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"enzyme", "P18562", "UniProtKB" ], [ "21240", "P18898-1", "", "enzyme", "P18898", "UniProtKB" ], [ "46608", "P18961-1", "", "enzyme", "P18961", "UniProtKB" ], [ "17989", "P18961-1", "", "enzyme", "P18961", "UniProtKB" ] ] }, "readme": "Name\n - Yeast Reaction Participants (Rhea)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-09-06T12:06:00.142793\n\nModified on\n - 2023-09-11T19:14:47\n\nCreated by\n - [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Yeast Protein Reaction Participants (Rhea) dataset contains reactions participants information for pathways for yeast [taxid:559292] UniProtKB accessions that includes reaction IDs, participant ID, participant name, role, xref ID etc from Rhea database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, Rhea and GlyGen\n\nDescription Domain\n Keywords\n - Rhea\n - Participants\n - Reactions\n\n Pipeline Steps\n - Step-1: The script loads the Rhea participant data from the triplestore containing triples from nt file to retrieve the information extracts the dataset in the csv format.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_participants_rhea.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_participants_rhea.csv\n Name: yeast_protein_participants_rhea.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_participants_rhea.stat.csv\n\nFields\n Name: \"reaction_id\"\n Description: \"The identifier assigned to a reaction in Reactome database\"\n Unique Values: \"1137\"\n Name: \"participant_id\"\n Description: \"\"\n Unique Values: \"1379\"\n Name: \"participant_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"role\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1379\"\n Name: \"xref_type\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/yeast_protein_participants_rhea.csv" }