing factor ISY1 homolog", "", "" ], [ "Q54N48-1", "Protein CLP1 homolog", "", "" ], [ "Q54N49-1", "Inositol-3-phosphate synthase", "", "5.5.1.4" ], [ "Q54QV8-1", "Uncharacterized transmembrane protein DDB_G0283573", "", "" ], [ "Q54QV0-1", "MOB kinase activator-like 2", "", "" ], [ "Q86AV4-1", "Expansin-like protein 5", "Ddexpl5", "" ], [ "Q86AV5-1", "Mitochondrial substrate carrier family protein X", "", "" ], [ "Q86AV6-1", "Citrate synthase", "", "2.3.3.16" ], [ "Q86HC2-1", "Putative uncharacterized protein DDB_G0275685", "", "" ], [ "Q86HC5-1", "F-box domain-containing protein", "", "" ], [ "Q7Z1I0-1", "Calcium up-regulated protein F", "", "" ], [ "Q55BJ9-1", "Superoxide dismutase [Mn], mitochondrial", "", "1.15.1.1" ], [ "Q55BJ3-1", "Asteroid domain-containing protein", "", "" ], [ "Q55BJ2-1", "Exosome complex component RRP45", "", "" ], [ "Q55BJ0-1", "Ankyrin repeat-containing protein", "", "" ], [ "Q55BJ6-1", "Phospholipase B-like protein B", "", "3.1.1.-" ], [ "Q54GS1-1", "Protein CLEC16A homolog", "", "" ], [ "Q54JJ3-1", "ADP-ribosylation factor H", "", "" ], [ "Q54JJ6-1", "Protein HID1", "", "" ], [ "Q54GS8-1", "General transcription factor 3C polypeptide 5", "", "" ], [ "Q54GS9-1", "G-patch domain-containing protein", "", "" ], [ "Q86K96-1", "UspA domain-containing protein", "", "" ], [ "Q86K94-1", "Trafficking protein particle complex subunit 3", "", "" ], [ "Q86K93-1", "Charged multivesicular body protein 7", "", "" ], [ "Q86K91-1", "Uncharacterized protein DDB_G0277209", "", "" ], [ "Q9U3X4-1", "Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial", "", "1.3.5.1" ], [ "Q54KL3-1", "EGF-like domain-containing protein", "", "" ], [ "Q54KL0-1", "Citrate synthase-related protein DDB_G0287281", "", "" ], [ "Q54KL7-1", "Zinc-finger domain-containing protein", "", "" ], [ "Q54KL5-1", "WD repeat-containing protein 5 homolog", "", "" ], [ "Q54KL4-1", "GPI transamidase component gaa1", "", "" ], [ "Q54WP3-1", "Large ribosomal subunit protein uL22m", "", "" ], [ "Q558Y5-1", "Xrn1 N-terminal domain-containing protein", "", "" ], [ "Q54KL9-1", "Putative uncharacterized protein DDB_G0287263", "", "" ], [ "Q54KL8-1", "Putative uncharacterized protein DDB_G0287265", "", "" ], [ "Q54WP6-1", "Leucine-rich repeat-containing protein", "", "" ], [ "Q54T68-1", "FNIP repeat-containing protein", "", "" ], [ "Q54T60-1", "Transmembrane protein 50 homolog", "", "" ], [ "Q54T67-1", "PPPDE domain-containing protein", "", "" ], [ "Q54T65-1", "DH domain-containing protein", "", "" ], [ "Q55E99-1", "Prenyltransferase", "", "" ], [ "Q55E98-1", "Probable zinc transporter protein DDB_G0269332", "", "" ], [ "Q55E95-1", "Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein", "", "" ], [ "Q55E94-1", "Elongation factor G, mitochondrial", "EF-Gmt", "" ], [ "Q55E96-1", "Reverse transcriptase domain-containing protein", "", "" ], [ "Q55E93-1", "Probable basic-leucine zipper transcription factor E", "", "" ], [ "Q54H85-1", "Transmembrane protein", "", "" ], [ "Q54H86-1", "Peroxisomal membrane protein 11 homolog", "", "" ], [ "Q54H80-1", "Phosphatidylethanolamine N-methyltransferase B", "PEAMT", "2.1.1.17" ], [ "Q54H80-1", "Phosphatidylethanolamine N-methyltransferase B", "PEMT", "2.1.1.17" ], [ "Q54H80-1", "Phosphatidylethanolamine N-methyltransferase B", "PEAMT", "2.1.1.71" ], [ "Q54H80-1", "Phosphatidylethanolamine N-methyltransferase B", "PEMT", "2.1.1.71" ], [ "Q54H83-1", "Adhesin domain-containing protein", "", "" ], [ "Q54H88-1", "FNIP repeat-containing protein", "", "" ], [ "Q54H89-1", "B box-type domain-containing protein", "", "" ], [ "P22887-1", "Nucleoside diphosphate kinase, cytosolic", "NDK", "2.7.4.6" ], [ "P22887-1", "Nucleoside diphosphate kinase, cytosolic", "NDP kinase", "2.7.4.6" ], [ "Q86CZ2-1", "Hybrid signal transduction histidine kinase K", "", "2.7.13.3" ], [ "Q869X2-1", "Probable polyketide synthase 17", "dipks17", "2.3.1.-" ], [ "Q869X3-1", "Probable serine/threonine-protein kinase DDB_G0275165", "", "2.7.11.1" ], [ "Q869X7-1", "Histone acetyltransferase type B catalytic subunit DDB_G0275159", "", "2.3.1.48" ], [ "Q869X5-1", "Histone acetyltransferase", "", "2.3.1.48" ], [ "Q54U75-1", "Cyclic AMP receptor-like protein A", "", "" ], [ "Q55DK8-1", "Transmembrane protein", "", "" ], [ "Q55DK9-1", "Transmembrane protein", "", "" ], [ "Q55DK7-1", "Transmembrane protein", "", "" ], [ "Q55DK5-1", "GTPase activating protein homolog 3", "", "" ], [ "Q55DK2-1", "Probable serine/threonine-protein kinase DDB_G0269628", "", "2.7.11.1" ], [ "Q55DK3-1", "Major facilitator superfamily (MFS) profile domain-containing protein", "", "" ], [ "Q54WK8-1", "THH1/TOM1/TOM3 domain-containing protein", "", "" ], [ "Q54WK9-1", "THH1/TOM1/TOM3 domain-containing protein", "", "" ], [ "Q54WK3-1", "WKF domain-containing protein", "", "" ] ] }, "readme": "Name\n - Dicty Protein Recommended Names (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T05:06:31\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for dicty [taxid:44689] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_recnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_recnames.csv\n Name: dicty_protein_recnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_recnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"8038\"\n Name: \"recommended_name_full\"\n Description: \"Recommended full name of the protein in the UniProtKB database\"\n Unique Values: \"5457\"\n Name: \"recommended_name_short\"\n Description: \"Recommended short name of the protein in UniProtKB database\"\n Unique Values: \"667\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"640\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_protein_recnames.csv" }