{ "bcoid": "GLY_000778", "title": "Yeast UniProtKB Xref BRENDA", "description": "The Yeast UniprotKB Xref BRENDA contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced ...", "filename": "yeast_protein_xref_brenda.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Brenda" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P39976-1...", "protein_xref..." ], [ "P39979-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P39976-1", "protein_xref_brenda", "1.1.99.40", "984" ], [ "P39979-1", "protein_xref_brenda", "2.3.1.48", "984" ], [ "Q04430-1", "protein_xref_brenda", "2.7.1.33", "984" ], [ "Q04432-1", "protein_xref_brenda", "4.2.1.130", "984" ], [ "P00546-1", "protein_xref_brenda", "2.7.11.22", "984" ], [ "P00724-1", "protein_xref_brenda", "3.2.1.26", "984" ], [ "P00729-1", "protein_xref_brenda", "3.4.16.5", "984" ], [ "Q03220-1", "protein_xref_brenda", "3.6.1.74", "984" ], [ "P33734-1", "protein_xref_brenda", "4.3.1.B2", "984" ], [ "P33734-1", "protein_xref_brenda", "4.3.2.10", "984" ], [ "P38961-1", "protein_xref_brenda", "2.1.1.287", "984" ], [ "P52867-1", "protein_xref_brenda", "2.4.1.109", "984" ], [ "Q12513-1", "protein_xref_brenda", "2.3.1.86", "984" ], [ "P50264-1", "protein_xref_brenda", "1.5.3.17", "984" ], [ "P39707-1", "protein_xref_brenda", "4.6.1.16", "984" ], [ "Q00764-1", "protein_xref_brenda", "2.4.1.15", "984" ], [ "P33327-1", "protein_xref_brenda", "1.4.1.2", "984" ], [ "P08524-1", "protein_xref_brenda", "2.5.1.10", "984" ], [ "P43534-1", "protein_xref_brenda", "4.1.99.17", "984" ], [ "P21182-1", "protein_xref_brenda", "4.1.1.50", "984" ], [ "P36132-1", "protein_xref_brenda", "2.3.1.234", "984" ], [ "P36136-1", "protein_xref_brenda", "3.1.3.11", "984" ], [ "P39956-1", "protein_xref_brenda", "1.14.11.69", "984" ], [ "P38891-1", "protein_xref_brenda", "2.6.1.42", "984" ], [ "Q07729-1", "protein_xref_brenda", "3.5.4.3", "984" ], [ "P32264-1", "protein_xref_brenda", "2.7.2.11", "984" ], [ "P29465-1", "protein_xref_brenda", "2.4.1.16", "984" ], [ "P29468-1", "protein_xref_brenda", "2.7.7.19", "984" ], [ "P53550-1", "protein_xref_brenda", "3.6.1.62", "984" ], [ "Q08548-1", "protein_xref_brenda", "2.3.1.23", "984" ], [ "Q08548-1", "protein_xref_brenda", "2.3.1.51", "984" ], [ "P53720-1", "protein_xref_brenda", "1.3.1.91", "984" ], [ "P27680-1", "protein_xref_brenda", "2.1.1.114", "984" ], [ "P27680-1", "protein_xref_brenda", "2.1.1.222", "984" ], [ "P27680-1", "protein_xref_brenda", "2.1.1.64", "984" ], [ "Q08295-1", "protein_xref_brenda", "3.2.1.10", "984" ], [ "P27466-1", "protein_xref_brenda", "2.7.11.17", "984" ], [ "P40857-1", "protein_xref_brenda", "4.2.1.134", "984" ], [ "P40327-1", "protein_xref_brenda", "5.6.1.5", "984" ], [ "P38230-1", "protein_xref_brenda", "1.6.5.5", "984" ], [ "P38238-1", "protein_xref_brenda", "2.1.1.205", "984" ], [ "P43550-1", "protein_xref_brenda", "2.7.1.29", "984" ], [ "P43553-1", "protein_xref_brenda", "7.2.2.14", "984" ], [ "P02829-1", "protein_xref_brenda", "3.6.4.10", "984" ], [ "Q12083-1", "protein_xref_brenda", "3.6.1.3", "984" ], [ "P11412-1", "protein_xref_brenda", "1.1.1.49", "984" ], [ "Q00955-1", "protein_xref_brenda", "6.3.4.14", "984" ], [ "Q00955-1", "protein_xref_brenda", "6.4.1.2", "984" ], [ "P25333-1", "protein_xref_brenda", "2.7.11.1", "984" ], [ "P50873-1", "protein_xref_brenda", "2.7.11.26", "984" ], [ "P05030-1", "protein_xref_brenda", "7.1.2.1", "984" ], [ "P39010-1", "protein_xref_brenda", "2.3.1.225", "984" ], [ "Q08702-1", "protein_xref_brenda", "3.1.11.7", "984" ], [ "Q08702-1", "protein_xref_brenda", "3.6.1.71", "984" ], [ "Q01159-1", "protein_xref_brenda", "2.7.7.50", "984" ], [ "P47116-1", "protein_xref_brenda", "2.7.11.1", "984" ], [ "P53965-1", "protein_xref_brenda", "3.1.3.48", "984" ], [ "P46995-1", "protein_xref_brenda", "2.1.1.359", "984" ], [ "P43619-1", "protein_xref_brenda", "2.4.2.19", "984" ], [ "P32377-1", "protein_xref_brenda", "4.1.1.33", "984" ], [ "P32378-1", "protein_xref_brenda", "2.5.1.39", "984" ], [ "P38820-1", "protein_xref_brenda", "2.7.7.B4", "984" ], [ "P38820-1", "protein_xref_brenda", "2.8.1.B2", "984" ], [ "P33775-1", "protein_xref_brenda", "2.4.1.109", "984" ], [ "P38920-1", "protein_xref_brenda", "3.6.1.3", "984" ], [ "Q03148-1", "protein_xref_brenda", "4.3.3.6", "984" ], [ "P22434-1", "protein_xref_brenda", "3.1.4.17", "984" ], [ "P16467-1", "protein_xref_brenda", "4.1.1.1", "984" ], [ "Q06644-1", "protein_xref_brenda", "2.4.1.109", "984" ], [ "P39524-1", "protein_xref_brenda", "7.6.2.1", "984" ], [ "P38218-1", "protein_xref_brenda", "3.1.3.84", "984" ], [ "P32561-1", "protein_xref_brenda", "3.5.1.98", "984" ], [ "P32562-1", "protein_xref_brenda", "2.7.11.21", "984" ], [ "P32567-1", "protein_xref_brenda", "3.1.3.4", "984" ], [ "P53086-1", "protein_xref_brenda", "5.6.1.3", "984" ], [ "P15496-1", "protein_xref_brenda", "5.3.3.2", "984" ], [ "P38615-1", "protein_xref_brenda", "2.7.11.26", "984" ], [ "P39112-1", "protein_xref_brenda", "3.1.13.1", "984" ], [ "Q02555-1", "protein_xref_brenda", "3.1.26.3", "984" ], [ "Q04739-1", "protein_xref_brenda", "2.7.11.31", "984" ], [ "P39962-1", "protein_xref_brenda", "2.7.11.1", "984" ], [ "P09201-1", "protein_xref_brenda", "3.1.3.11", "984" ], [ "P35196-1", "protein_xref_brenda", "2.5.1.87", "984" ], [ "P53942-1", "protein_xref_brenda", "3.1.26.4", "984" ] ] }, "readme": "Name\n - Yeast UniProtKB Xref BRENDA\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-08-31T12:42:59.923930\n\nModified on\n - 2023-09-11T20:19:06\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast UniprotKB Xref BRENDA contains yeast [taxid:559292] UniProtKB canonical accessions cross-referenced to BRENDA database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - BRENDA is an information system representing one of the most comprehensive enzyme repositories. It is an electronic resource that comprises molecular and biochemical information on enzymes that have been classified by the IUBMB.\n\nDescription Domain\n Keywords\n - enzyme\n - ec number\n - BRENDA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to BRENDA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_xref_brenda.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_xref_brenda.csv\n Name: yeast_protein_xref_brenda.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_xref_brenda.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"677\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"503\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"6\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/yeast_protein_xref_brenda.csv" }