{
    "bcoid": "GLY_000816",
    "title": "SARS-CoV2 UniProtKB Xref ViralGlycome",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) UniProtKB Xref ViralGlycome contains sarscov2 [taxid:2697049] ...",
    "filename": "sarscov2_protein_xref_viralglycome.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome coronavirus 2"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "ViralGlycome cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DTC7-1...",
                "protein_xref..."
            ],
            [
                "P0DTC6-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P0DTC7-1",
                "protein_xref_viralglycome",
                "P0DTC7",
                "7a"
            ],
            [
                "P0DTC6-1",
                "protein_xref_viralglycome",
                "P0DTC6",
                "6"
            ],
            [
                "P0DTC5-1",
                "protein_xref_viralglycome",
                "P0DTC5",
                "M"
            ],
            [
                "P0DTC4-1",
                "protein_xref_viralglycome",
                "P0DTC4",
                "E"
            ],
            [
                "P0DTC3-1",
                "protein_xref_viralglycome",
                "P0DTC3",
                "3a"
            ],
            [
                "P0DTC2-1",
                "protein_xref_viralglycome",
                "P0DTC2",
                "S"
            ],
            [
                "P0DTC1-1",
                "protein_xref_viralglycome",
                "P0DTC1",
                ""
            ],
            [
                "P0DTG1-1",
                "protein_xref_viralglycome",
                "P0DTG1",
                ""
            ],
            [
                "P0DTG0-1",
                "protein_xref_viralglycome",
                "P0DTG0",
                ""
            ],
            [
                "P0DTC9-1",
                "protein_xref_viralglycome",
                "P0DTC9",
                "N"
            ],
            [
                "P0DTC8-1",
                "protein_xref_viralglycome",
                "P0DTC8",
                "8"
            ],
            [
                "P0DTD2-1",
                "protein_xref_viralglycome",
                "P0DTD2",
                "9b"
            ],
            [
                "P0DTD3-1",
                "protein_xref_viralglycome",
                "P0DTD3",
                "9c"
            ],
            [
                "P0DTD1-1",
                "protein_xref_viralglycome",
                "P0DTD1",
                "rep"
            ],
            [
                "P0DTD8-1",
                "protein_xref_viralglycome",
                "P0DTD8",
                "7b"
            ],
            [
                "P0DTF1-1",
                "protein_xref_viralglycome",
                "P0DTF1",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 UniProtKB Xref ViralGlycome\n\nVersion\n   - v-2.3.1\n\nCreated on\n  - \n\nModified on\n   - 2023-09-11T22:49:03\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) UniProtKB Xref ViralGlycome contains sarscov2 [taxid:2697049] UniProtKB canonical accessions cross-referenced to ViralGlycome database - https://viral.glycomics.ku.dk.\n   - The ViralGlycome creates visualization of CCG-generated viral O-glycoproteomics datasets and put them in the context of other types of glycosylation, evolutionary conservation, and immune reactivity.\n\nDescription Domain\n   Keywords\n   - ViralGlycome\n   - viral glycosylation viewer\n   - cross-reference\n   - viral O-glycoproteomics datasets\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to ViralGlycome database accessions/identifiers and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_protein_xref_viralglycome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/compiled/sarscov2_protein_xref_viralglycome.csv\n   Output Subdomain\n      Name: sarscov2_protein_xref_viralglycome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_protein_xref_viralglycome.csv\n      Name: sarscov2_protein_xref_viralglycome.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_protein_xref_viralglycome.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"16\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"16\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"13\"",
    "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/sarscov2_protein_xref_viralglycome.csv"
}