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"57895", "ChEBI" ], [ "R-DDI-1855200", "R-ALL-2024016", "I(1,4,5)P3 [endoplasmic reticulum lumen]", "output", "C01245", "COMPOUND" ], [ "R-DDI-1855200", "R-ALL-2024016", "I(1,4,5)P3 [endoplasmic reticulum lumen]", "output", "203600", "ChEBI" ], [ "R-DDI-1855200", "R-ALL-2024016", "I(1,4,5)P3 [endoplasmic reticulum lumen]", "output", "000004095598", "ZINC" ], [ "R-DDI-1855207", "R-ALL-2023929", "IP6 [nucleoplasm]", "input", "58130", "ChEBI" ], [ "R-DDI-1855207", "R-ALL-2023929", "IP6 [nucleoplasm]", "input", "000169289809", "ZINC" ], [ "R-DDI-1855207", "R-ALL-2023929", "IP6 [nucleoplasm]", "input", "C01204", "COMPOUND" ], [ "R-DDI-1855207", "R-ALL-2023940", "5-PP-IP5 [nucleoplasm]", "output", "C11526", "COMPOUND" ], [ "R-DDI-1855207", "R-ALL-2023940", "5-PP-IP5 [nucleoplasm]", "output", "58628", "ChEBI" ], [ "R-DDI-1855207", "R-ALL-2023940", "5-PP-IP5 [nucleoplasm]", "output", "000085552707", "ZINC" ], [ "R-DDI-1483004", "R-ALL-264618", "Cho [cytosol]", "input", "000003079337", "ZINC" 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"R-ALL-5694130", "(R)-S-LGSH [cytosol]", "input", "HMDB0001066", "HMDB Metabolite" ], [ "R-DDI-6783221", "R-ALL-5694130", "(R)-S-LGSH [cytosol]", "input", "000003870223", "ZINC" ], [ "R-DDI-6783221", "R-ALL-29708", "LACT [cytosol]", "output", "C00186", "COMPOUND" ] ] }, "readme": "Name\n - Dicty Reaction Participants (Reactome)\n\nVersion\n - v-2.3.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T04:55:11\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - \n\nDescription Domain\n\n Pipeline Steps\n - Step-1: \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: database_accession.tsv\n URI: https:/data.glygen.org/ln2downloads/chebi/2023_10_11/database_accession.tsv\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_participants_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_participants_reactome.csv\n Name: dicty_protein_participants_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_participants_reactome.stat.csv\n\nFields\n Name: \"reaction_id\"\n Description: \"The identifier assigned to a reaction in Reactome database\"\n Unique Values: \"1873\"\n Name: \"participant_id\"\n Description: \"\"\n Unique Values: \"2451\"\n Name: \"participant_name\"\n Description: \"\"\n Unique Values: \"1626\"\n Name: \"role\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"3956\"\n Name: \"xref_type\"\n Description: \"\"\n Unique Values: \"25\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_protein_participants_reactome.csv" }