{ "bcoid": "GLY_000693", "title": "Human UniProtKB Xref GDLPA", "description": "The dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to Gene and Drug ...", "filename": "human_protein_xref_cfde_gdlpa.csv", "filetype": "csv", "categories": { "species": [ "Homo sapiens" ], "molecule": [ "Protein" ], "tag": [ "GDLPA cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q6P1J9-1...", "protein_xref..." ], [ "Q6P1J9-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "ZBTB17", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "LOC105375816", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "PCDHB9", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "TOMM40", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "OR10V1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SLC18B1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SCYGR3", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "IQUB", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CRHR2", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CORO1B", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SIKE1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "OPA3", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "RACK1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "DAPK3", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "RCC1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "TNFSF8", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "GPR84", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "C9orf40", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "H3-5", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SFRP5", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "FA2H", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "VPS50", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "MRGPRX1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "OR4D1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "TTBK1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SLC44A5", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "F2RL2", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "TM6SF1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "OR52I1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SMO", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "LOC107986800", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "AFAP1L1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "ANKDD1A", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "ARRDC2", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "MUSK", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "MARCKSL1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "FMO4", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "FAT4", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "NDUFS5", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "KRTAP10-4", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SPTBN5", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "ARHGAP11A", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "AHI1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CLIC6", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CSTF3", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "INTS5", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "ITPKA", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CCDC73", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "HSPBP1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "ADH4", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "BMP1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SNX22", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "C20orf96", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "FUT10", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CEP68", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CALR3", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SLC31A2", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "USP17L20", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "XYLB", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SLC35D1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "PRKCA", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "DMAC2", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CNOT3", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "KMO", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "ZNF672", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SPATA12", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CIP2A", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "TEX38", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "H2BC14", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SERPINB4", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "TRAPPC4", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "ELOC", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "NPDC1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "RSRP1", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SLC25A29", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "NR1I4", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "LSM2", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "SSBP3", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "PRSS8", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "CNOT11", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "C8orf58", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "TRAF6", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "LOC105373989", "" ], [ "Q6P1J9-1", "protein_xref_cfde_gdlpa", "EDEM1", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref GDLPA\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-09-06T16:17:53.681025\n\nModified on\n - 2022-09-26T09:08:12.669053\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to Gene and Drug Landing Page Aggregator resource. If you use this dataset please provide proper attribution to Gene and Drug Landing Page Aggregator and GlyGen\n - Gene and Drug Landing Page Aggregator (GDLPA) has links to 53 gene, 18 variant and 19 drug repositories that provide direct links to gene and drug landing pages. You can search by gene or drug name and then choose the sites that contain knowledge about your gene or drug of interest. Resources supported by the NIH Common Fund are listed first and have the CFDE logo at their top right corner - https://cfde-gene-pages.cloud/.\n\nDescription Domain\n Keywords\n - Gene and Drug Landing Page Aggregator\n - GDLPA\n - cross-references\n - gene\n - drug\n - CFDE\n\n Pipeline Steps\n - Step-1: The script extracts the gene names from the dataset and maps to the GlyGen's UniProtKB canonical accessions to generate a csv dataset.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_xref_cfde_gdlpa.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/compiled/human_protein_xref_cfde_gdlpa.csv\n Output Subdomain\n Name: human_protein_xref_cfde_gdlpa.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/human_protein_xref_cfde_gdlpa.csv\n Name: human_protein_xref_cfde_gdlpa.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/human_protein_xref_cfde_gdlpa.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"19665\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/human_protein_xref_cfde_gdlpa.csv" }