{ "bcoid": "GLY_000804", "title": "Yeast Proteoform Phosphorylation Citations (UniProtKB)", "description": "", "filename": "yeast_proteoform_citations_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Phosphorylation Citations UniProtKB" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P11986-1...", "Phosphorylat..." ], [ "P36010-1...", "A multidimen..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P11986-1", "Phosphorylation regulates myo-inositol-3-phosphate synthase: a novel regulatory mechanism of inositol biosynthesis.", "The Journal of biological chemistry", "2013 Sep 13", "Deranieh RM, He Q, Caruso JA, Greenberg ML", "protein_xref_pubmed", "23902760", "protein_xref_uniprotkb", "P11986" ], [ "P36010-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P36010" ], [ "P37012-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P37012" ], [ "P37012-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P37012" ], [ "P14540-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P14540" ], [ "Q03262-1", "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.", "Molecular & cellular proteomics : MCP", "2005-03", "Gruhler Albrecht, Olsen Jesper V, Mohammed Shabaz, Mortensen Peter, Faergeman Nils J, Mann Matthias, Jensen Ole N", "protein_xref_pubmed", "15665377", "protein_xref_uniprotkb", "Q03262" ], [ "P40495-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P40495" ], [ "P04807-1", "Autophosphorylation-inactivation site of hexokinase 2 in Saccharomyces cerevisiae.", "Biochemistry", "1997-02-25", "Heidrich K, Otto A, Behlke J, Rush J, Wenzel K W, Kriegel T", "protein_xref_pubmed", "9047292", "protein_xref_uniprotkb", "P04807" ], [ "P04807-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P04807" ], [ "P33401-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P33401" ], [ "P33401-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P33401" ], [ "P33401-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P33401" ], [ "P04076-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P04076" ], [ "P00812-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P00812" ], [ "Q01519-1", "Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP synthase.", "Molecular & cellular proteomics : MCP", "2007-11", "Reinders J\u00f6rg, Wagner Karina, Zahedi Rene P, Stojanovski Diana, Eyrich Beate, van der Laan Martin, Rehling Peter, Sickmann Albert, Pfanner Nikolaus, Meisinger Chris", "protein_xref_pubmed", "17761666", "protein_xref_uniprotkb", "Q01519" ], [ "P25297-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P25297" ], [ "P07248-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P07248" ], [ "P27637-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P27637" ], [ "P48570-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P48570" ], [ "Q05580-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q05580" ], [ "Q05580-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "Q05580" ], [ "Q03558-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q03558" ], [ "Q05050-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q05050" ], [ "P43638-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P43638" ], [ "P40096-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P40096" ], [ "Q12443-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q12443" ], [ "Q08967-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q08967" ], [ "P53261-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P53261" ], [ "P40059-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P40059" ], [ "P54786-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P54786" ], [ "Q06324-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q06324" ], [ "P25588-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P25588" ], [ "P15891-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P15891" ], [ "P37296-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P37296" ], [ "P26570-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P26570" ], [ "P39935-1", "Discovery of Arginine Methylation, Phosphorylation, and Their Co-occurrence in Condensate-Associated Proteins in Saccharomyces cerevisiae.", "Journal of proteome research", "2021-05-07", "Hamey Joshua J, Nguyen Amy, Wilkins Marc R", "protein_xref_pubmed", "33856219", "protein_xref_uniprotkb", "P39935" ], [ "P38329-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P38329" ], [ "P14180-1", "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-02-13", "Chi An, Huttenhower Curtis, Geer Lewis Y, Coon Joshua J, Syka John E P, Bai Dina L, Shabanowitz Jeffrey, Burke Daniel J, Troyanskaya Olga G, Hunt Donald F", "protein_xref_pubmed", "17287358", "protein_xref_uniprotkb", "P14180" ], [ "P43587-1", "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.", "Molecular & cellular proteomics : MCP", "2005-03", "Gruhler Albrecht, Olsen Jesper V, Mohammed Shabaz, Mortensen Peter, Faergeman Nils J, Mann Matthias, Jensen Ole N", "protein_xref_pubmed", "15665377", "protein_xref_uniprotkb", "P43587" ], [ "P48361-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P48361" ], [ "P46367-1", "Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP synthase.", "Molecular & cellular proteomics : MCP", "2007-11", "Reinders J\u00f6rg, Wagner Karina, Zahedi Rene P, Stojanovski Diana, Eyrich Beate, van der Laan Martin, Rehling Peter, Sickmann Albert, Pfanner Nikolaus, Meisinger Chris", "protein_xref_pubmed", "17761666", "protein_xref_uniprotkb", "P46367" ], [ "P36049-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P36049" ], [ "P36049-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P36049" ], [ "P05453-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P05453" ], [ "Q12421-1", "Phosphorylation of Atg31 is required for autophagy.", "Protein & cell", "2015-04", "Feng Wenzhi, Wu Tong, Dan Xiaoyu, Chen Yuling, Li Lin, Chen She, Miao Di, Deng Haiteng, Gong Xinqi, Yu Li", "protein_xref_pubmed", "25773276", "protein_xref_uniprotkb", "Q12421" ], [ "P31111-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P31111" ], [ "P53277-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P53277" ], [ "P53277-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P53277" ], [ "P53277-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P53277" ], [ "Q12518-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "Q12518" ], [ "P24814-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P24814" ], [ "P25694-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P25694" ], [ "P25694-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P25694" ], [ "P53859-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P53859" ], [ "P53859-1", "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-02-13", "Chi An, Huttenhower Curtis, Geer Lewis Y, Coon Joshua J, Syka John E P, Bai Dina L, Shabanowitz Jeffrey, Burke Daniel J, Troyanskaya Olga G, Hunt Donald F", "protein_xref_pubmed", "17287358", "protein_xref_uniprotkb", "P53859" ], [ "P53865-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P53865" ], [ "P53890-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P53890" ], [ "P53890-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P53890" ], [ "P32457-1", "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.", "Molecular & cellular proteomics : MCP", "2005-03", "Gruhler Albrecht, Olsen Jesper V, Mohammed Shabaz, Mortensen Peter, Faergeman Nils J, Mann Matthias, Jensen Ole N", "protein_xref_pubmed", "15665377", "protein_xref_uniprotkb", "P32457" ], [ "P08456-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P08456" ], [ "P08456-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P08456" ], [ "P08456-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P08456" ], [ "P53923-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P53923" ], [ "Q12123-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q12123" ], [ "Q05785-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q05785" ], [ "Q12514-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q12514" ], [ "Q12514-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "Q12514" ], [ "P01120-1", "Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.", "Proceedings of the National Academy of Sciences of the United States of America", "2007-02-13", "Chi An, Huttenhower Curtis, Geer Lewis Y, Coon Joshua J, Syka John E P, Bai Dina L, Shabanowitz Jeffrey, Burke Daniel J, Troyanskaya Olga G, Hunt Donald F", "protein_xref_pubmed", "17287358", "protein_xref_uniprotkb", "P01120" ], [ "P38994-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P38994" ], [ "P39524-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P39524" ], [ "P39524-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P39524" ], [ "Q02455-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q02455" ], [ "Q06631-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q06631" ], [ "Q06631-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q06631" ], [ "P36126-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P36126" ], [ "P36126-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P36126" ], [ "P38219-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P38219" ], [ "P22216-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P22216" ], [ "P40150-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "P40150" ], [ "P40150-1", "Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.", "Molecular & cellular proteomics : MCP", "2005-03", "Gruhler Albrecht, Olsen Jesper V, Mohammed Shabaz, Mortensen Peter, Faergeman Nils J, Mann Matthias, Jensen Ole N", "protein_xref_pubmed", "15665377", "protein_xref_uniprotkb", "P40150" ], [ "P38628-1", "Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.", "Journal of proteome research", "2007-03", "Li Xue, Gerber Scott A, Rudner Adam D, Beausoleil Sean A, Haas Wilhelm, Vill\u00e9n Judit, Elias Joshua E, Gygi Steve P", "protein_xref_pubmed", "17330950", "protein_xref_uniprotkb", "P38628" ], [ "P38968-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "P38968" ], [ "Q12136-1", "A multidimensional chromatography technology for in-depth phosphoproteome analysis.", "Molecular & cellular proteomics : MCP", "2008-07", "Albuquerque Claudio P, Smolka Marcus B, Payne Samuel H, Bafna Vineet, Eng Jimmy, Zhou Huilin", "protein_xref_pubmed", "18407956", "protein_xref_uniprotkb", "Q12136" ], [ "Q12136-1", "Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution.", "Science (New York, N.Y.)", "2009-09-25", "Holt Liam J, Tuch Brian B, Vill\u00e9n Judit, Johnson Alexander D, Gygi Steven P, Morgan David O", "protein_xref_pubmed", "19779198", "protein_xref_uniprotkb", "Q12136" ] ] }, "readme": "Name\n - Yeast Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-09-02T13:32:35.505543\n\nModified on\n - 2023-09-11T20:41:40\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n - Phosphorylation\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: yeast_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_proteoform_phosphorylation_sites_uniprotkb.csv\n Output Subdomain\n Name: yeast_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n Name: yeast_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1937\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"74\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"35\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"73\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"74\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"74\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1937\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/yeast_proteoform_citations_phosphorylation_sites_uniprotkb.csv" }