{
    "bcoid": "GLY_000824",
    "title": "Dictyostelium Glycation Sites (UniProtKB)",
    "description": "The Dictyostelium Glycation Sites (UniProtKB) dataset contains dictyostelium [taxid:44689] UniProtKB ...",
    "filename": "dicty_proteoform_glycation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Dictyostelium discoideum"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycation Sites (UniProtKB)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [],
        "headers": [
            "uniprotkb_ca...",
            "glycation_si..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_glycation_annotation_comment"
                },
                {
                    "type": "string",
                    "label": "data_source"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "carb_name"
                }
            ]
        ]
    },
    "readme": "Name\n   - Dictyostelium Glycation Sites (UniProtKB)\n\nVersion\n   - v-2.3.1\n\nCreated on\n  - \n\nModified on\n   - 2024-01-03T18:51:31\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Dictyostelium Glycation Sites (UniProtKB) dataset contains dictyostelium [taxid:44689] UniProtKB canonical accessions with information on glycation sites with evidence in UniProtKB database. The dataset is derived from the UniProtKB Dictyostelium discoideum proteome release.\n\nDescription Domain\n   Keywords\n   - glycation sites\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the glycation information from the triplestore conatining triples from the nt file and extracts as a csv dataset.\n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-dictyostelium-discoideum.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n   Output Subdomain\n      Name: dicty_proteoform_glycation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_proteoform_glycation_sites_uniprotkb.csv\n      Name: dicty_proteoform_glycation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_proteoform_glycation_sites_uniprotkb.stat.csv\n\nFields",
    "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_proteoform_glycation_sites_uniprotkb.csv"
}