{ "bcoid": "GLY_000823", "title": "Dictyostelium Phosphorylation Sites (UniProtKB)", "description": "The Dictyostelium Phosphorylation Sites (UniProtKB) dataset contains dictyostelium [taxid:44689] UniProtKB ...", "filename": "dicty_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Dictyostelium discoideum" ], "molecule": [ "Proteoform" ], "tag": [ "Phosphorylation Sites" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q54U87-1...", "1396..." ], [ "Q9GPM4-1...", "199..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "Q54U87-1", "1396", "His", "", "", "protein_xref_uniprotkb", "Q54U87", "protein_xref_uniprotkb", "Q54U87", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "Q9GPM4-1", "199", "Tyr", "", "", "protein_xref_uniprotkb", "Q9GPM4", "protein_xref_uniprotkb", "Q9GPM4", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "P13773-1", "366", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "P51136-1", "220", "Tyr", "", "", "protein_xref_uniprotkb", "P51136", "protein_xref_uniprotkb", "P51136", "Phosphotyrosine", "Phosphotyrosine; by zakA", "" ], [ "P13773-1", "360", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "P42530-1", "84", "His", "", "", "protein_xref_uniprotkb", "P42530", "protein_xref_uniprotkb", "P42530", "Phosphohistidine", "Phosphohistidine", "ECO_0000305" ], [ "P42530-1", "84", "His", "", "", "protein_xref_pubmed", "18384150", "protein_xref_uniprotkb", "P42530", "Phosphohistidine", "Phosphohistidine", "ECO_0000305" ], [ "O15819-1", "11", "Ser", "", "", "protein_xref_uniprotkb", "O15819", "protein_xref_uniprotkb", "O15819", "Phosphoserine", "Phosphoserine", "" ], [ "P13773-1", "361", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "P51136-1", "214", "Tyr", "", "", "protein_xref_uniprotkb", "P51136", "protein_xref_uniprotkb", "P51136", "Phosphotyrosine", "Phosphotyrosine; by zakA", "" ], [ "Q54QB1-1", "176", "Thr", "", "", "protein_xref_uniprotkb", "Q54QB1", "protein_xref_uniprotkb", "Q54QB1", "Phosphothreonine", "Phosphothreonine", "" ], [ "P34100-1", "488", "Thr", "", "", "protein_xref_uniprotkb", "P34100", "protein_xref_uniprotkb", "P34100", "Phosphothreonine", "Phosphothreonine", "" ], [ "P08799-1", "2029", "Thr", "", "", "protein_xref_uniprotkb", "P08799", "protein_xref_uniprotkb", "P08799", "Phosphothreonine", "Phosphothreonine; by MHCK", "" ], [ "Q551H4-1", "230", "Thr", "", "", "protein_xref_uniprotkb", "Q551H4", "protein_xref_uniprotkb", "Q551H4", "Phosphothreonine", "Phosphothreonine; by autocatalysis", "" ], [ "Q54YZ9-1", "1356", "His", "", "", "protein_xref_uniprotkb", "Q54YZ9", "protein_xref_uniprotkb", "Q54YZ9", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "Q9GPM4-1", "206", "Ser", "", "", "protein_xref_uniprotkb", "Q9GPM4", "protein_xref_uniprotkb", "Q9GPM4", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O00910-1", "702", "Tyr", "", "", "protein_xref_uniprotkb", "O00910", "protein_xref_uniprotkb", "O00910", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "O00910-1", "702", "Tyr", "", "", "protein_xref_pubmed", "9670017", "protein_xref_uniprotkb", "O00910", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "P07830-1", "54", "Tyr", "", "", "protein_xref_uniprotkb", "P07830", "protein_xref_uniprotkb", "P07830", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "P07830-1", "54", "Tyr", "", "", "protein_xref_pubmed", "7498488", "protein_xref_uniprotkb", "P07830", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000269" ], [ "Q54UC0-1", "2789", "Ser", "", "", "protein_xref_uniprotkb", "Q54UC0", "protein_xref_uniprotkb", "Q54UC0", "Phosphoserine", "Phosphoserine; by autocatalysis", "" ], [ "P28178-1", "309", "Thr", "", "", "protein_xref_uniprotkb", "P28178", "protein_xref_uniprotkb", "P28178", "Phosphothreonine", "Phosphothreonine; by autocatalysis", "" ], [ "P34112-1", "162", "Thr", "", "", "protein_xref_uniprotkb", "P34112", "protein_xref_uniprotkb", "P34112", "Phosphothreonine", "Phosphothreonine; by CAK", "" ], [ "P25323-1", "289", "Thr", "", "", "protein_xref_uniprotkb", "P25323", "protein_xref_uniprotkb", "P25323", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P25323-1", "289", "Thr", "", "", "protein_xref_pubmed", "16546177", "protein_xref_uniprotkb", "P25323", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q86AT9-1", "559", "His", "", "", "protein_xref_uniprotkb", "Q86AT9", "protein_xref_uniprotkb", "Q86AT9", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "P13773-1", "364", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "P34112-1", "20", "Thr", "", "", "protein_xref_uniprotkb", "P34112", "protein_xref_uniprotkb", "P34112", "Phosphothreonine", "Phosphothreonine", "" ], [ "P35352-1", "204", "Ser", "", "", "protein_xref_uniprotkb", "P35352", "protein_xref_uniprotkb", "P35352", "Phosphoserine", "Phosphoserine; by PKA", "" ], [ "Q54XY4-1", "359", "Ser", "", "", "protein_xref_uniprotkb", "Q54XY4", "protein_xref_uniprotkb", "Q54XY4", "Phosphoserine", "Phosphoserine; by PKB", "" ], [ "P08799-1", "1833", "Thr", "", "", "protein_xref_uniprotkb", "P08799", "protein_xref_uniprotkb", "P08799", "Phosphothreonine", "Phosphothreonine; by MHCK", "" ], [ "P34907-1", "298", "Ser", "", "", "protein_xref_uniprotkb", "P34907", "protein_xref_uniprotkb", "P34907", "Phosphoserine", "Phosphoserine", "" ], [ "P34101-1", "377", "Thr", "", "", "protein_xref_uniprotkb", "P34101", "protein_xref_uniprotkb", "P34101", "Phosphothreonine", "Phosphothreonine; by autocatalysis", "" ], [ "Q54QB1-1", "178", "Tyr", "", "", "protein_xref_uniprotkb", "Q54QB1", "protein_xref_uniprotkb", "Q54QB1", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "Q54W36-1", "501", "His", "", "", "protein_xref_uniprotkb", "Q54W36", "protein_xref_uniprotkb", "Q54W36", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "P16051-1", "113", "Ser", "", "", "protein_xref_uniprotkb", "P16051", "protein_xref_uniprotkb", "P16051", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P16051-1", "113", "Ser", "", "", "protein_xref_pubmed", "8063709", "protein_xref_uniprotkb", "P16051", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q869N2-1", "8", "Ser", "", "", "protein_xref_uniprotkb", "Q869N2", "protein_xref_uniprotkb", "Q869N2", "Phosphoserine", "Phosphoserine; by autocatalysis", "" ], [ "Q54RR8-1", "65", "His", "", "", "protein_xref_uniprotkb", "Q54RR8", "protein_xref_uniprotkb", "Q54RR8", "Phosphohistidine", "Phosphohistidine", "ECO_0000255" ], [ "Q54UC0-1", "2822", "Thr", "", "", "protein_xref_uniprotkb", "Q54UC0", "protein_xref_uniprotkb", "Q54UC0", "Phosphothreonine", "Phosphothreonine; by autocatalysis", "" ], [ "P13773-1", "363", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "Q55G10-1", "259", "His", "", "", "protein_xref_uniprotkb", "Q55G10", "protein_xref_uniprotkb", "Q55G10", "Phosphohistidine", "Phosphohistidine", "ECO_0000250" ], [ "P13773-1", "308", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "Q552E2-1", "1249", "Ser", "", "", "protein_xref_uniprotkb", "Q552E2", "protein_xref_uniprotkb", "Q552E2", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P34112-1", "21", "Tyr", "", "", "protein_xref_uniprotkb", "P34112", "protein_xref_uniprotkb", "P34112", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "P54644-1", "278", "Thr", "", "", "protein_xref_uniprotkb", "P54644", "protein_xref_uniprotkb", "P54644", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P54644-1", "278", "Thr", "", "", "protein_xref_pubmed", "18635356", "protein_xref_uniprotkb", "P54644", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q00766-1", "27", "Ser", "", "", "protein_xref_uniprotkb", "Q00766", "protein_xref_uniprotkb", "Q00766", "Phosphoserine", "Phosphoserine", "" ], [ "P34117-1", "14", "Thr", "", "", "protein_xref_uniprotkb", "P34117", "protein_xref_uniprotkb", "P34117", "Phosphothreonine", "Phosphothreonine", "" ], [ "Q54YH4-1", "970", "His", "", "", "protein_xref_uniprotkb", "Q54YH4", "protein_xref_uniprotkb", "Q54YH4", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "Q54UC0-1", "2814", "Thr", "", "", "protein_xref_uniprotkb", "Q54UC0", "protein_xref_uniprotkb", "Q54UC0", "Phosphothreonine", "Phosphothreonine; by autocatalysis", "" ], [ "P13773-1", "304", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P13773-1", "304", "Ser", "", "", "protein_xref_pubmed", "7721769", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P05987-1", "32", "Ser", "", "", "protein_xref_uniprotkb", "P05987", "protein_xref_uniprotkb", "P05987", "Phosphoserine", "Phosphoserine", "" ], [ "P34907-1", "192", "Ser", "", "", "protein_xref_uniprotkb", "P34907", "protein_xref_uniprotkb", "P34907", "Phosphoserine", "Phosphoserine", "" ], [ "Q02158-1", "524", "Ser", "", "", "protein_xref_uniprotkb", "Q02158", "protein_xref_uniprotkb", "Q02158", "Phosphoserine", "Phosphoserine", "" ], [ "O61125-1", "173", "Thr", "", "", "protein_xref_uniprotkb", "O61125", "protein_xref_uniprotkb", "O61125", "Phosphothreonine", "Phosphothreonine; by autocatalysis", "" ], [ "P13773-1", "368", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "Q54RP6-1", "840", "His", "", "", "protein_xref_uniprotkb", "Q54RP6", "protein_xref_uniprotkb", "Q54RP6", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "P54685-1", "163", "Ser", "", "", "protein_xref_uniprotkb", "P54685", "protein_xref_uniprotkb", "P54685", "Phosphoserine", "Phosphoserine", "" ], [ "Q552E2-1", "535", "Thr", "", "", "protein_xref_uniprotkb", "Q552E2", "protein_xref_uniprotkb", "Q552E2", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "Q54Q69-1", "2494", "His", "", "", "protein_xref_uniprotkb", "Q54Q69", "protein_xref_uniprotkb", "Q54Q69", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "P13773-1", "367", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "P34099-1", "490", "Thr", "", "", "protein_xref_uniprotkb", "P34099", "protein_xref_uniprotkb", "P34099", "Phosphothreonine", "Phosphothreonine", "" ], [ "P34102-1", "664", "Thr", "", "", "protein_xref_uniprotkb", "P34102", "protein_xref_uniprotkb", "P34102", "Phosphothreonine", "Phosphothreonine; by autocatalysis", "" ], [ "Q9GPM4-1", "393", "Ser", "", "", "protein_xref_uniprotkb", "Q9GPM4", "protein_xref_uniprotkb", "Q9GPM4", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q55D99-1", "585", "Thr", "", "", "protein_xref_uniprotkb", "Q55D99", "protein_xref_uniprotkb", "Q55D99", "Phosphothreonine", "Phosphothreonine; by PKB", "" ], [ "P13773-1", "362", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "P13833-1", "14", "Ser", "", "", "protein_xref_uniprotkb", "P13833", "protein_xref_uniprotkb", "P13833", "Phosphoserine", "Phosphoserine", "" ], [ "Q95PI2-1", "429", "His", "", "", "protein_xref_uniprotkb", "Q95PI2", "protein_xref_uniprotkb", "Q95PI2", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "P13773-1", "302", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "P13773-1", "302", "Ser", "", "", "protein_xref_pubmed", "7721769", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "ECO_0000269" ], [ "Q54SP4-1", "221", "His", "", "", "protein_xref_uniprotkb", "Q54SP4", "protein_xref_uniprotkb", "Q54SP4", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "Q551X9-1", "327", "His", "", "", "protein_xref_uniprotkb", "Q551X9", "protein_xref_uniprotkb", "Q551X9", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "P25323-1", "166", "Thr", "", "", "protein_xref_uniprotkb", "P25323", "protein_xref_uniprotkb", "P25323", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P25323-1", "166", "Thr", "", "", "protein_xref_pubmed", "16546177", "protein_xref_uniprotkb", "P25323", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P13773-1", "299", "Ser", "", "", "protein_xref_uniprotkb", "P13773", "protein_xref_uniprotkb", "P13773", "Phosphoserine", "Phosphoserine", "" ], [ "Q54XL6-1", "256", "Thr", "", "", "protein_xref_uniprotkb", "Q54XL6", "protein_xref_uniprotkb", "Q54XL6", "Phosphothreonine", "Phosphothreonine; by autocatalysis", "" ], [ "P34092-1", "332", "Ser", "", "", "protein_xref_uniprotkb", "P34092", "protein_xref_uniprotkb", "P34092", "Phosphoserine", "Phosphoserine", "" ], [ "Q54SP4-1", "750", "His", "", "", "protein_xref_uniprotkb", "Q54SP4", "protein_xref_uniprotkb", "Q54SP4", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "Q86CZ2-1", "825", "His", "", "", "protein_xref_uniprotkb", "Q86CZ2", "protein_xref_uniprotkb", "Q86CZ2", "Phosphohistidine", "Phosphohistidine; by autocatalysis", "" ], [ "P28178-1", "470", "Thr", "", "", "protein_xref_uniprotkb", "P28178", "protein_xref_uniprotkb", "P28178", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P28178-1", "470", "Thr", "", "", "protein_xref_pubmed", "18635356", "protein_xref_uniprotkb", "P28178", "Phosphothreonine", "Phosphothreonine", "ECO_0000269" ], [ "P34907-1", "303", "Ser", "", "", "protein_xref_uniprotkb", "P34907", "protein_xref_uniprotkb", "P34907", "Phosphoserine", "Phosphoserine", "" ] ] }, "readme": "Name\n - Dictyostelium Phosphorylation Sites (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - \n\nModified on\n - 2024-01-03T18:44:26\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Dictyostelium Phosphorylation Sites (UniProtKB) dataset contains dictyostelium [taxid:44689] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from the UniProtKB Dictyostelium discoideum proteome release.\n\nDescription Domain\n Keywords\n - phosphoryation sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-dictyostelium-discoideum.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-dictyostelium-discoideum.nt\n Output Subdomain\n Name: dicty_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: dicty_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/dicty_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"57\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"86\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"4\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"1\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"65\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"57\"\n Name: \"phosphorylated_residue\"\n Description: \"The amino acid that is modified by phosphorylation\"\n Unique Values: \"4\"\n Name: \"phosphorylation_annotation\"\n Description: \"The phosphorylation annotation in UniProtKB that provides more context and description of a phosphorylation event on a protein.\"\n Unique Values: \"14\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"5\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/dicty_proteoform_phosphorylation_sites_uniprotkb.csv" }