{ "bcoid": "GLY_000787", "title": "Yeast UniProtKB Xref O-GlcNAcAtlas", "description": "The Yeast UniProtKB Xref O-GlcNAcAtlas dataset contains yeast [taxid:559292] UniProtKB canonical accessions ...", "filename": "yeast_protein_xref_oglcnac_atlas.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "O-GlcNAcAtlas cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P39971-1...", "protein_xref..." ], [ "Q06568-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P39971-1", "protein_xref_oglcnac_atlas", "P39971", "O-GlcNAc Atlas" ], [ "Q06568-1", "protein_xref_oglcnac_atlas", "Q06568", "O-GlcNAc Atlas" ], [ "P18494-1", "protein_xref_oglcnac_atlas", "P18494", "O-GlcNAc Atlas" ], [ "Q03441-1", "protein_xref_oglcnac_atlas", "Q03441", "O-GlcNAc Atlas" ], [ "P32913-1", "protein_xref_oglcnac_atlas", "P32913", "O-GlcNAc Atlas" ], [ "Q08560-1", "protein_xref_oglcnac_atlas", "Q08560", "O-GlcNAc Atlas" ], [ "P50896-1", "protein_xref_oglcnac_atlas", "P50896", "O-GlcNAc Atlas" ], [ "Q02875-1", "protein_xref_oglcnac_atlas", "Q02875", "O-GlcNAc Atlas" ], [ "P38968-1", "protein_xref_oglcnac_atlas", "P38968", "O-GlcNAc Atlas" ], [ "P48559-1", "protein_xref_oglcnac_atlas", "P48559", "O-GlcNAc Atlas" ], [ "Q06604-1", "protein_xref_oglcnac_atlas", "Q06604", "O-GlcNAc Atlas" ], [ "P08468-1", "protein_xref_oglcnac_atlas", "P08468", "O-GlcNAc Atlas" ], [ "Q12515-1", "protein_xref_oglcnac_atlas", "Q12515", "O-GlcNAc Atlas" ], [ "Q12516-1", "protein_xref_oglcnac_atlas", "Q12516", "O-GlcNAc Atlas" ], [ "P39705-1", "protein_xref_oglcnac_atlas", "P39705", "O-GlcNAc Atlas" ], [ "P39707-1", "protein_xref_oglcnac_atlas", "P39707", "O-GlcNAc Atlas" ], [ "P20134-1", "protein_xref_oglcnac_atlas", "P20134", "O-GlcNAc Atlas" ], [ "Q99216-1", "protein_xref_oglcnac_atlas", "Q99216", "O-GlcNAc Atlas" ], [ "P11433-1", "protein_xref_oglcnac_atlas", "P11433", "O-GlcNAc Atlas" ], [ "P36139-1", "protein_xref_oglcnac_atlas", "P36139", "O-GlcNAc Atlas" ], [ "P25357-1", "protein_xref_oglcnac_atlas", "P25357", "O-GlcNAc Atlas" ], [ "P20485-1", "protein_xref_oglcnac_atlas", "P20485", "O-GlcNAc Atlas" ], [ "P38809-1", "protein_xref_oglcnac_atlas", "P38809", "O-GlcNAc Atlas" ], [ "P40850-1", "protein_xref_oglcnac_atlas", "P40850", "O-GlcNAc Atlas" ], [ "P12754-1", "protein_xref_oglcnac_atlas", "P12754", "O-GlcNAc Atlas" ], [ "Q08484-1", "protein_xref_oglcnac_atlas", "Q08484", "O-GlcNAc Atlas" ], [ "P38236-1", "protein_xref_oglcnac_atlas", "P38236", "O-GlcNAc Atlas" ], [ "P28743-1", "protein_xref_oglcnac_atlas", "P28743", "O-GlcNAc Atlas" ], [ "P52919-1", "protein_xref_oglcnac_atlas", "P52919", "O-GlcNAc Atlas" ], [ "P28817-1", "protein_xref_oglcnac_atlas", "P28817", "O-GlcNAc Atlas" ], [ "Q12372-1", "protein_xref_oglcnac_atlas", "Q12372", "O-GlcNAc Atlas" ], [ "P25332-1", "protein_xref_oglcnac_atlas", "P25332", "O-GlcNAc Atlas" ], [ "P25339-1", "protein_xref_oglcnac_atlas", "P25339", "O-GlcNAc Atlas" ], [ "P50875-1", "protein_xref_oglcnac_atlas", "P50875", "O-GlcNAc Atlas" ], [ "P40463-1", "protein_xref_oglcnac_atlas", "P40463", "O-GlcNAc Atlas" ], [ "Q03373-1", "protein_xref_oglcnac_atlas", "Q03373", "O-GlcNAc Atlas" ], [ "P47116-1", "protein_xref_oglcnac_atlas", "P47116", "O-GlcNAc Atlas" ], [ "P47112-1", "protein_xref_oglcnac_atlas", "P47112", "O-GlcNAc Atlas" ], [ "Q07872-1", "protein_xref_oglcnac_atlas", "Q07872", "O-GlcNAc Atlas" ], [ "P43610-1", "protein_xref_oglcnac_atlas", "P43610", "O-GlcNAc Atlas" ], [ "P43620-1", "protein_xref_oglcnac_atlas", "P43620", "O-GlcNAc Atlas" ], [ "P36070-1", "protein_xref_oglcnac_atlas", "P36070", "O-GlcNAc Atlas" ], [ "P40693-1", "protein_xref_oglcnac_atlas", "P40693", "O-GlcNAc Atlas" ], [ "P39523-1", "protein_xref_oglcnac_atlas", "P39523", "O-GlcNAc Atlas" ], [ "P53552-1", "protein_xref_oglcnac_atlas", "P53552", "O-GlcNAc Atlas" ], [ "P32828-1", "protein_xref_oglcnac_atlas", "P32828", "O-GlcNAc Atlas" ], [ "Q03306-1", "protein_xref_oglcnac_atlas", "Q03306", "O-GlcNAc Atlas" ], [ "P34246-1", "protein_xref_oglcnac_atlas", "P34246", "O-GlcNAc Atlas" ], [ "P39962-1", "protein_xref_oglcnac_atlas", "P39962", "O-GlcNAc Atlas" ], [ "P35197-1", "protein_xref_oglcnac_atlas", "P35197", "O-GlcNAc Atlas" ], [ "P47135-1", "protein_xref_oglcnac_atlas", "P47135", "O-GlcNAc Atlas" ], [ "P39083-1", "protein_xref_oglcnac_atlas", "P39083", "O-GlcNAc Atlas" ], [ "Q04149-1", "protein_xref_oglcnac_atlas", "Q04149", "O-GlcNAc Atlas" ], [ "P36086-1", "protein_xref_oglcnac_atlas", "P36086", "O-GlcNAc Atlas" ], [ "P32356-1", "protein_xref_oglcnac_atlas", "P32356", "O-GlcNAc Atlas" ], [ "P33750-1", "protein_xref_oglcnac_atlas", "P33750", "O-GlcNAc Atlas" ], [ "P38903-1", "protein_xref_oglcnac_atlas", "P38903", "O-GlcNAc Atlas" ], [ "Q12124-1", "protein_xref_oglcnac_atlas", "Q12124", "O-GlcNAc Atlas" ], [ "Q7LHG5-1", "protein_xref_oglcnac_atlas", "Q7LHG5", "O-GlcNAc Atlas" ], [ "Q06407-1", "protein_xref_oglcnac_atlas", "Q06407", "O-GlcNAc Atlas" ], [ "P34909-1", "protein_xref_oglcnac_atlas", "P34909", "O-GlcNAc Atlas" ], [ "Q06409-1", "protein_xref_oglcnac_atlas", "Q06409", "O-GlcNAc Atlas" ], [ "P11978-1", "protein_xref_oglcnac_atlas", "P11978", "O-GlcNAc Atlas" ], [ "P34761-1", "protein_xref_oglcnac_atlas", "P34761", "O-GlcNAc Atlas" ], [ "Q04545-1", "protein_xref_oglcnac_atlas", "Q04545", "O-GlcNAc Atlas" ], [ "Q03833-1", "protein_xref_oglcnac_atlas", "Q03833", "O-GlcNAc Atlas" ], [ "P34072-1", "protein_xref_oglcnac_atlas", "P34072", "O-GlcNAc Atlas" ], [ "Q08446-1", "protein_xref_oglcnac_atlas", "Q08446", "O-GlcNAc Atlas" ], [ "P22211-1", "protein_xref_oglcnac_atlas", "P22211", "O-GlcNAc Atlas" ], [ "Q01477-1", "protein_xref_oglcnac_atlas", "Q01477", "O-GlcNAc Atlas" ], [ "P34228-1", "protein_xref_oglcnac_atlas", "P34228", "O-GlcNAc Atlas" ], [ "Q06704-1", "protein_xref_oglcnac_atlas", "Q06704", "O-GlcNAc Atlas" ], [ "P38041-1", "protein_xref_oglcnac_atlas", "P38041", "O-GlcNAc Atlas" ], [ "P38042-1", "protein_xref_oglcnac_atlas", "P38042", "O-GlcNAc Atlas" ], [ "Q03337-1", "protein_xref_oglcnac_atlas", "Q03337", "O-GlcNAc Atlas" ], [ "P53924-1", "protein_xref_oglcnac_atlas", "P53924", "O-GlcNAc Atlas" ], [ "Q07834-1", "protein_xref_oglcnac_atlas", "Q07834", "O-GlcNAc Atlas" ], [ "P25846-1", "protein_xref_oglcnac_atlas", "P25846", "O-GlcNAc Atlas" ], [ "Q12100-1", "protein_xref_oglcnac_atlas", "Q12100", "O-GlcNAc Atlas" ], [ "P22470-1", "protein_xref_oglcnac_atlas", "P22470", "O-GlcNAc Atlas" ], [ "P29295-1", "protein_xref_oglcnac_atlas", "P29295", "O-GlcNAc Atlas" ], [ "P40523-1", "protein_xref_oglcnac_atlas", "P40523", "O-GlcNAc Atlas" ], [ "Q06685-1", "protein_xref_oglcnac_atlas", "Q06685", "O-GlcNAc Atlas" ], [ "Q06683-1", "protein_xref_oglcnac_atlas", "Q06683", "O-GlcNAc Atlas" ] ] }, "readme": "Name\n - Yeast UniProtKB Xref O-GlcNAcAtlas\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2023-03-14T18:15:28.807Z\n\nModified on\n - 2023-09-11T20:26:07\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Yeast UniProtKB Xref O-GlcNAcAtlas dataset contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced to O-GlcNAcAtlas database accessions/identifiers. If you use this dataset please provide proper attribution to O-GlcNAcAtlas and GlyGen. O-GlcNAcAtlas is a a rigorously curated database for experimentally identified O-GlcNAc sites/proteins (https://oglcnac.org/atlas/)\n\nDescription Domain\n Keywords\n - Cross-references\n - Drosophila\n - O-GlcNAcAtlas\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to O-GlcNAcAtlas database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: yeast_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Output Subdomain\n Name: yeast_protein_xref_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_xref_oglcnac_atlas.csv\n Name: yeast_protein_xref_oglcnac_atlas.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_xref_oglcnac_atlas.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"462\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"462\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/yeast_protein_xref_oglcnac_atlas.csv" }