{
    "bcoid": "GLY_000833",
    "title": "Dicty Protein Citations (Reactome)",
    "description": "The Dicty Protein Reactions (Reactome) dataset contains reactions information for pathways for dicty ...",
    "filename": "dicty_protein_citations_reactome.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Protein"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ]
        ]
    },
    "readme": "Name\n   - Dicty Protein Citations (Reactome)\n\nVersion\n   - v-2.3.1\n\nCreated on\n  - \n\nModified on\n   - 2024-01-09T04:22:35\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Dicty Protein Reactions (Reactome) dataset contains reactions information for pathways for dicty [taxid:44689] UniProtKB accessions that includes reaction participants, pathway ID, reaction ID, PMID etc from Reactome database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - Reactome\n   - Pathway\n   - Reactions\n   - PMID\n\n   Pipeline Steps\n   - Step-1: The script loads the Reactome reaction data from the triplestore containing triples from nt file to retrieve the information associated with the Reactome IDs and maps it to the UniProtKB canonical accessions and extracts the dataset in the csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: dicty_protein_reactions_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_reactions_reactome.csv\n      Name: dicty_protein_xref_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_xref_reactome.csv\n   Output Subdomain\n      Name: dicty_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_citations_reactome.csv\n      Name: dicty_protein_citations_reactome.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_citations_reactome.stat.csv\n\nFields",
    "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_protein_citations_reactome.csv"
}