{ "bcoid": "GLY_000665", "title": "Fruitfly UniProtKB Xref KEGG PATHWAY", "description": "The Fruitfly UniProtKB Xref KEGG PATHWAY contains fruitfly [taxid:7227] UniProtKB canonical accessions ...", "filename": "fruitfly_protein_xref_kegg.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tag": [ "Kegg Pathway cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P40796-1...", "protein_xref..." ], [ "P40797-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P40796-1", "protein_xref_kegg", "dme:Dmel_CG10922", "" ], [ "P40797-1", "protein_xref_kegg", "dme:Dmel_CG8705", "" ], [ "P40794-1", "protein_xref_kegg", "dme:Dmel_CG1480", "" ], [ "P40795-1", "protein_xref_kegg", "dme:Dmel_CG9559", "" ], [ "P40792-1", "protein_xref_kegg", "dme:Dmel_CG2248", "" ], [ "P40793-1", "protein_xref_kegg", "dme:Dmel_CG12530", "" ], [ "P40791-1", "protein_xref_kegg", "dme:Dmel_CG1429", "" ], [ "P40798-1", "protein_xref_kegg", "dme:Dmel_CG3647", "" ], [ "P40421-1", "protein_xref_kegg", "dme:Dmel_CG44746", "" ], [ "P40423-1", "protein_xref_kegg", "dme:Dmel_CG3595", "" ], [ "P40427-1", "protein_xref_kegg", "dme:Dmel_CG8933", "" ], [ "A2VEV2-1", "protein_xref_kegg", "dme:Dmel_CG34323", "" ], [ "A2VEV0-1", "protein_xref_kegg", "dme:Dmel_CG34302", "" ], [ "P08841-1", "protein_xref_kegg", "dme:Dmel_CG3401", "" ], [ "Q9VE87-1", "protein_xref_kegg", "dme:Dmel_CG7669", "" ], [ "Q9VE86-1", "protein_xref_kegg", "dme:Dmel_CG7670", "" ], [ "Q9VE85-1", "protein_xref_kegg", "dme:Dmel_CG7671", "" ], [ "P05389-1", "protein_xref_kegg", "dme:Dmel_CG4918", "" ], [ "Q9VK71-1", "protein_xref_kegg", "dme:Dmel_CG12287", "" ], [ "Q9V776-1", "protein_xref_kegg", "dme:Dmel_CG17453", "" ], [ "Q9VRR3-1", "protein_xref_kegg", "dme:Dmel_CG32407", "" ], [ "M9PEG2-1", "protein_xref_kegg", "dme:Dmel_CG13288", "" ], [ "M9PBR6-1", "protein_xref_kegg", "dme:Dmel_CG33523", "" ], [ "P04388-1", "protein_xref_kegg", "dme:Dmel_CG1167", "" ], [ "A1ZB47-1", "protein_xref_kegg", "dme:Dmel_CG33958", "" ], [ "A1ZB42-1", "protein_xref_kegg", "dme:Dmel_CG42517", "" ], [ "A1ZB48-1", "protein_xref_kegg", "dme:Dmel_CG14500", "" ], [ "A1ZB49-1", "protein_xref_kegg", "dme:Dmel_CG30114", "" ], [ "Q9VYT1-1", "protein_xref_kegg", "dme:Dmel_CG11802", "" ], [ "Q9VLI9-1", "protein_xref_kegg", "dme:Dmel_CG9298", "" ], [ "Q9VLI1-1", "protein_xref_kegg", "dme:Dmel_CG9465", "" ], [ "Q9VLI0-1", "protein_xref_kegg", "dme:Dmel_CG9466", "" ], [ "Q9VLI3-1", "protein_xref_kegg", "dme:Dmel_CG12438", "" ], [ "Q9VLI2-1", "protein_xref_kegg", "dme:Dmel_CG9463", "" ], [ "Q9VLI4-1", "protein_xref_kegg", "dme:Dmel_CG12437", "" ], [ "Q9VLI6-1", "protein_xref_kegg", "dme:Dmel_CG9314", "" ], [ "Q95RA8-1", "protein_xref_kegg", "dme:Dmel_CG13852", "" ], [ "Q02870-1", "protein_xref_kegg", "dme:Dmel_CG8019", "" ], [ "Q7JUM3-1", "protein_xref_kegg", "dme:Dmel_CG6401", "" ], [ "Q8SXV2-1", "protein_xref_kegg", "dme:Dmel_CG31675", "" ], [ "Q8SXV4-1", "protein_xref_kegg", "dme:Dmel_CG7296", "" ], [ "Q95R34-1", "protein_xref_kegg", "dme:Dmel_CG3191", "" ], [ "Q8SXV9-1", "protein_xref_kegg", "dme:Dmel_CG12998", "" ], [ "Q95R35-1", "protein_xref_kegg", "dme:Dmel_CG32064", "" ], [ "Q9VME8-1", "protein_xref_kegg", "dme:Dmel_CG9501", "" ], [ "Q9VME9-1", "protein_xref_kegg", "dme:Dmel_CG9499", "" ], [ "Q9VME0-1", "protein_xref_kegg", "dme:Dmel_CG13982", "" ], [ "Q9VME1-1", "protein_xref_kegg", "dme:Dmel_CG42369", "" ], [ "Q9VME2-1", "protein_xref_kegg", "dme:Dmel_CG42370", "" ], [ "Q9VME3-1", "protein_xref_kegg", "dme:Dmel_CG9507", "" ], [ "Q9VME5-1", "protein_xref_kegg", "dme:Dmel_CG9506", "" ], [ "Q9VVS3-1", "protein_xref_kegg", "dme:Dmel_CG6885", "" ], [ "Q9VVS2-1", "protein_xref_kegg", "dme:Dmel_CG12477", "" ], [ "Q9VZZ6-1", "protein_xref_kegg", "dme:Dmel_CG16985", "" ], [ "A1ZAX1-1", "protein_xref_kegg", "dme:Dmel_CG4954", "" ], [ "P17336-1", "protein_xref_kegg", "dme:Dmel_CG6871", "" ], [ "A0A0B4KFC9-1", "protein_xref_kegg", "dme:Dmel_CG10073", "" ], [ "A8JQT5-1", "protein_xref_kegg", "dme:Dmel_CG44193", "" ], [ "P56079-1", "protein_xref_kegg", "dme:Dmel_CG7962", "" ], [ "Q9I7P2-1", "protein_xref_kegg", "dme:Dmel_CG9016", "" ], [ "Q9W0I6-1", "protein_xref_kegg", "dme:Dmel_CG9128", "" ], [ "Q7KN75-1", "protein_xref_kegg", "dme:Dmel_CG5170", "" ], [ "Q9VWS8-1", "protein_xref_kegg", "dme:Dmel_CG15042", "" ], [ "Q9VWS9-1", "protein_xref_kegg", "dme:Dmel_CG6481", "" ], [ "Q9VWS4-1", "protein_xref_kegg", "dme:Dmel_CG6531", "" ], [ "Q9VWS5-1", "protein_xref_kegg", "dme:Dmel_CG15040", "" ], [ "Q9VWS7-1", "protein_xref_kegg", "dme:Dmel_CG15047", "" ], [ "Q9VWS0-1", "protein_xref_kegg", "dme:Dmel_CG6632", "" ], [ "Q9VWS1-1", "protein_xref_kegg", "dme:Dmel_CG6617", "" ], [ "Q9VWS2-1", "protein_xref_kegg", "dme:Dmel_CG6540", "" ], [ "G4LU05-1", "protein_xref_kegg", "dme:Dmel_CG44328", "" ], [ "Q9VHV8-1", "protein_xref_kegg", "dme:Dmel_CG7850", "" ], [ "Q8SYY6-1", "protein_xref_kegg", "dme:Dmel_CG32276", "" ], [ "Q9VZ85-1", "protein_xref_kegg", "dme:Dmel_CG32239", "" ], [ "P48554-1", "protein_xref_kegg", "dme:Dmel_CG8556", "" ], [ "P48555-1", "protein_xref_kegg", "dme:Dmel_CG2849", "" ], [ "Q9VBR7-1", "protein_xref_kegg", "dme:Dmel_CG11908", "" ], [ "Q9VFD3-1", "protein_xref_kegg", "dme:Dmel_CG42788", "" ], [ "Q9W277-1", "protein_xref_kegg", "dme:Dmel_CG5625", "" ], [ "Q9VUR3-1", "protein_xref_kegg", "dme:Dmel_CG12304", "" ], [ "Q8INT0-1", "protein_xref_kegg", "dme:Dmel_CG31493", "" ], [ "Q9V969-1", "protein_xref_kegg", "dme:Dmel_CG13441", "" ], [ "Q9V968-1", "protein_xref_kegg", "dme:Dmel_CG30152", "" ], [ "Q9VUR2-1", "protein_xref_kegg", "dme:Dmel_CG12301", "" ] ] }, "readme": "Name\n - Fruitfly UniProtKB Xref KEGG PATHWAY\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-08-31T13:17:32.978920\n\nModified on\n - 2022-09-26T09:08:12.598531\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly UniProtKB Xref KEGG PATHWAY contains fruitfly [taxid:7227] UniProtKB canonical accessions cross-referenced to KEGG PATHWAY database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks.\n\nDescription Domain\n Keywords\n - pathways\n - reactions\n - KEGG Pathway\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to KEGG PATHWAY database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-drosophila-melanogaster.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-drosophila-melanogaster.nt\n Output Subdomain\n Name: fruitfly_protein_xref_kegg.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/fruitfly_protein_xref_kegg.csv\n Name: fruitfly_protein_xref_kegg.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/fruitfly_protein_xref_kegg.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13710\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"13854\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/fruitfly_protein_xref_kegg.csv" }