{ "bcoid": "GLY_000784", "title": "Yeast UniProtKB Xref IntAct", "description": "The Yeast UniProtKB Xref IntAct dataset contains yeast [taxid:559292] UniProtKB canonical accessions ...", "filename": "yeast_protein_xref_intact.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Intact" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P30619-1...", "protein_xref..." ], [ "P39970-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30619-1", "protein_xref_intact", "P30619", "" ], [ "P39970-1", "protein_xref_intact", "P39970", "" ], [ "P39971-1", "protein_xref_intact", "P39971", "" ], [ "P39976-1", "protein_xref_intact", "P39976", "" ], [ "P39977-1", "protein_xref_intact", "P39977", "" ], [ "P39975-1", "protein_xref_intact", "P39975", "" ], [ "P39979-1", "protein_xref_intact", "P39979", "" ], [ "Q07959-1", "protein_xref_intact", "Q07959", "" ], [ "P25379-1", "protein_xref_intact", "P25379", "" ], [ "P25378-1", "protein_xref_intact", "P25378", "" ], [ "P17121-1", "protein_xref_intact", "P17121", "" ], [ "P25374-1", "protein_xref_intact", "P25374", "" ], [ "P17123-1", "protein_xref_intact", "P17123", "" ], [ "P17122-1", "protein_xref_intact", "P17122", "" ], [ "P25371-1", "protein_xref_intact", "P25371", "" ], [ "P25373-1", "protein_xref_intact", "P25373", "" ], [ "P25372-1", "protein_xref_intact", "P25372", "" ], [ "Q06568-1", "protein_xref_intact", "Q06568", "" ], [ "Q03049-1", "protein_xref_intact", "Q03049", "" ], [ "Q06567-1", "protein_xref_intact", "Q06567", "" ], [ "Q06563-1", "protein_xref_intact", "Q06563", "" ], [ "Q00539-1", "protein_xref_intact", "Q00539", "" ], [ "Q07748-1", "protein_xref_intact", "Q07748", "" ], [ "Q07963-1", "protein_xref_intact", "Q07963", "" ], [ "Q07746-1", "protein_xref_intact", "Q07746", "" ], [ "Q00246-1", "protein_xref_intact", "Q00246", "" ], [ "Q00245-1", "protein_xref_intact", "Q00245", "" ], [ "P40422-1", "protein_xref_intact", "P40422", "" ], [ "P0CX67-1", "protein_xref_intact", "P0CX67", "" ], [ "P18494-1", "protein_xref_intact", "P18494", "" ], [ "P18496-1", "protein_xref_intact", "P18496", "" ], [ "Q03441-1", "protein_xref_intact", "Q03441", "" ], [ "Q08748-1", "protein_xref_intact", "Q08748", "" ], [ "Q08749-1", "protein_xref_intact", "Q08749", "" ], [ "Q08746-1", "protein_xref_intact", "Q08746", "" ], [ "Q08747-1", "protein_xref_intact", "Q08747", "" ], [ "Q08745-1", "protein_xref_intact", "Q08745", "" ], [ "Q08742-1", "protein_xref_intact", "Q08742", "" ], [ "Q08743-1", "protein_xref_intact", "Q08743", "" ], [ "P32915-1", "protein_xref_intact", "P32915", "" ], [ "P32914-1", "protein_xref_intact", "P32914", "" ], [ "P32917-1", "protein_xref_intact", "P32917", "" ], [ "P32916-1", "protein_xref_intact", "P32916", "" ], [ "P32911-1", "protein_xref_intact", "P32911", "" ], [ "P32910-1", "protein_xref_intact", "P32910", "" ], [ "P32913-1", "protein_xref_intact", "P32913", "" ], [ "P32912-1", "protein_xref_intact", "P32912", "" ], [ "Q04439-1", "protein_xref_intact", "Q04439", "" ], [ "Q04430-1", "protein_xref_intact", "Q04430", "" ], [ "Q04431-1", "protein_xref_intact", "Q04431", "" ], [ "Q04432-1", "protein_xref_intact", "Q04432", "" ], [ "Q04433-1", "protein_xref_intact", "Q04433", "" ], [ "Q04436-1", "protein_xref_intact", "Q04436", "" ], [ "Q04437-1", "protein_xref_intact", "Q04437", "" ], [ "P00546-1", "protein_xref_intact", "P00546", "" ], [ "P04385-1", "protein_xref_intact", "P04385", "" ], [ "P04387-1", "protein_xref_intact", "P04387", "" ], [ "P04386-1", "protein_xref_intact", "P04386", "" ], [ "Q08562-1", "protein_xref_intact", "Q08562", "" ], [ "Q08561-1", "protein_xref_intact", "Q08561", "" ], [ "P25377-1", "protein_xref_intact", "P25377", "" ], [ "P25376-1", "protein_xref_intact", "P25376", "" ], [ "P32474-1", "protein_xref_intact", "P32474", "" ], [ "P04037-1", "protein_xref_intact", "P04037", "" ], [ "P04039-1", "protein_xref_intact", "P04039", "" ], [ "Q05955-1", "protein_xref_intact", "Q05955", "" ], [ "P00724-1", "protein_xref_intact", "P00724", "" ], [ "P00729-1", "protein_xref_intact", "P00729", "" ], [ "Q03048-1", "protein_xref_intact", "Q03048", "" ], [ "P50896-1", "protein_xref_intact", "P50896", "" ], [ "P32786-1", "protein_xref_intact", "P32786", "" ], [ "Q02872-1", "protein_xref_intact", "Q02872", "" ], [ "Q02873-1", "protein_xref_intact", "Q02873", "" ], [ "Q02875-1", "protein_xref_intact", "Q02875", "" ], [ "P36096-1", "protein_xref_intact", "P36096", "" ], [ "Q10740-1", "protein_xref_intact", "Q10740", "" ], [ "Q05471-1", "protein_xref_intact", "Q05471", "" ], [ "Q04170-1", "protein_xref_intact", "Q04170", "" ], [ "Q03220-1", "protein_xref_intact", "Q03220", "" ], [ "P53045-1", "protein_xref_intact", "P53045", "" ], [ "P53157-1", "protein_xref_intact", "P53157", "" ], [ "Q07747-1", "protein_xref_intact", "Q07747", "" ], [ "P19073-1", "protein_xref_intact", "P19073", "" ], [ "P53040-1", "protein_xref_intact", "P53040", "" ] ] }, "readme": "Name\n - Yeast UniProtKB Xref IntAct\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-08-31T13:13:10.878546\n\nModified on\n - 2023-09-11T20:22:32\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast UniProtKB Xref IntAct dataset contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced to IntAct database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available. The IntAct Team also produce the Complex Portal. \n\nDescription Domain\n Keywords\n - molecular interaction data\n - protein-protein interaction\n - IntAct\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to IntAct database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_xref_intact.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_xref_intact.csv\n Name: yeast_protein_xref_intact.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_xref_intact.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"5220\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"5220\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/yeast_protein_xref_intact.csv" }