{ "bcoid": "GLY_000779", "title": "Yeast UniProtKB Xref CAZy", "description": "The Yeast UniprotKB Xref CAZy contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced ...", "filename": "yeast_protein_xref_cazy.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Cazy" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P00724-1...", "protein_xref..." ], [ "P33550-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P00724-1", "protein_xref_cazy", "GH32", "Glycoside Hydrolase Family 32" ], [ "P33550-1", "protein_xref_cazy", "GT15", "Glycosyltransferase Family 15" ], [ "P52867-1", "protein_xref_cazy", "GT39", "Glycosyltransferase Family 39" ], [ "Q00764-1", "protein_xref_cazy", "GT20", "Glycosyltransferase Family 20" ], [ "P36135-1", "protein_xref_cazy", "GH132", "Glycoside Hydrolase Family 132" ], [ "P29465-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "Q08295-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "Q12168-1", "protein_xref_cazy", "GH81", "Glycoside Hydrolase Family 81" ], [ "Q06625-1", "protein_xref_cazy", "GH133", "Glycoside Hydrolase Family 133" ], [ "Q06625-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "P33775-1", "protein_xref_cazy", "GT39", "Glycosyltransferase Family 39" ], [ "Q06644-1", "protein_xref_cazy", "GT39", "Glycosyltransferase Family 39" ], [ "P38211-1", "protein_xref_cazy", "GT76", "Glycosyltransferase Family 76" ], [ "Q04739-1", "protein_xref_cazy", "CBM48", "Carbohydrate-Binding Module Family 48" ], [ "P23337-1", "protein_xref_cazy", "GT3", "Glycosyltransferase Family 3" ], [ "P32356-1", "protein_xref_cazy", "GH37", "Glycoside Hydrolase Family 37" ], [ "Q12335-1", "protein_xref_cazy", "AA6", "Auxiliary Activities 6" ], [ "P35172-1", "protein_xref_cazy", "GH37", "Glycoside Hydrolase Family 37" ], [ "P16661-1", "protein_xref_cazy", "GT33", "Glycosyltransferase Family 33" ], [ "Q04174-1", "protein_xref_cazy", "GT22", "Glycosyltransferase Family 22" ], [ "P27472-1", "protein_xref_cazy", "GT3", "Glycosyltransferase Family 3" ], [ "P50108-1", "protein_xref_cazy", "GT34", "Glycosyltransferase Family 34" ], [ "P38069-1", "protein_xref_cazy", "GT71", "Glycosyltransferase Family 71" ], [ "P27810-1", "protein_xref_cazy", "GT15", "Glycosyltransferase Family 15" ], [ "P38888-1", "protein_xref_cazy", "GH47", "Glycoside Hydrolase Family 47" ], [ "P22023-1", "protein_xref_cazy", "GT24", "Glycosyltransferase Family 24" ], [ "P40504-1", "protein_xref_cazy", "GT15", "Glycosyltransferase Family 15" ], [ "P31688-1", "protein_xref_cazy", "GT20", "Glycosyltransferase Family 20" ], [ "P39107-1", "protein_xref_cazy", "GT62", "Glycosyltransferase Family 62" ], [ "P39106-1", "protein_xref_cazy", "GT71", "Glycosyltransferase Family 71" ], [ "P47190-1", "protein_xref_cazy", "GT39", "Glycosyltransferase Family 39" ], [ "P32486-1", "protein_xref_cazy", "GH16", "Glycoside Hydrolase Family 16" ], [ "P40566-1", "protein_xref_cazy", "GH5", "Glycoside Hydrolase Family 5" ], [ "P53008-1", "protein_xref_cazy", "GH63", "Glycoside Hydrolase Family 63" ], [ "P23642-1", "protein_xref_cazy", "GT62", "Glycosyltransferase Family 62" ], [ "P38179-1", "protein_xref_cazy", "GT58", "Glycosyltransferase Family 58" ], [ "P47011-1", "protein_xref_cazy", "GT8", "Glycosyltransferase Family 8" ], [ "Q08193-1", "protein_xref_cazy", "GH72", "Glycoside Hydrolase Family 72" ], [ "P38158-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "P32623-1", "protein_xref_cazy", "GH16", "Glycoside Hydrolase Family 16" ], [ "P32623-1", "protein_xref_cazy", "CBM18", "Carbohydrate-Binding Module Family 18" ], [ "P32629-1", "protein_xref_cazy", "GT62", "Glycosyltransferase Family 62" ], [ "P53616-1", "protein_xref_cazy", "GH132", "Glycoside Hydrolase Family 132" ], [ "P53334-1", "protein_xref_cazy", "GH17", "Glycoside Hydrolase Family 17" ], [ "Q06350-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "P22146-1", "protein_xref_cazy", "CBM43", "Carbohydrate-Binding Module Family 43" ], [ "P22146-1", "protein_xref_cazy", "GH72", "Glycoside Hydrolase Family 72" ], [ "P32775-1", "protein_xref_cazy", "CBM48", "Carbohydrate-Binding Module Family 48" ], [ "P32775-1", "protein_xref_cazy", "GH13", "Glycoside Hydrolase Family 13" ], [ "P38138-1", "protein_xref_cazy", "GH31", "Glycoside Hydrolase Family 31" ], [ "P38131-1", "protein_xref_cazy", "GT15", "Glycosyltransferase Family 15" ], [ "P38130-1", "protein_xref_cazy", "GT15", "Glycosyltransferase Family 15" ], [ "P29029-1", "protein_xref_cazy", "GH18", "Glycoside Hydrolase Family 18" ], [ "P29029-1", "protein_xref_cazy", "CBM19", "Carbohydrate-Binding Module Family 19" ], [ "P53189-1", "protein_xref_cazy", "GH17", "Glycoside Hydrolase Family 17" ], [ "P36091-1", "protein_xref_cazy", "GH76", "Glycoside Hydrolase Family 76" ], [ "P52911-1", "protein_xref_cazy", "GH5", "Glycoside Hydrolase Family 5" ], [ "P53301-1", "protein_xref_cazy", "GH16", "Glycoside Hydrolase Family 16" ], [ "P48016-1", "protein_xref_cazy", "GH65", "Glycoside Hydrolase Family 65" ], [ "P33336-1", "protein_xref_cazy", "GH16", "Glycoside Hydrolase Family 16" ], [ "P27809-1", "protein_xref_cazy", "GT15", "Glycosyltransferase Family 15" ], [ "Q12205-1", "protein_xref_cazy", "GH47", "Glycoside Hydrolase Family 47" ], [ "Q08271-1", "protein_xref_cazy", "GH72", "Glycoside Hydrolase Family 72" ], [ "Q05790-1", "protein_xref_cazy", "GH16", "Glycoside Hydrolase Family 16" ], [ "Q05790-1", "protein_xref_cazy", "CBM18", "Carbohydrate-Binding Module Family 18" ], [ "Q06216-1", "protein_xref_cazy", "CBM21", "Carbohydrate-Binding Module Family 21" ], [ "P40350-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "P40351-1", "protein_xref_cazy", "GT57", "Glycosyltransferase Family 57" ], [ "P40036-1", "protein_xref_cazy", "CBM21", "Carbohydrate-Binding Module Family 21" ], [ "P36143-1", "protein_xref_cazy", "GT8", "Glycosyltransferase Family 8" ], [ "P38427-1", "protein_xref_cazy", "GT20", "Glycosyltransferase Family 20" ], [ "P38426-1", "protein_xref_cazy", "GT20", "Glycosyltransferase Family 20" ], [ "P53966-1", "protein_xref_cazy", "GT15", "Glycosyltransferase Family 15" ], [ "P53745-1", "protein_xref_cazy", "GT71", "Glycosyltransferase Family 71" ], [ "P08004-1", "protein_xref_cazy", "GT2", "Glycosyltransferase Family 2" ], [ "P43561-1", "protein_xref_cazy", "AA1", "Auxiliary Activities 1" ], [ "Q04952-1", "protein_xref_cazy", "GT48", "Glycosyltransferase Family 48" ], [ "Q04951-1", "protein_xref_cazy", "GH17", "Glycoside Hydrolase Family 17" ], [ "P32906-1", "protein_xref_cazy", "GH47", "Glycoside Hydrolase Family 47" ], [ "P53730-1", "protein_xref_cazy", "GT22", "Glycosyltransferase Family 22" ], [ "P40187-1", "protein_xref_cazy", "CBM21", "Carbohydrate-Binding Module Family 21" ], [ "P32603-1", "protein_xref_cazy", "GH5", "Glycoside Hydrolase Family 5" ], [ "P53753-1", "protein_xref_cazy", "GH81", "Glycoside Hydrolase Family 81" ], [ "P32363-1", "protein_xref_cazy", "GT4", "Glycosyltransferase Family 4" ] ] }, "readme": "Name\n - Yeast UniProtKB Xref CAZy\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-08-31T12:46:03.864774\n\nModified on\n - 2023-09-11T20:19:30\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast UniprotKB Xref CAZy contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced to CAZy database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - CAZy is a database of Carbohydrate-Active enZYmes (CAZymes). The database contains a classification and associated information about enzymes involved in the synthesis, metabolism, and recognition of complex carbohydrates.\n\nDescription Domain\n Keywords\n - carbohydrate family\n - CAZy\n - glycosyltransferase\n - glycohydrolase\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CAZy database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_xref_cazy.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_xref_cazy.csv\n Name: yeast_protein_xref_cazy.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_xref_cazy.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"125\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"49\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"49\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/yeast_protein_xref_cazy.csv" }