{ "bcoid": "GLY_000826", "title": "Dictyostelium Proteoform Phosphorylation Citations (UniProtKB)", "description": "The Dictyostelium Proteoform Phosphorylation Citations (UniProtKB) dataset contains dictyostelium [taxid:44689] ...", "filename": "dicty_proteoform_citations_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Proteoform" ], "tag": [ "Phosphorylation Citations UniProtKB" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P42530-1...", "Structure de..." ], [ "O00910-1...", "Developmenta..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P42530-1", "Structure determination of Discoidin II from Dictyostelium discoideum and carbohydrate binding properties of the lectin domain.", "Proteins", "2008-10", "Arag\u00e3o Karoline Saboia, Satre Michel, Imberty Anne, Varrot Annabelle", "protein_xref_pubmed", "18384150", "protein_xref_uniprotkb", "P42530" ], [ "O00910-1", "Developmentally and spatially regulated activation of a Dictyostelium STAT protein by a serpentine receptor.", "The EMBO journal", "1998-07-15", "Araki T, Gamper M, Early A, Fukuzawa M, Abe T, Kawata T, Kim E, Firtel R A, Williams J G", "protein_xref_pubmed", "9670017", "protein_xref_uniprotkb", "O00910" ], [ "P07830-1", "Stress-induced tyrosine phosphorylation of actin in Dictyostelium cells and localization of the phosphorylation site to tyrosine-53 adjacent to the DNase I binding loop.", "FEBS letters", "1995-11-13", "Jungbluth A, Eckerskorn C, Gerisch G, Lottspeich F, Stocker S, Schweiger A", "protein_xref_pubmed", "7498488", "protein_xref_uniprotkb", "P07830" ], [ "P25323-1", "Myosin light chain kinase A is activated by cGMP-dependent and cGMP-independent pathways.", "FEBS letters", "2006-04-03", "Goldberg Jonathan M, Wolpin Eric S, Bosgraaf Leonard, Clarkson Bryan K, Van Haastert Peter J M, Smith Janet L", "protein_xref_pubmed", "16546177", "protein_xref_uniprotkb", "P25323" ], [ "P16051-1", "Serine 113 is the site of receptor-mediated phosphorylation of the Dictyostelium G protein alpha-subunit G alpha 2.", "The Journal of biological chemistry", "1994-08-19", "Chen M Y, Devreotes P N, Gundersen R E", "protein_xref_pubmed", "8063709", "protein_xref_uniprotkb", "P16051" ], [ "P54644-1", "PIP3-independent activation of TorC2 and PKB at the cell's leading edge mediates chemotaxis.", "Current biology : CB", "2008-07-22", "Kamimura Yoichiro, Xiong Yuan, Iglesias Pablo A, Hoeller Oliver, Bolourani Parvin, Devreotes Peter N", "protein_xref_pubmed", "18635356", "protein_xref_uniprotkb", "P54644" ], [ "P13773-1", "Agonist-induced loss of ligand binding is correlated with phosphorylation of cAR1, a G protein-coupled chemoattractant receptor from Dictyostelium.", "The Journal of biological chemistry", "1995-04-14", "Caterina M J, Devreotes P N, Borleis J, Hereld D", "protein_xref_pubmed", "7721769", "protein_xref_uniprotkb", "P13773" ], [ "P28178-1", "PIP3-independent activation of TorC2 and PKB at the cell's leading edge mediates chemotaxis.", "Current biology : CB", "2008-07-22", "Kamimura Yoichiro, Xiong Yuan, Iglesias Pablo A, Hoeller Oliver, Bolourani Parvin, Devreotes Peter N", "protein_xref_pubmed", "18635356", "protein_xref_uniprotkb", "P28178" ], [ "Q54BD4-1", "Tyrosine phosphorylation-independent nuclear translocation of a dictyostelium STAT in response to DIF signaling.", "Molecular cell", "2001-04", "Fukuzawa M, Araki T, Adrian I, Williams J G", "protein_xref_pubmed", "11336701", "protein_xref_uniprotkb", "Q54BD4" ], [ "Q55GN6-1", "PIP3-independent activation of TorC2 and PKB at the cell's leading edge mediates chemotaxis.", "Current biology : CB", "2008-07-22", "Kamimura Yoichiro, Xiong Yuan, Iglesias Pablo A, Hoeller Oliver, Bolourani Parvin, Devreotes Peter N", "protein_xref_pubmed", "18635356", "protein_xref_uniprotkb", "Q55GN6" ] ] }, "readme": "Name\n - Dictyostelium Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Dictyostelium Proteoform Phosphorylation Citations (UniProtKB) dataset contains dictyostelium [taxid:44689] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n - Phosphorylation\n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: dicty_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_proteoform_phosphorylation_sites_uniprotkb.csv\n Output Subdomain\n Name: dicty_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n Name: dicty_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"10\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"8\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"6\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"8\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"8\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"8\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"10\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_proteoform_citations_phosphorylation_sites_uniprotkb.csv" }