{ "bcoid": "GLY_000830", "title": "Dicty Protein Alternative Name (UniProtKB)", "description": "The Dicty Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for dicty ...", "filename": "dicty_protein_altnames.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Protein" ], "tag": [ "Protein Alternative Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54PT6-1...", "LYR motif-co..." ], [ "Q54N45-1...", "Anti-silenci..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q54PT6-1", "LYR motif-containing protein 5", "", "" ], [ "Q54N45-1", "Anti-silencing function protein 1 homolog", "", "" ], [ "Q54N40-1", "Peroxin-12", "", "" ], [ "Q54N49-1", "Myo-inositol 1-phosphate synthase", "MI-1-P synthase", "" ], [ "Q54N49-1", "Myo-inositol 1-phosphate synthase", "MIP synthase", "" ], [ "Q54N49-1", "Myo-inositol 1-phosphate synthase", "IPS", "" ], [ "Q54QV0-1", "Mob2 homolog", "", "" ], [ "Q54QV0-1", "Mps one binder kinase activator-like 2", "", "" ], [ "Q54JJ6-1", "HID1 domain-containing protein", "", "" ], [ "Q54JJ6-1", "Protein hid-1 homolog", "", "" ], [ "Q54GS8-1", "Transcription factor IIIC subunit epsilon", "", "" ], [ "Q54GS8-1", "TF3C-epsilon", "", "" ], [ "Q9U3X4-1", "Flavoprotein subunit of complex II", "FP", "" ], [ "Q54WP3-1", "39S ribosomal protein L22, mitochondrial", "L22mt", "" ], [ "Q54WP3-1", "39S ribosomal protein L22, mitochondrial", "MRP-L22", "" ], [ "Q55E94-1", "Elongation factor G 1, mitochondrial", "mEF-G 1", "" ], [ "Q55E94-1", "Elongation factor G1", "", "" ], [ "Q54H86-1", "Peroxin-11", "", "" ], [ "Q54H80-1", "Phospholipid methyltransferase B", "PLMT", "" ], [ "Q86CZ2-1", "Protein sombrero", "", "" ], [ "Q55DK5-1", "Rho GTPase-activating protein gacAA", "", "" ], [ "Q55DK5-1", "GTPase activating factor for raC protein AA", "", "" ], [ "Q54EX5-1", "Long chain base biosynthesis protein 2", "LCB 2", "" ], [ "Q54EX5-1", "Serine-palmitoyl-CoA transferase 2", "SPT2", "" ], [ "Q54EX5-1", "Serine-palmitoyl-CoA transferase 2", "SPT 2", "" ], [ "Q54RM1-1", "OSBPg", "", "" ], [ "Q54RM2-1", "Origin replication complex subunit A", "", "" ], [ "Q86L05-1", "60S ribosomal protein L10a", "", "" ], [ "Q75JX0-1", "Quinolinate phosphoribosyltransferase [decarboxylating]", "QAPRTase", "" ], [ "Q54G18-1", "GTPase activating factor for raC protein W", "", "" ], [ "Q55GT5-1", "Signal sequence receptor subunit gamma", "SSR-gamma", "" ], [ "Q552Y8-1", "26S proteasome regulatory subunit p27", "", "" ], [ "Q554S6-1", "Actin-2-sub 2", "", "" ], [ "Q54XE6-1", "snoRNP protein GAR1", "", "" ], [ "Q54XE6-1", "Nucleolar protein family A member 1", "", "" ], [ "Q54XE8-1", "GTPase activating factor for raC protein P", "", "" ], [ "Q54EG3-1", "40S ribosomal protein S14", "", "" ], [ "Q54EG4-1", "Melibiase", "", "" ], [ "Q54QS3-1", "DEAD box protein 3", "", "" ], [ "Q54VS1-1", "Iron-sulfur assembly protein isca1", "", "" ], [ "Q54VS7-1", "Mitochondrial substrate carrier family protein K", "", "" ], [ "Q54VS7-1", "Solute carrier family 25 member 19 homolog", "", "" ], [ "Q54L75-1", "Loose aggregate E1 protein", "", "" ], [ "Q54L75-1", "Transmembrane, IPT, Ig, E-set, Repeat protein E1", "", "" ], [ "P26200-1", "Profilin II", "", "" ], [ "P0CB66-1", "Putative mediator complex subunit 14", "", "" ], [ "Q9GS21-1", "60S ribosomal protein L28", "", "" ], [ "Q54J97-1", "Chaperonin 60", "CPN60", "" ], [ "Q54J97-1", "Heat shock protein 60", "HSP-60", "" ], [ "Q54J97-1", "Heat shock protein 60", "Hsp60", "" ], [ "Q54J97-1", "60 kDa chaperonin", "", "" ], [ "Q54J98-1", "GTPase activating factor for raC protein X", "", "" ], [ "Q55D12-1", "Histidyl-tRNA synthetase", "HisRS", "" ], [ "Q55D17-1", "80 kDa nuclear cap-binding protein", "CBP80", "" ], [ "Q55D17-1", "80 kDa nuclear cap-binding protein", "NCBP 80 kDa subunit", "" ], [ "Q75JC8-1", "Tubulin-folding cofactor A", "CFA", "" ], [ "P18154-1", "Proteasomal alpha-subunit M3", "", "" ], [ "P07830-1", "Actin-5", "", "" ], [ "P07830-1", "Actin-20", "", "" ], [ "P07830-1", "Actin-13", "", "" ], [ "P07830-1", "Actin-IEL1", "", "" ], [ "P07830-1", "Actin-1", "", "" ], [ "P07830-1", "Actin-9", "", "" ], [ "P07830-1", "Actin-15", "", "" ], [ "P07830-1", "Actin-8", "", "" ], [ "P07830-1", "Actin III", "", "" ], [ "P07830-1", "Actin-21", "", "" ], [ "P07830-1", "Actin-3a", "", "" ], [ "P07830-1", "Actin-6", "", "" ], [ "P07830-1", "Actin M6", "", "" ], [ "P07830-1", "Actin-11", "", "" ], [ "P07830-1", "Actin-12", "", "" ], [ "P07830-1", "Actin-7", "", "" ], [ "P07830-1", "Actin-4", "", "" ], [ "P07830-1", "Actin-2-sub 1", "", "" ], [ "P07830-1", "Actin A1", "", "" ], [ "P07830-1", "Actin A8", "", "" ], [ "P07830-1", "Actin-16", "", "" ], [ "P07830-1", "Actin-14", "", "" ], [ "P07830-1", "Actin A12", "", "" ], [ "P07830-1", "Actin-19", "", "" ], [ "P07830-1", "Actin-2", "", "" ], [ "Q8T154-1", "Uridine monophosphokinase B", "", "" ], [ "Q8T154-1", "Cytidine monophosphokinase B", "", "" ] ] }, "readme": "Name\n - Dicty Protein Alternative Name (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - \n\nModified on\n - 2024-01-09T04:14:30\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dicty Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for dicty [taxid:44689] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_protein_altnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_altnames.csv\n Name: dicty_protein_altnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_protein_altnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1712\"\n Name: \"alternative_name_full\"\n Description: \"Alternative full name of the protein in the UniProtKB database\"\n Unique Values: \"2378\"\n Name: \"alternative_name_short\"\n Description: \"Alternative short name of the protein in UniProtKB database\"\n Unique Values: \"388\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"34\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_protein_altnames.csv" }