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O-GlcNAcylation and phosphorylation at the murine synapse.", "Molecular & cellular proteomics : MCP", "2012 Aug", "Trinidad JC, Barkan DT, Gulledge BF, Thalhammer A, Sali A, Schoepfer R, Burlingame AL", "protein_xref_pubmed", "22645316", "protein_xref_oglcnac_atlas", "B2RQC6", "G49108TO" ], [ "B2RSH2-1", "Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse.", "Molecular & cellular proteomics : MCP", "2012 Aug", "Trinidad JC, Barkan DT, Gulledge BF, Thalhammer A, Sali A, Schoepfer R, Burlingame AL", "protein_xref_pubmed", "22645316", "protein_xref_oglcnac_atlas", "B2RSH2", "G49108TO" ], [ "B2RUR8-1", "AANL (Agrocybe aegerita lectin 2) is a new facile tool to probe for O-GlcNAcylation.", "Glycobiology", "2018 Jun 1", "Liu W, Han G, Yin Y, Jiang S, Yu G, Yang Q, Yu W, Ye X, Su Y, Yang Y, Hart GW, Sun H", "protein_xref_pubmed", "29562282", "protein_xref_oglcnac_atlas", "B2RUR8", "G49108TO" ], [ "B2RWS6-1", "Quantitative Profiling of 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"Age-related loss of neural stem cell O-GlcNAc promotes a glial fate switch through STAT3 activation.", "Proceedings of the National Academy of Sciences of the United States of America", "2020 Sep 8", "White CW 3rd, Fan X, Maynard JC, Wheatley EG, Bieri G, Couthouis J, Burlingame AL, Villeda SA", "protein_xref_pubmed", "32848054", "protein_xref_oglcnac_atlas", "B9EJA2", "G49108TO" ], [ "D0G895-1", "Quantitative Profiling of Protein O-GlcNAcylation Sites by an Isotope-Tagged Cleavable Linker.", "ACS chemical biology", "2018 Aug 17", "Qin K, Zhu Y, Qin W, Gao J, Shao X, Wang YL, Zhou W, Wang C, Chen X", "protein_xref_pubmed", "30059200", "protein_xref_oglcnac_atlas", "D0G895", "G49108TO" ], [ "D3YVF0-1", "Quantitative Profiling of Protein O-GlcNAcylation Sites by an Isotope-Tagged Cleavable Linker.", "ACS chemical biology", "2018 Aug 17", "Qin K, Zhu Y, Qin W, Gao J, Shao X, Wang YL, Zhou W, Wang C, Chen X", "protein_xref_pubmed", "30059200", "protein_xref_oglcnac_atlas", "D3YVF0", 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Lv P, Du Y, Huang R, Han M, Cheng B, Liu Y, Zhou W, Wang C, Chen X", "protein_xref_pubmed", "29237092", "protein_xref_oglcnac_atlas", "D4QGC2", "G49108TO" ], [ "E9PUL3-1", "Novel Antibodies for the Simple and Efficient Enrichment of Native O-GlcNAc Modified Peptides.", "Molecular & cellular proteomics : MCP", "2021", "Burt RA, Dejanovic B, Peckham HJ, Lee KA, Li X, Ounadjela JR, Rao A, Malaker SA, Carr SA, Myers SA", "protein_xref_pubmed", "34678516", "protein_xref_oglcnac_atlas", "E9PUL3", "G49108TO" ], [ "E9PUL5-1", "Age-related loss of neural stem cell O-GlcNAc promotes a glial fate switch through STAT3 activation.", "Proceedings of the National Academy of Sciences of the United States of America", "2020 Sep 8", "White CW 3rd, Fan X, Maynard JC, Wheatley EG, Bieri G, Couthouis J, Burlingame AL, Villeda SA", "protein_xref_pubmed", "32848054", "protein_xref_oglcnac_atlas", "E9PUL5", "G49108TO" ], [ "E9PUL5-1", "Novel Antibodies for the Simple and Efficient Enrichment of Native O-GlcNAc Modified Peptides.", "Molecular & cellular proteomics : MCP", "2021", "Burt RA, Dejanovic B, Peckham HJ, Lee KA, Li X, Ounadjela JR, Rao A, Malaker SA, Carr SA, Myers SA", "protein_xref_pubmed", "34678516", "protein_xref_oglcnac_atlas", "E9PUL5", "G49108TO" ], [ "E9PUQ8-1", "Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse.", "Molecular & cellular proteomics : MCP", "2012 Aug", "Trinidad JC, Barkan DT, Gulledge BF, Thalhammer A, Sali A, Schoepfer R, Burlingame AL", "protein_xref_pubmed", "22645316", "protein_xref_oglcnac_atlas", "E9PUQ8", "G49108TO" ], [ "E9PUR0-1", "Quantitative Profiling of Protein O-GlcNAcylation Sites by an Isotope-Tagged Cleavable Linker.", "ACS chemical biology", "2018 Aug 17", "Qin K, Zhu Y, Qin W, Gao J, Shao X, Wang YL, Zhou W, Wang C, Chen X", "protein_xref_pubmed", "30059200", "protein_xref_oglcnac_atlas", "E9PUR0", "G49108TO" ], [ "E9PUR0-1", "Novel Antibodies for the Simple and Efficient Enrichment of Native O-GlcNAc Modified Peptides.", "Molecular & cellular proteomics : MCP", "2021", "Burt RA, Dejanovic B, Peckham HJ, Lee KA, Li X, Ounadjela JR, Rao A, Malaker SA, Carr SA, Myers SA", "protein_xref_pubmed", "34678516", "protein_xref_oglcnac_atlas", "E9PUR0", "G49108TO" ] ] }, "readme": "Name\n - Mouse O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2023-02-27T21:08:01.227Z\n\nModified on\n - 2023-03-06T20:16:31.984Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Jungfeng Ma [junfeng.ma@georgetown.edu ]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication present in the dataset Mouse O-GlcNAc Glycosylation Sites (O-GlcNAc Atlas) https://data.glygen.org/GLY_000709, contributed by Jungfeng Ma's group.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n - Publications\n - Citations\n - PubMed\n\n Pipeline Steps\n - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: doi_citations.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/compiled/doi_citations.csv\n Name: mouse_proteoform_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_proteoform_glycosylation_sites_oglcnac_atlas.csv\n Output Subdomain\n Name: mouse_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n Name: mouse_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1358\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"59\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"36\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"58\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"59\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"59\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1358\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/mouse_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv" }