{ "bcoid": "GLY_000745", "title": "Yeast Protein Binary Interactions (IntAct)", "description": "The Yeast Protein Binary Interaction (IntAct) dataset contains yeast [taxid:10116] binary interaction ...", "filename": "yeast_protein_binary_interactions.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Binary Interaction" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P34232-1...", "EBI-11585..." ], [ "P34232-1...", "EBI-11585..." ] ], "headers": [ "uniprotkb_ca...", "intact_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "intact_ac" }, { "type": "string", "label": "participant_uniprotkb_ac" }, { "type": "string", "label": "participant_intact_ac" }, { "type": "string", "label": "participant_uniprotkb_id" }, { "type": "string", "label": "participant_gene_symbol" }, { "type": "string", "label": "participant_taxid" }, { "type": "string", "label": "experiments" } ], [ "P34232-1", "EBI-11585", "P34232", "EBI-11585", "MTR2_YEAST", "MTR2", "559292", "2" ], [ "P34232-1", "EBI-11585", "Q99257", "EBI-11642", "MEX67_YEAST", "MEX67", "559292", "2" ], [ "Q06102-1", "EBI-38049", "Q06102", "EBI-38049", "YTH1_YEAST", "YTH1", "559292", "4" ], [ "Q06102-1", "EBI-38049", "Q06224", "EBI-38345", "YSH1_YEAST", "YSH1", "559292", "4" ], [ "Q06102-1", "EBI-38049", "Q06102", "EBI-38049", "YTH1_YEAST", "YTH1", "559292", "5" ], [ "Q06102-1", "EBI-38049", "P45976", "EBI-6940", "FIP1_YEAST", "FIP1", "559292", "5" ], [ "Q06103-1", "EBI-15940", "P40016", "EBI-15927", "RPN3_YEAST", "RPN3", "559292", "7" ], [ "Q06103-1", "EBI-15940", "Q06103", "EBI-15940", "RPN7_YEAST", "RPN7", "559292", "7" ], [ "Q06103-1", "EBI-15940", "Q06103", "EBI-15940", "RPN7_YEAST", "RPN7", "559292", "3" ], [ "Q06103-1", "EBI-15940", "O94742", "EBI-31337", "SEM1_YEAST", "SEM1", "559292", "3" ], [ "Q06106-1", "EBI-34383", "P53254", "EBI-1878", "UTP22_YEAST", "UTP22", "559292", "3" ], [ "Q06106-1", "EBI-34383", "Q06106", "EBI-34383", "MRD1_YEAST", "MRD1", "559292", "3" ], [ "P30619-1", "EBI-16833", "P30619", "EBI-16833", "SEC1_YEAST", "SEC1", "559292", "3" ], [ "P30619-1", "EBI-16833", "P53604", "EBI-2086543", "MSO1_YEAST", "MSO1", "559292", "3" ], [ "P40554-1", "EBI-24940", "P53088", "EBI-24137", "CTU1_YEAST", "NCS6", "559292", "3" ], [ "P40554-1", "EBI-24940", "P38820", "EBI-24676", "UBA4_YEAST", "UBA4", "559292", "7" ], [ "P40554-1", "EBI-24940", "P40554", "EBI-24940", "URM1_YEAST", "URM1", "559292", "3" ], [ "P40554-1", "EBI-24940", "P40554", "EBI-24940", "URM1_YEAST", "URM1", "559292", "7" ], [ "P40555-1", "EBI-14024", "P33297", "EBI-13920", "PRS6A_YEAST", "RPT5", "559292", "8" ], [ "P40555-1", "EBI-14024", "P40555", "EBI-14024", "PSMD9_YEAST", "NAS2", "559292", "8" ], [ "P40555-1", "EBI-14024", "P40555", "EBI-14024", "PSMD9_YEAST", "NAS2", "559292", "3" ], [ "P40555-1", "EBI-14024", "P38872", "EBI-24859", "ADY1_YEAST", "PFS1", "559292", "3" ], [ "P39970-1", "EBI-22524", "P40535", "EBI-2052", "ACA2_YEAST", "CST6", "559292", "2" ], [ "P39970-1", "EBI-22524", "P39970", "EBI-22524", "ACA1_YEAST", "ACA1", "559292", "2" ], [ "P48562-1", "EBI-4750", "P29366", "EBI-3508", "BEM1_YEAST", "BEM1", "559292", "9" ], [ "P48562-1", "EBI-4750", "P11433", "EBI-4220", "CDC24_YEAST", "CDC24", "559292", "5" ], [ "P48562-1", "EBI-4750", "P48562", "EBI-4750", "CLA4_YEAST", "CLA4", "559292", "9" ], [ "P48562-1", "EBI-4750", "P48562", "EBI-4750", "CLA4_YEAST", "CLA4", "559292", "5" ], [ "P48562-1", "EBI-4750", "Q04439", "EBI-11687", "MYO5_YEAST", "MYO5", "559292", "3" ], [ "P48562-1", "EBI-4750", "Q12163", "EBI-34713", "NBP2_YEAST", "NBP2", "559292", "3" ], [ "P48562-1", "EBI-4750", "P48562", "EBI-4750", "CLA4_YEAST", "CLA4", "559292", "3" ], [ "P48562-1", "EBI-4750", "P48562", "EBI-4750", "CLA4_YEAST", "CLA4", "559292", "3" ], [ "P10659-1", "EBI-10789", "P10659", "EBI-10789", "METK1_YEAST", "SAM1", "559292", "4" ], [ "P10659-1", "EBI-10789", "P19358", "EBI-10795", "METK2_YEAST", "SAM2", "559292", "4" ], [ "P40558-1", "EBI-24924", "P52920", "EBI-11880", "NBP35_YEAST", "NBP35", "559292", "9" ], [ "P40558-1", "EBI-24924", "P40558", "EBI-24924", "CFD1_YEAST", "CFD1", "559292", "9" ], [ "P40559-1", "EBI-24915", "P40559", "EBI-24915", "INP51_YEAST", "INP51", "559292", "3" ], [ "P40559-1", "EBI-24915", "P40559", "EBI-24915", "INP51_YEAST", "INP51", "559292", "3" ], [ "P40559-1", "EBI-24915", "P47030", "EBI-25970", "TAX4_YEAST", "TAX4", "559292", "3" ], [ "P40559-1", "EBI-24915", "P36115", "EBI-27090", "IRS4_YEAST", "IRS4", "559292", "3" ], [ "Q03446-1", "EBI-18180", "P39940", "EBI-16219", "RSP5_YEAST", "RSP5", "559292", "2" ], [ "Q03446-1", "EBI-18180", "Q03446", "EBI-18180", "RCR2_YEAST", "RCR2", "559292", "2" ], [ "Q03195-1", "EBI-35146", "Q03195", "EBI-35146", "RLI1_YEAST", "RLI1", "559292", "2" ], [ "Q03195-1", "EBI-35146", "Q6Q7I0", "EBI-7724365", "Q6Q7I0_YEASX", "SUP35", "4932", "2" ], [ "Q03195-1", "EBI-35146", "Q03195", "EBI-35146", "RLI1_YEAST", "RLI1", "559292", "5" ], [ "Q03195-1", "EBI-35146", "P12385", "EBI-6533", "ERF1_YEAST", "SUP45", "559292", "5" ], [ "Q03195-1", "EBI-35146", "Q03195", "EBI-35146", "RLI1_YEAST", "RLI1", "559292", "4" ], [ "Q03195-1", "EBI-35146", "Q05775", "EBI-8944", "EIF3J_YEAST", "HCR1", "559292", "4" ], [ "P25379-1", "EBI-3804607", "P38622", "EBI-14880", "RCK1_YEAST", "RCK1", "559292", "2" ], [ "P25379-1", "EBI-3804607", "P25379", "EBI-3804607", "STDH_YEAST", "CHA1", "559292", "2" ], [ "P25378-1", "EBI-15113", "P25378", "EBI-15113", "RHEB_YEAST", "RHB1", "559292", "2" ], [ "P25378-1", "EBI-15113", "P53286", "EBI-3796", "BTN2_YEAST", "BTN2", "559292", "2" ], [ "P38193-1", "EBI-21239", "P32345", "EBI-12759", "PP4C_YEAST", "PPH3", "559292", "10" ], [ "P38193-1", "EBI-21239", "P38193", "EBI-21239", "PP4R2_YEAST", "PSY4", "559292", "10" ], [ "P38193-1", "EBI-21239", "P38193", "EBI-21239", "PP4R2_YEAST", "PSY4", "559292", "9" ], [ "P38193-1", "EBI-21239", "P40164", "EBI-29107", "PP4R3_YEAST", "PSY2", "559292", "9" ], [ "P25374-1", "EBI-11991", "P25374", "EBI-11991", "NFS1_YEAST", "NFS1", "559292", "3" ], [ "P25374-1", "EBI-11991", "P25374", "EBI-11991", "NFS1_YEAST", "NFS1", "559292", "10" ], [ "P25374-1", "EBI-11991", "Q03020", "EBI-29901", "ISU1_YEAST", "ISU1", "559292", "3" ], [ "P25374-1", "EBI-11991", "Q6Q560", "EBI-784315", "ISD11_YEAST", "ISD11", "559292", "10" ], [ "P25377-1", "EBI-2347652", "P25377", "EBI-2347652", "ADH7_YEAST", "ADH7", "559292", "2" ], [ "P25377-1", "EBI-2347652", "Q12265", "EBI-9886", "KPR5_YEAST", "PRS5", "559292", "2" ], [ "P25373-1", "EBI-7903", "P34230", "EBI-2464632", "PXA2_YEAST", "PXA2", "559292", "2" ], [ "P25373-1", "EBI-7903", "P25373", "EBI-7903", "GLRX1_YEAST", "GRX1", "559292", "2" ], [ "Q03048-1", "EBI-4853", "P60010", "EBI-2169", "ACT_YEAST", "ACT1", "559292", "3" ], [ "Q03048-1", "EBI-4853", "Q03048", "EBI-4853", "COFI_YEAST", "COF1", "559292", "3" ], [ "Q03048-1", "EBI-4853", "P39109", "EBI-21779", "YCFI_YEAST", "YCF1", "559292", "2" ], [ "Q03048-1", "EBI-4853", "Q03048", "EBI-4853", "COFI_YEAST", "COF1", "559292", "2" ], [ "Q03048-1", "EBI-4853", "P68135", "EBI-367540", "ACTS_RABIT", "ACTA1", "9986", "3" ], [ "Q03048-1", "EBI-4853", "Q03048", "EBI-4853", "COFI_YEAST", "COF1", "559292", "3" ], [ "Q03768-1", "EBI-7618", "P53295", "EBI-23421", "RBG2_YEAST", "RBG2", "559292", "5" ], [ "Q03768-1", "EBI-7618", "Q03768", "EBI-7618", "GIR2_YEAST", "GIR2", "559292", "5" ], [ "P38757-1", "EBI-24435", "P18410", "EBI-17857", "SPO7_YEAST", "SPO7", "559292", "3" ], [ "P38757-1", "EBI-24435", "P38757", "EBI-24435", "NEM1_YEAST", "NEM1", "559292", "3" ], [ "P38753-1", "EBI-1382", "P0CG53", "EBI-5333021", "UBB_BOVIN", "UBB", "9913", "2" ], [ "P38753-1", "EBI-1382", "P36037", "EBI-6017", "DOA1_YEAST", "DOA1", "559292", "3" ], [ "P38753-1", "EBI-1382", "P38753", "EBI-1382", "HSE1_YEAST", "HSE1", "559292", "4" ], [ "P38753-1", "EBI-1382", "P38753", "EBI-1382", "HSE1_YEAST", "HSE1", "559292", "8" ], [ "P38753-1", "EBI-1382", "P38753", "EBI-1382", "HSE1_YEAST", "HSE1", "559292", "4" ], [ "P38753-1", "EBI-1382", "P38753", "EBI-1382", "HSE1_YEAST", "HSE1", "559292", "2" ], [ "P38753-1", "EBI-1382", "P38753", "EBI-1382", "HSE1_YEAST", "HSE1", "559292", "3" ], [ "P38753-1", "EBI-1382", "P38753", "EBI-1382", "HSE1_YEAST", "HSE1", "559292", "2" ], [ "P38753-1", "EBI-1382", "P38753", "EBI-1382", "HSE1_YEAST", "HSE1", "559292", "3" ], [ "P38753-1", "EBI-1382", "P40453", "EBI-19857", "UBP7_YEAST", "UBP7", "559292", "4" ] ] }, "readme": "Name\n - Yeast Protein Binary Interactions (IntAct)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-09-06T12:13:07.540218\n\nModified on\n - 2023-09-11T18:54:23\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast Protein Binary Interaction (IntAct) dataset contains yeast [taxid:10116] binary interaction data for UniProtKB canonical accession from IntAct database. The data is quality filtered by UniProt from IntAct and contains information about the interactors, number of experiments, IntAct Ids etc. If you use this dataset please provide proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - Binary Interactions\n - IntAct\n - UniProtKB\n\n Pipeline Steps\n - Step-0: The script loads the binary interactions data for UniProtKB canonical interactions from the triplestore and extracts it as a dataset in csv format\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-saccharomyces-cerevisiae.nt\n Output Subdomain\n Name: yeast_protein_binary_interactions.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_binary_interactions.csv\n Name: yeast_protein_binary_interactions.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/yeast_protein_binary_interactions.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"2179\"\n Name: \"intact_ac\"\n Description: \"The accession of an interacting protein in IntAct database\"\n Unique Values: \"2179\"\n Name: \"participant_uniprotkb_ac\"\n Description: \"The UniProtKB accession of the interacting protein participant\"\n Unique Values: \"2232\"\n Name: \"participant_intact_ac\"\n Description: \"The IntAct accession of the interacting protein participant\"\n Unique Values: \"2232\"\n Name: \"participant_uniprotkb_id\"\n Description: \"The mnemonic identifier of the interacting protein participant in UniProtKB\"\n Unique Values: \"2232\"\n Name: \"participant_gene_symbol\"\n Description: \"The gene symbol of the interacting protein participant in UniProtKB\"\n Unique Values: \"2222\"\n Name: \"participant_taxid\"\n Description: \"The NCBI Taxonomy identifier of the interacting protein participant in UniProtKB\"\n Unique Values: \"19\"\n Name: \"experiments\"\n Description: \"Number of experiments performed to study the protein-protein binary interactions\"\n Unique Values: \"29\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/yeast_protein_binary_interactions.csv" }