{ "bcoid": "GLY_000721", "title": "Human Somatic Mutation Citations", "description": "The Human Somatic Mutation Citations contains details of the publication present in the dataset Human ...", "filename": "human_protein_citations_mutation_somatic.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "Somatic Mutation Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q92793-1...", "Frequent mut..." ], [ "Q96KG7-1...", "Mapping the ..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q92793-1", "Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder.", "Nature genetics", "2011 Aug 7", "Gui Y, Guo G, Huang Y, Hu X, Tang A, Gao S, Wu R, Chen C, Li X, Zhou L, He M, Li Z, Sun X, Jia W, Chen J, Yang S, Zhou F, Zhao X, Wan S, Ye R, Liang C, Liu Z, Huang P, Liu C, Jiang H, Wang Y, Zheng H, Sun L, Liu X, Jiang Z, Feng D, Chen J, Wu S, Zou J, Zhang Z, Yang R, Zhao J, Xu C, Yin W, Guan Z, Ye J, Zhang H, Li J, Kristiansen K, Nickerson ML, Theodorescu D, Li Y, Zhang X, Li S, Wang J, Yang H, Wang J, Cai Z", "protein_xref_pubmed", "21822268", "protein_xref_dbsnp", "rs1567259787" ], [ "Q96KG7-1", "Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing.", "Cell", "2012 Sep 14", "Imielinski M, Berger AH, Hammerman PS, Hernandez B, Pugh TJ, Hodis E, Cho J, Suh J, Capelletti M, Sivachenko A, Sougnez C, Auclair D, Lawrence MS, Stojanov P, Cibulskis K, Choi K, de Waal L, Sharifnia T, Brooks A, Greulich H, Banerji S, Zander T, Seidel D, Leenders F, Ansen S, Ludwig C, Engel-Riedel W, Stoelben E, Wolf J, Goparju C, Thompson K, Winckler W, Kwiatkowski D, Johnson BE, Janne PA, Miller VA, Pao W, Travis WD, Pass HI, Gabriel SB, Lander ES, Thomas RK, Garraway LA, Getz G, Meyerson M", "protein_xref_pubmed", "22980975", "protein_xref_dbsnp", "rs758348725" ], [ "P35372-1", "Blood-brain barrier permeability to morphine-6-glucuronide is markedly reduced compared with morphine.", "Drug metabolism and disposition: the biological fate of chemicals", "1997 Jun", "Wu D, Kang YS, Bickel U, Pardridge WM", "protein_xref_pubmed", "9193881", "protein_xref_dbsnp", "rs1799971" ], [ "P35222-1", "A gene marker panel covering the Wnt and the Ras-Raf-MEK-MAPK signalling pathways allows to detect gene mutations in 80% of early (UICC I) colon cancer stages in humans.", "Cancer epidemiology", "2009 Aug", "Scholtka B, Schneider M, Melcher R, Katzenberger T, Friedrich D, Berghof-Jager K, Scheppach W, Steinberg P", "protein_xref_pubmed", "19679059", "protein_xref_dbsnp", "rs121913413" ], [ "P35372-1", "Allelic expression imbalance of human mu opioid receptor (OPRM1) caused by variant A118G.", "The Journal of biological chemistry", "2005 Sep 23", "Zhang Y, Wang D, Johnson AD, Papp AC, Sadee W", "protein_xref_pubmed", "16046395", "protein_xref_dbsnp", "rs1799971" ], [ "Q8N8Z6-1", "Evolution and impact of subclonal mutations in chronic lymphocytic leukemia.", "Cell", "2013 Feb 14", "Landau DA, Carter SL, Stojanov P, McKenna A, Stevenson K, Lawrence MS, Sougnez C, Stewart C, Sivachenko A, Wang L, Wan Y, Zhang W, Shukla SA, Vartanov A, Fernandes SM, Saksena G, Cibulskis K, Tesar B, Gabriel S, Hacohen N, Meyerson M, Lander ES, Neuberg D, Brown JR, Getz G, Wu CJ", "protein_xref_pubmed", "23415222", "protein_xref_dbsnp", "rs146613111" ], [ "Q9BXU7-1", "The mutational landscape of head and neck squamous cell carcinoma.", "Science (New York, N.Y.)", "2011 Aug 26", "Stransky N, Egloff AM, Tward AD, Kostic AD, Cibulskis K, Sivachenko A, Kryukov GV, Lawrence MS, Sougnez C, McKenna A, Shefler E, Ramos AH, Stojanov P, Carter SL, Voet D, Cortes ML, Auclair D, Berger MF, Saksena G, Guiducci C, Onofrio RC, Parkin M, Romkes M, Weissfeld JL, Seethala RR, Wang L, Rangel-Escareno C, Fernandez-Lopez JC, Hidalgo-Miranda A, Melendez-Zajgla J, Winckler W, Ardlie K, Gabriel SB, Meyerson M, Lander ES, Getz G, Golub TR, Garraway LA, Grandis JR", "protein_xref_pubmed", "21798893", "protein_xref_dbsnp", "rs757939617" ], [ "P35222-1", "CTNNB1 mutational analysis of solid-pseudopapillary neoplasms of the pancreas using endoscopic ultrasound-guided fine-needle aspiration and next-generation deep sequencing.", "Journal of gastroenterology", "2015 Feb", "Kubota Y, Kawakami H, Natsuizaka M, Kawakubo K, Marukawa K, Kudo T, Abe Y, Kubo K, Kuwatani M, Hatanaka Y, Mitsuhashi T, Matsuno Y, Sakamoto N", "protein_xref_pubmed", "24700283", "protein_xref_dbsnp", "rs121913413" ], [ "Q9P2B2-1", "The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology.", "Cancer research", "2013 Jul 15", "Abaan OD, Polley EC, Davis SR, Zhu YJ, Bilke S, Walker RL, Pineda M, Gindin Y, Jiang Y, Reinhold WC, Holbeck SL, Simon RM, Doroshow JH, Pommier Y, Meltzer PS", "protein_xref_pubmed", "23856246", "protein_xref_dbsnp", "rs745646518" ], [ "P35222-1", "Frequent activation of the beta-catenin-Tcf signaling pathway in nonfamilial colorectal carcinomas with microsatellite instability.", "Genes, chromosomes & cancer", "2001 Jan", "Shitoh K, Furukawa T, Kojima M, Konishi F, Miyaki M, Tsukamoto T, Nagai H", "protein_xref_pubmed", "11107173", "protein_xref_dbsnp", "rs121913412" ], [ "P21802-1", "Activating somatic FGFR2 mutations in breast cancer.", "PloS one", "2013", "Reintjes N, Li Y, Becker A, Rohmann E, Schmutzler R, Wollnik B", "protein_xref_pubmed", "23527311", "protein_xref_dbsnp", "rs1589722765" ], [ "P68871-1", "Hb A-like sickle haemoglobin: Hb S-providence.", "British journal of haematology", "1988 Oct", "Gale RE, Blair NE, Huehns ER, Clegg JB", "protein_xref_pubmed", "3191036", "protein_xref_dbsnp", "rs33991993" ], [ "Q5T655-1", "Temporal dissection of tumorigenesis in primary cancers.", "Cancer discovery", "2011 Jul", "Durinck S, Ho C, Wang NJ, Liao W, Jakkula LR, Collisson EA, Pons J, Chan SW, Lam ET, Chu C, Park K, Hong SW, Hur JS, Huh N, Neuhaus IM, Yu SS, Grekin RC, Mauro TM, Cleaver JE, Kwok PY, LeBoit PE, Getz G, Cibulskis K, Aster JC, Huang H, Purdom E, Li J, Bolund L, Arron ST, Gray JW, Spellman PT, Cho RJ", "protein_xref_pubmed", "21984974", "protein_xref_dbsnp", "rs1554927514" ], [ "Q76N89-1", "The integrated landscape of driver genomic alterations in glioblastoma.", "Nature genetics", "2013 Oct", "Frattini V, Trifonov V, Chan JM, Castano A, Lia M, Abate F, Keir ST, Ji AX, Zoppoli P, Niola F, Danussi C, Dolgalev I, Porrati P, Pellegatta S, Heguy A, Gupta G, Pisapia DJ, Canoll P, Bruce JN, McLendon RE, Yan H, Aldape K, Finocchiaro G, Mikkelsen T, Prive GG, Bigner DD, Lasorella A, Rabadan R, Iavarone A", "protein_xref_pubmed", "23917401", "protein_xref_dbsnp", "rs953667034" ], [ "Q8WZ42-1", "Integrated molecular analysis of clear-cell renal cell carcinoma.", "Nature genetics", "2013 Aug", "Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, Shimamura T, Sato-Otsubo A, Nagae G, Suzuki H, Nagata Y, Yoshida K, Kon A, Suzuki Y, Chiba K, Tanaka H, Niida A, Fujimoto A, Tsunoda T, Morikawa T, Maeda D, Kume H, Sugano S, Fukayama M, Aburatani H, Sanada M, Miyano S, Homma Y, Ogawa S", "protein_xref_pubmed", "23797736", "protein_xref_dbsnp", "rs752659193" ], [ "P19397-1", "The integrated landscape of driver genomic alterations in glioblastoma.", "Nature genetics", "2013 Oct", "Frattini V, Trifonov V, Chan JM, Castano A, Lia M, Abate F, Keir ST, Ji AX, Zoppoli P, Niola F, Danussi C, Dolgalev I, Porrati P, Pellegatta S, Heguy A, Gupta G, Pisapia DJ, Canoll P, Bruce JN, McLendon RE, Yan H, Aldape K, Finocchiaro G, Mikkelsen T, Prive GG, Bigner DD, Lasorella A, Rabadan R, Iavarone A", "protein_xref_pubmed", "23917401", "protein_xref_dbsnp", "rs369006161" ], [ "P98160-1", "Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events.", "Genome research", "2012 Dec", "Liu J, Lee W, Jiang Z, Chen Z, Jhunjhunwala S, Haverty PM, Gnad F, Guan Y, Gilbert HN, Stinson J, Klijn C, Guillory J, Bhatt D, Vartanian S, Walter K, Chan J, Holcomb T, Dijkgraaf P, Johnson S, Koeman J, Minna JD, Gazdar AF, Stern HM, Hoeflich KP, Wu TD, Settleman J, de Sauvage FJ, Gentleman RC, Neve RM, Stokoe D, Modrusan Z, Seshagiri S, Shames DS, Zhang Z", "protein_xref_pubmed", "23033341", "protein_xref_dbsnp", "rs746499380" ], [ "P04637-1", "p53 mutation with frequent novel condons but not a mutator phenotype in BRCA1- and BRCA2-associated breast tumours.", "Oncogene", "1998 Oct 1", "Crook T, Brooks LA, Crossland S, Osin P, Barker KT, Waller J, Philp E, Smith PD, Yulug I, Peto J, Parker G, Allday MJ, Crompton MR, Gusterson BA", "protein_xref_pubmed", "9796697", "protein_xref_dbsnp", "rs1131691034" ], [ "P35222-1", "Altered expression and mutation of beta-catenin gene in gastric carcinomas and cell lines.", "International journal of cancer", "2001 Mar 20", "Woo DK, Kim HS, Lee HS, Kang YH, Yang HK, Kim WH", "protein_xref_pubmed", "11241321", "protein_xref_dbsnp", "rs121913412" ], [ "Q14247-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs1260435071" ], [ "P04637-1", "Cytology vs molecular analysis for the detection of head and neck squamous cell carcinoma in oesopharyngeal brush samples: a prospective study in 56 patients.", "British journal of cancer", "2003 Jun 2", "Temam S, Trassard M, Leroux G, Bosq J, Luboinski B, Lenoir G, Benard J, Janot F", "protein_xref_pubmed", "12771990", "protein_xref_dbsnp", "rs1057519986" ], [ "A8K7I4-1", "Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.", "Nature genetics", "2012 Sep", "Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R", "protein_xref_pubmed", "22842228", "protein_xref_dbsnp", "rs267598745" ], [ "Q8NGP0-1", "Integrated molecular analysis of clear-cell renal cell carcinoma.", "Nature genetics", "2013 Aug", "Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, Shimamura T, Sato-Otsubo A, Nagae G, Suzuki H, Nagata Y, Yoshida K, Kon A, Suzuki Y, Chiba K, Tanaka H, Niida A, Fujimoto A, Tsunoda T, Morikawa T, Maeda D, Kume H, Sugano S, Fukayama M, Aburatani H, Sanada M, Miyano S, Homma Y, Ogawa S", "protein_xref_pubmed", "23797736", "protein_xref_dbsnp", "rs1337780961" ], [ "P04637-1", "Low frequency of p53 gene mutations in breast cancers of Japanese-American women.", "Nutrition and cancer", "2001", "Buzin CH, Tang SH, Cunningham JM, Shibata A, Ross RK, Hartmann A, Blaszyk H, Kovach JS", "protein_xref_pubmed", "11588905", "protein_xref_dbsnp", "rs1057519986" ], [ "O75056-1", "Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.", "Nature genetics", "2012 Sep", "Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R", "protein_xref_pubmed", "22842228", "protein_xref_dbsnp", "rs763350109" ], [ "P35222-1", "Distinct sets of gene alterations in endometrial carcinoma implicate alternate modes of tumorigenesis.", "Cancer", "2002 May 1", "Koul A, Willen R, Bendahl PO, Nilbert M, Borg A", "protein_xref_pubmed", "12015762", "protein_xref_dbsnp", "rs121913412" ], [ "P35222-1", "Desmoid tumor with ossification in chest wall: possible involvement of BAMBI promoter hypermethylation in metaplastic bone formation.", "Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research", "2005 Aug", "Kitazawa S, Kitazawa R, Obayashi C, Yamamoto T", "protein_xref_pubmed", "16007344", "protein_xref_dbsnp", "rs121913412" ], [ "P35542-1", "Frequent pathway mutations of splicing machinery in myelodysplasia.", "Nature", "2011 Sep 11", "Yoshida K, Sanada M, Shiraishi Y, Nowak D, Nagata Y, Yamamoto R, Sato Y, Sato-Otsubo A, Kon A, Nagasaki M, Chalkidis G, Suzuki Y, Shiosaka M, Kawahata R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Ishiyama K, Mori H, Nolte F, Hofmann WK, Miyawaki S, Sugano S, Haferlach C, Koeffler HP, Shih LY, Haferlach T, Chiba S, Nakauchi H, Miyano S, Ogawa S", "protein_xref_pubmed", "21909114", "protein_xref_dbsnp", "rs148445361" ], [ "Q14002-1", "Melanoma genome sequencing reveals frequent PREX2 mutations.", "Nature", "2012 May 9", "Berger MF, Hodis E, Heffernan TP, Deribe YL, Lawrence MS, Protopopov A, Ivanova E, Watson IR, Nickerson E, Ghosh P, Zhang H, Zeid R, Ren X, Cibulskis K, Sivachenko AY, Wagle N, Sucker A, Sougnez C, Onofrio R, Ambrogio L, Auclair D, Fennell T, Carter SL, Drier Y, Stojanov P, Singer MA, Voet D, Jing R, Saksena G, Barretina J, Ramos AH, Pugh TJ, Stransky N, Parkin M, Winckler W, Mahan S, Ardlie K, Baldwin J, Wargo J, Schadendorf D, Meyerson M, Gabriel SB, Golub TR, Wagner SN, Lander ES, Getz G, Chin L, Garraway LA", "protein_xref_pubmed", "22622578", "protein_xref_dbsnp", "rs782029246" ], [ "Q6UWX4-1", "Temporal dissection of tumorigenesis in primary cancers.", "Cancer discovery", "2011 Jul", "Durinck S, Ho C, Wang NJ, Liao W, Jakkula LR, Collisson EA, Pons J, Chan SW, Lam ET, Chu C, Park K, Hong SW, Hur JS, Huh N, Neuhaus IM, Yu SS, Grekin RC, Mauro TM, Cleaver JE, Kwok PY, LeBoit PE, Getz G, Cibulskis K, Aster JC, Huang H, Purdom E, Li J, Bolund L, Arron ST, Gray JW, Spellman PT, Cho RJ", "protein_xref_pubmed", "21984974", "protein_xref_dbsnp", "rs1448981867" ], [ "Q13315-1", "Oligonucleotide microarrays demonstrate the highest frequency of ATM mutations in the mantle cell subtype of lymphoma.", "Proceedings of the National Academy of Sciences of the United States of America", "2003 Apr 29", "Fang NY, Greiner TC, Weisenburger DD, Chan WC, Vose JM, Smith LM, Armitage JO, Mayer RA, Pike BL, Collins FS, Hacia JG", "protein_xref_pubmed", "12697903", "protein_xref_dbsnp", "rs2227922" ], [ "Q3LI81-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs1282164345" ], [ "Q8N158-1", "Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity.", "Nature genetics", "2013 May", "Dulak AM, Stojanov P, Peng S, Lawrence MS, Fox C, Stewart C, Bandla S, Imamura Y, Schumacher SE, Shefler E, McKenna A, Carter SL, Cibulskis K, Sivachenko A, Saksena G, Voet D, Ramos AH, Auclair D, Thompson K, Sougnez C, Onofrio RC, Guiducci C, Beroukhim R, Zhou Z, Lin L, Lin J, Reddy R, Chang A, Landrenau R, Pennathur A, Ogino S, Luketich JD, Golub TR, Gabriel SB, Lander ES, Beer DG, Godfrey TE, Getz G, Bass AJ", "protein_xref_pubmed", "23525077", "protein_xref_dbsnp", "rs1333017606" ], [ "Q9H2Y9-1", "Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.", "Nature genetics", "2012 Sep", "Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R", "protein_xref_pubmed", "22842228", "protein_xref_dbsnp", "rs200393256" ], [ "Q86X19-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs372401879" ], [ "Q9BYF1-1", "Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.", "Nature genetics", "2012 Sep", "Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R", "protein_xref_pubmed", "22842228", "protein_xref_dbsnp", "rs373153165" ], [ "Q6NSJ5-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs764336589" ], [ "Q14643-1", "Melanoma genome sequencing reveals frequent PREX2 mutations.", "Nature", "2012 May 9", "Berger MF, Hodis E, Heffernan TP, Deribe YL, Lawrence MS, Protopopov A, Ivanova E, Watson IR, Nickerson E, Ghosh P, Zhang H, Zeid R, Ren X, Cibulskis K, Sivachenko AY, Wagle N, Sucker A, Sougnez C, Onofrio R, Ambrogio L, Auclair D, Fennell T, Carter SL, Drier Y, Stojanov P, Singer MA, Voet D, Jing R, Saksena G, Barretina J, Ramos AH, Pugh TJ, Stransky N, Parkin M, Winckler W, Mahan S, Ardlie K, Baldwin J, Wargo J, Schadendorf D, Meyerson M, Gabriel SB, Golub TR, Wagner SN, Lander ES, Getz G, Chin L, Garraway LA", "protein_xref_pubmed", "22622578", "protein_xref_dbsnp", "rs771272478" ], [ "Q8WWQ8-1", "Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing.", "Cell", "2012 Sep 14", "Imielinski M, Berger AH, Hammerman PS, Hernandez B, Pugh TJ, Hodis E, Cho J, Suh J, Capelletti M, Sivachenko A, Sougnez C, Auclair D, Lawrence MS, Stojanov P, Cibulskis K, Choi K, de Waal L, Sharifnia T, Brooks A, Greulich H, Banerji S, Zander T, Seidel D, Leenders F, Ansen S, Ludwig C, Engel-Riedel W, Stoelben E, Wolf J, Goparju C, Thompson K, Winckler W, Kwiatkowski D, Johnson BE, Janne PA, Miller VA, Pao W, Travis WD, Pass HI, Gabriel SB, Lander ES, Thomas RK, Garraway LA, Getz G, Meyerson M", "protein_xref_pubmed", "22980975", "protein_xref_dbsnp", "rs139082297" ], [ "P04637-1", "Aberrations of the p53 tumor suppressor gene in human non-small cell carcinomas of the lung.", "Cancer research", "1992 Sep 1", "Kishimoto Y, Murakami Y, Shiraishi M, Hayashi K, Sekiya T", "protein_xref_pubmed", "1324794", "protein_xref_dbsnp", "rs28934571" ], [ "P35222-1", "Genetic alterations associated with hepatocellular carcinomas define distinct pathways of hepatocarcinogenesis.", "Gastroenterology", "2001 Jun", "Laurent-Puig P, Legoix P, Bluteau O, Belghiti J, Franco D, Binot F, Monges G, Thomas G, Bioulac-Sage P, Zucman-Rossi J", "protein_xref_pubmed", "11375957", "protein_xref_dbsnp", "rs121913412" ], [ "P35222-1", "Genetic alterations associated with hepatocellular carcinomas define distinct pathways of hepatocarcinogenesis.", "Gastroenterology", "2001 Jun", "Laurent-Puig P, Legoix P, Bluteau O, Belghiti J, Franco D, Binot F, Monges G, Thomas G, Bioulac-Sage P, Zucman-Rossi J", "protein_xref_pubmed", "11375957", "protein_xref_dbsnp", "rs121913413" ], [ "Q9NRJ4-1", "Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation.", "Nature genetics", "2013 Dec", "Guo G, Sun X, Chen C, Wu S, Huang P, Li Z, Dean M, Huang Y, Jia W, Zhou Q, Tang A, Yang Z, Li X, Song P, Zhao X, Ye R, Zhang S, Lin Z, Qi M, Wan S, Xie L, Fan F, Nickerson ML, Zou X, Hu X, Xing L, Lv Z, Mei H, Gao S, Liang C, Gao Z, Lu J, Yu Y, Liu C, Li L, Fang X, Jiang Z, Yang J, Li C, Zhao X, Chen J, Zhang F, Lai Y, Lin Z, Zhou F, Chen H, Chan HC, Tsang S, Theodorescu D, Li Y, Zhang X, Wang J, Yang H, Gui Y, Wang J, Cai Z", "protein_xref_pubmed", "24121792", "protein_xref_dbsnp", "rs1240069892" ], [ "P22309-1", "Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing.", "Cell", "2012 Sep 14", "Imielinski M, Berger AH, Hammerman PS, Hernandez B, Pugh TJ, Hodis E, Cho J, Suh J, Capelletti M, Sivachenko A, Sougnez C, Auclair D, Lawrence MS, Stojanov P, Cibulskis K, Choi K, de Waal L, Sharifnia T, Brooks A, Greulich H, Banerji S, Zander T, Seidel D, Leenders F, Ansen S, Ludwig C, Engel-Riedel W, Stoelben E, Wolf J, Goparju C, Thompson K, Winckler W, Kwiatkowski D, Johnson BE, Janne PA, Miller VA, Pao W, Travis WD, Pass HI, Gabriel SB, Lander ES, Thomas RK, Garraway LA, Getz G, Meyerson M", "protein_xref_pubmed", "22980975", "protein_xref_dbsnp", "rs751579554" ], [ "Q9Y6D5-1", "Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity.", "Nature genetics", "2013 May", "Dulak AM, Stojanov P, Peng S, Lawrence MS, Fox C, Stewart C, Bandla S, Imamura Y, Schumacher SE, Shefler E, McKenna A, Carter SL, Cibulskis K, Sivachenko A, Saksena G, Voet D, Ramos AH, Auclair D, Thompson K, Sougnez C, Onofrio RC, Guiducci C, Beroukhim R, Zhou Z, Lin L, Lin J, Reddy R, Chang A, Landrenau R, Pennathur A, Ogino S, Luketich JD, Golub TR, Gabriel SB, Lander ES, Beer DG, Godfrey TE, Getz G, Bass AJ", "protein_xref_pubmed", "23525077", "protein_xref_dbsnp", "rs1430999905" ], [ "Q5ZPR3-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs541095307" ], [ "P35222-1", "Nuclear beta-catenin expression in basal cell adenomas of salivary gland.", "Journal of oral pathology & medicine : official publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology", "2011 Jul", "Kawahara A, Harada H, Abe H, Yamaguchi T, Taira T, Nakashima K, Mihashi H, Akiba J, Kage M", "protein_xref_pubmed", "21323741", "protein_xref_dbsnp", "rs121913412" ], [ "P04637-1", "p53 mutations and aflatoxin B1 exposure in hepatocellular carcinoma patients from Thailand.", "International journal of cancer", "1993 Jan 2", "Hollstein MC, Wild CP, Bleicher F, Chutimataewin S, Harris CC, Srivatanakul P, Montesano R", "protein_xref_pubmed", "8380058", "protein_xref_dbsnp", "rs28934571" ], [ "Q8NFX7-1", "Dissecting the genomic complexity underlying medulloblastoma.", "Nature", "2012 Aug 2", "Jones DT, Jager N, Kool M, Zichner T, Hutter B, Sultan M, Cho YJ, Pugh TJ, Hovestadt V, Stutz AM, Rausch T, Warnatz HJ, Ryzhova M, Bender S, Sturm D, Pleier S, Cin H, Pfaff E, Sieber L, Wittmann A, Remke M, Witt H, Hutter S, Tzaridis T, Weischenfeldt J, Raeder B, Avci M, Amstislavskiy V, Zapatka M, Weber UD, Wang Q, Lasitschka B, Bartholomae CC, Schmidt M, von Kalle C, Ast V, Lawerenz C, Eils J, Kabbe R, Benes V, van Sluis P, Koster J, Volckmann R, Shih D, Betts MJ, Russell RB, Coco S, Tonini GP, Schuller U, Hans V, Graf N, Kim YJ, Monoranu C, Roggendorf W, Unterberg A, Herold-Mende C, Milde T, Kulozik AE, von Deimling A, Witt O, Maass E, Rossler J, Ebinger M, Schuhmann MU, Fruhwald MC, Hasselblatt M, Jabado N, Rutkowski S, von Bueren AO, Williamson D, Clifford SC, McCabe MG, Collins VP, Wolf S, Wiemann S, Lehrach H, Brors B, Scheurlen W, Felsberg J, Reifenberger G, Northcott PA, Taylor MD, Meyerson M, Pomeroy SL, Yaspo ML, Korbel JO, Korshunov A, Eils R, Pfister SM, Lichter P", "protein_xref_pubmed", "22832583", "protein_xref_dbsnp", "rs772963568" ], [ "P36980-1", "Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.", "Nature genetics", "2012 Sep", "Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R", "protein_xref_pubmed", "22842228", "protein_xref_dbsnp", "rs867746464" ], [ "P31939-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs751418575" ], [ "O75445-1", "Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.", "Nature genetics", "2012 Sep", "Krauthammer M, Kong Y, Ha BH, Evans P, Bacchiocchi A, McCusker JP, Cheng E, Davis MJ, Goh G, Choi M, Ariyan S, Narayan D, Dutton-Regester K, Capatana A, Holman EC, Bosenberg M, Sznol M, Kluger HM, Brash DE, Stern DF, Materin MA, Lo RS, Mane S, Ma S, Kidd KK, Hayward NK, Lifton RP, Schlessinger J, Boggon TJ, Halaban R", "protein_xref_pubmed", "22842228", "protein_xref_dbsnp", "rs202247801" ], [ "Q9Y566-1", "The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology.", "Cancer research", "2013 Jul 15", "Abaan OD, Polley EC, Davis SR, Zhu YJ, Bilke S, Walker RL, Pineda M, Gindin Y, Jiang Y, Reinhold WC, Holbeck SL, Simon RM, Doroshow JH, Pommier Y, Meltzer PS", "protein_xref_pubmed", "23856246", "protein_xref_dbsnp", "rs768707641" ], [ "P35222-1", "Mutational analysis of beta-catenin gene in Japanese ovarian carcinomas: frequent mutations in endometrioid carcinomas.", "Japanese journal of cancer research : Gann", "1999 May", "Sagae S, Kobayashi K, Nishioka Y, Sugimura M, Ishioka S, Nagata M, Terasawa K, Tokino T, Kudo R", "protein_xref_pubmed", "10391090", "protein_xref_dbsnp", "rs121913413" ], [ "P35222-1", "Mutational analysis of beta-catenin gene in Japanese ovarian carcinomas: frequent mutations in endometrioid carcinomas.", "Japanese journal of cancer research : Gann", "1999 May", "Sagae S, Kobayashi K, Nishioka Y, Sugimura M, Ishioka S, Nagata M, Terasawa K, Tokino T, Kudo R", "protein_xref_pubmed", "10391090", "protein_xref_dbsnp", "rs121913412" ], [ "P00519-1", "Diverse somatic mutation patterns and pathway alterations in human cancers.", "Nature", "2010 Aug 12", "Kan Z, Jaiswal BS, Stinson J, Janakiraman V, Bhatt D, Stern HM, Yue P, Haverty PM, Bourgon R, Zheng J, Moorhead M, Chaudhuri S, Tomsho LP, Peters BA, Pujara K, Cordes S, Davis DP, Carlton VE, Yuan W, Li L, Wang W, Eigenbrot C, Kaminker JS, Eberhard DA, Waring P, Schuster SC, Modrusan Z, Zhang Z, Stokoe D, de Sauvage FJ, Faham M, Seshagiri S", "protein_xref_pubmed", "20668451", "protein_xref_dbsnp", "rs775748939" ], [ "Q13023-1", "Exome sequencing identifies GRIN2A as frequently mutated in melanoma.", "Nature genetics", "2011 May", "Wei X, Walia V, Lin JC, Teer JK, Prickett TD, Gartner J, Davis S, Stemke-Hale K, Davies MA, Gershenwald JE, Robinson W, Robinson S, Rosenberg SA, Samuels Y", "protein_xref_pubmed", "21499247", "protein_xref_dbsnp", "rs139779310" ], [ "P14410-1", "MAP kinase pathway alterations in BRAF-mutant melanoma patients with acquired resistance to combined RAF/MEK inhibition.", "Cancer discovery", "2014 Jan", "Wagle N, Van Allen EM, Treacy DJ, Frederick DT, Cooper ZA, Taylor-Weiner A, Rosenberg M, Goetz EM, Sullivan RJ, Farlow DN, Friedrich DC, Anderka K, Perrin D, Johannessen CM, McKenna A, Cibulskis K, Kryukov G, Hodis E, Lawrence DP, Fisher S, Getz G, Gabriel SB, Carter SL, Flaherty KT, Wargo JA, Garraway LA", "protein_xref_pubmed", "24265154", "protein_xref_dbsnp", "rs1324818194" ], [ "O75445-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs148605973" ], [ "P04637-1", "Sensitive detection of p53 gene mutations in esophageal endoscopic biopsy specimens by cell sorting combined with polymerase chain reaction single-strand conformation polymorphism analysis.", "Japanese journal of cancer research : Gann", "1992 Dec", "Maesawa C, Tamura G, Suzuki Y, Ishida K, Saito K, Satodate R", "protein_xref_pubmed", "1483940", "protein_xref_dbsnp", "rs1057519986" ], [ "P04637-1", "A germ line mutation in exon 5 of the p53 gene in an extended cancer family.", "Cancer research", "1991 Dec 1", "Law JC, Strong LC, Chidambaram A, Ferrell RE", "protein_xref_pubmed", "1933902", "protein_xref_dbsnp", "rs28934873" ], [ "P11137-1", "Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity.", "Nature genetics", "2013 May", "Dulak AM, Stojanov P, Peng S, Lawrence MS, Fox C, Stewart C, Bandla S, Imamura Y, Schumacher SE, Shefler E, McKenna A, Carter SL, Cibulskis K, Sivachenko A, Saksena G, Voet D, Ramos AH, Auclair D, Thompson K, Sougnez C, Onofrio RC, Guiducci C, Beroukhim R, Zhou Z, Lin L, Lin J, Reddy R, Chang A, Landrenau R, Pennathur A, Ogino S, Luketich JD, Golub TR, Gabriel SB, Lander ES, Beer DG, Godfrey TE, Getz G, Bass AJ", "protein_xref_pubmed", "23525077", "protein_xref_dbsnp", "rs770938168" ], [ "P35222-1", "Increased cyclin D1 expression in cancer of the ampulla of Vater: relevance to nuclear beta catenin accumulation and k-ras gene mutation.", "Molecular pathology : MP", "2003 Dec", "Yamazaki K, Hanami K, Nagao T, Asoh A, Sugano I, Ishida Y", "protein_xref_pubmed", "14645696", "protein_xref_dbsnp", "rs121913412" ], [ "P06731-1", "Exome sequencing identifies GRIN2A as frequently mutated in melanoma.", "Nature genetics", "2011 May", "Wei X, Walia V, Lin JC, Teer JK, Prickett TD, Gartner J, Davis S, Stemke-Hale K, Davies MA, Gershenwald JE, Robinson W, Robinson S, Rosenberg SA, Samuels Y", "protein_xref_pubmed", "21499247", "protein_xref_dbsnp", "rs140159293" ], [ "Q8IYW2-1", "Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity.", "Nature genetics", "2013 May", "Dulak AM, Stojanov P, Peng S, Lawrence MS, Fox C, Stewart C, Bandla S, Imamura Y, Schumacher SE, Shefler E, McKenna A, Carter SL, Cibulskis K, Sivachenko A, Saksena G, Voet D, Ramos AH, Auclair D, Thompson K, Sougnez C, Onofrio RC, Guiducci C, Beroukhim R, Zhou Z, Lin L, Lin J, Reddy R, Chang A, Landrenau R, Pennathur A, Ogino S, Luketich JD, Golub TR, Gabriel SB, Lander ES, Beer DG, Godfrey TE, Getz G, Bass AJ", "protein_xref_pubmed", "23525077", "protein_xref_dbsnp", "rs1231186455" ], [ "P35222-1", "High frequency of beta-catenin heterozygous mutations in extra-abdominal fibromatosis: a potential molecular tool for disease management.", "British journal of cancer", "2010 Mar 16", "Domont J, Salas S, Lacroix L, Brouste V, Saulnier P, Terrier P, Ranchere D, Neuville A, Leroux A, Guillou L, Sciot R, Collin F, Dufresne A, Blay JY, Le Cesne A, Coindre JM, Bonvalot S, Benard J", "protein_xref_pubmed", "20197769", "protein_xref_dbsnp", "rs121913412" ], [ "P04637-1", "TP53 mutation and haplotype analysis of two large African American families.", "Human mutation", "1999", "Hung J, Mims B, Lozano G, Strong L, Harvey C, Chen TT, Stastny V, Tomlinson G", "protein_xref_pubmed", "10477429", "protein_xref_dbsnp", "rs28934873" ], [ "P35222-1", "Cytoplasmic/nuclear expression without mutation of exon 3 of the beta-catenin gene is frequent in the development of the neoplasm of the uterine cervix.", "Gynecologic oncology", "2001 Sep", "Shinohara A, Yokoyama Y, Wan X, Takahashi Y, Mori Y, Takami T, Shimokawa K, Tamaya T", "protein_xref_pubmed", "11520139", "protein_xref_dbsnp", "rs121913413" ], [ "P04637-1", "The incidence of p53 mutations increases with progression of head and neck cancer.", "Cancer research", "1993-10-01", "Boyle J O, Hakim J, Koch W, van der Riet P, Hruban R H, Roa R A, Correo R, Eby Y J, Ruppert J M, Sidransky D", "protein_xref_pubmed", "8402617", "protein_xref_dbsnp", "rs730882027" ], [ "P04637-1", "Polymorphisms in XPD and TP53 and mutation in human lung cancer.", "Carcinogenesis", "2005 Mar", "Mechanic LE, Marrogi AJ, Welsh JA, Bowman ED, Khan MA, Enewold L, Zheng YL, Chanock S, Shields PG, Harris CC", "protein_xref_pubmed", "15564288", "protein_xref_dbsnp", "rs28934571" ], [ "Q9P0L9-1", "Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion.", "Nature genetics", "2011 Sep 4", "Bass AJ, Lawrence MS, Brace LE, Ramos AH, Drier Y, Cibulskis K, Sougnez C, Voet D, Saksena G, Sivachenko A, Jing R, Parkin M, Pugh T, Verhaak RG, Stransky N, Boutin AT, Barretina J, Solit DB, Vakiani E, Shao W, Mishina Y, Warmuth M, Jimenez J, Chiang DY, Signoretti S, Kaelin WG Jr, Spardy N, Hahn WC, Hoshida Y, Ogino S, DePinho RA, Chin L, Garraway LA, Fuchs CS, Baselga J, Tabernero J, Gabriel S, Lander ES, Getz G, Meyerson M", "protein_xref_pubmed", "21892161", "protein_xref_dbsnp", "rs746954146" ], [ "Q7Z4T8-1", "Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing.", "Cell", "2012 Sep 14", "Imielinski M, Berger AH, Hammerman PS, Hernandez B, Pugh TJ, Hodis E, Cho J, Suh J, Capelletti M, Sivachenko A, Sougnez C, Auclair D, Lawrence MS, Stojanov P, Cibulskis K, Choi K, de Waal L, Sharifnia T, Brooks A, Greulich H, Banerji S, Zander T, Seidel D, Leenders F, Ansen S, Ludwig C, Engel-Riedel W, Stoelben E, Wolf J, Goparju C, Thompson K, Winckler W, Kwiatkowski D, Johnson BE, Janne PA, Miller VA, Pao W, Travis WD, Pass HI, Gabriel SB, Lander ES, Thomas RK, Garraway LA, Getz G, Meyerson M", "protein_xref_pubmed", "22980975", "protein_xref_dbsnp", "rs1554404601" ], [ "P35637-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs186547381" ], [ "Q15027-1", "The exomes of the NCI-60 panel: a genomic resource for cancer biology and systems pharmacology.", "Cancer research", "2013 Jul 15", "Abaan OD, Polley EC, Davis SR, Zhu YJ, Bilke S, Walker RL, Pineda M, Gindin Y, Jiang Y, Reinhold WC, Holbeck SL, Simon RM, Doroshow JH, Pommier Y, Meltzer PS", "protein_xref_pubmed", "23856246", "protein_xref_dbsnp", "rs1417233389" ], [ "P04637-1", "Clones of normal keratinocytes and a variety of simultaneously present epidermal neoplastic lesions contain a multitude of p53 gene mutations in a xeroderma pigmentosum patient.", "Cancer research", "1998 Jun 1", "Williams C, Ponten F, Ahmadian A, Ren ZP, Ling G, Rollman O, Ljung A, Jaspers NG, Uhlen M, Lundeberg J, Ponten J", "protein_xref_pubmed", "9622088", "protein_xref_dbsnp", "rs1555526214" ], [ "P05154-1", "Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer.", "Nature genetics", "2012 Oct", "Rudin CM, Durinck S, Stawiski EW, Poirier JT, Modrusan Z, Shames DS, Bergbower EA, Guan Y, Shin J, Guillory J, Rivers CS, Foo CK, Bhatt D, Stinson J, Gnad F, Haverty PM, Gentleman R, Chaudhuri S, Janakiraman V, Jaiswal BS, Parikh C, Yuan W, Zhang Z, Koeppen H, Wu TD, Stern HM, Yauch RL, Huffman KE, Paskulin DD, Illei PB, Varella-Garcia M, Gazdar AF, de Sauvage FJ, Bourgon R, Minna JD, Brock MV, Seshagiri S", "protein_xref_pubmed", "22941189", "protein_xref_dbsnp", "rs750522516" ], [ "P04637-1", "p53 gene mutation and protein accumulation during neoplastic progression in Barrett's esophagus.", "Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc", "2001 May", "Bian YS, Osterheld MC, Bosman FT, Benhattar J, Fontolliet C", "protein_xref_pubmed", "11353048", "protein_xref_dbsnp", "rs587782329" ], [ "P53992-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs147121844" ], [ "P00488-1", "Recurrent R-spondin fusions in colon cancer.", "Nature", "2012 Aug 30", "Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ", "protein_xref_pubmed", "22895193", "protein_xref_dbsnp", "rs201444282" ], [ "Q9BZE4-1", "Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity.", "Nature genetics", "2013 May", "Dulak AM, Stojanov P, Peng S, Lawrence MS, Fox C, Stewart C, Bandla S, Imamura Y, Schumacher SE, Shefler E, McKenna A, Carter SL, Cibulskis K, Sivachenko A, Saksena G, Voet D, Ramos AH, Auclair D, Thompson K, Sougnez C, Onofrio RC, Guiducci C, Beroukhim R, Zhou Z, Lin L, Lin J, Reddy R, Chang A, Landrenau R, Pennathur A, Ogino S, Luketich JD, Golub TR, Gabriel SB, Lander ES, Beer DG, Godfrey TE, Getz G, Bass AJ", "protein_xref_pubmed", "23525077", "protein_xref_dbsnp", "rs201965992" ], [ "Q9H792-1", "Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation.", "Nature genetics", "2013 Dec", "Guo G, Sun X, Chen C, Wu S, Huang P, Li Z, Dean M, Huang Y, Jia W, Zhou Q, Tang A, Yang Z, Li X, Song P, Zhao X, Ye R, Zhang S, Lin Z, Qi M, Wan S, Xie L, Fan F, Nickerson ML, Zou X, Hu X, Xing L, Lv Z, Mei H, Gao S, Liang C, Gao Z, Lu J, Yu Y, Liu C, Li L, Fang X, Jiang Z, Yang J, Li C, Zhao X, Chen J, Zhang F, Lai Y, Lin Z, Zhou F, Chen H, Chan HC, Tsang S, Theodorescu D, Li Y, Zhang X, Wang J, Yang H, Gui Y, Wang J, Cai Z", "protein_xref_pubmed", "24121792", "protein_xref_dbsnp", "rs757719535" ], [ "P04637-1", "Frequent detection of ras and p53 mutations in brush cytology samples from lung cancer patients by a restriction fragment length polymorphism-based `enriched PCR` technique.", "Clinical cancer research : an official journal of the American Association for Cancer Research", "1998 Feb", "Behn M, Qun S, Pankow W, Havemann K, Schuermann M", "protein_xref_pubmed", "9516924", "protein_xref_dbsnp", "rs28934571" ], [ "Q14CN2-1", "Integrated analysis of somatic mutations and focal copy-number changes identifies key genes and pathways in hepatocellular carcinoma.", "Nature genetics", "2012 May 6", "Guichard C, Amaddeo G, Imbeaud S, Ladeiro Y, Pelletier L, Maad IB, Calderaro J, Bioulac-Sage P, Letexier M, Degos F, Clement B, Balabaud C, Chevet E, Laurent A, Couchy G, Letouze E, Calvo F, Zucman-Rossi J", "protein_xref_pubmed", "22561517", "protein_xref_dbsnp", "rs775921171" ], [ "Q9UBS9-1", "High prevalence of MAP2K1 mutations in variant and IGHV4-34-expressing hairy-cell leukemias.", "Nature genetics", "2014 Jan", "Waterfall JJ, Arons E, Walker RL, Pineda M, Roth L, Killian JK, Abaan OD, Davis SR, Kreitman RJ, Meltzer PS", "protein_xref_pubmed", "24241536", "protein_xref_dbsnp", "rs1447767028" ] ] }, "readme": "Name\n - Human Somatic Mutation Citations\n\nVersion\n - v-2.3.1\n\nCreated on\n - \n\nModified on\n - \n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human Somatic Mutation Citations contains details of the publication present in the dataset Human Somatic Mutation https://data.glygen.org/GLY_000462.\n\nDescription Domain\n Keywords\n - Somatic\n - Mutation\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_mutation_somatic.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/human_protein_mutation_somatic.csv\n Output Subdomain\n Name: human_protein_citations_mutation_somatic.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/human_protein_citations_mutation_somatic.csv\n Name: human_protein_citations_mutation_somatic.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/human_protein_citations_mutation_somatic.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"679\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"437\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"140\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"349\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"437\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"437\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"786\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/human_protein_citations_mutation_somatic.csv" }