{ "bcoid": "GLY_000645", "title": "Fruitfly Protein Information (NCBI RefSeq)", "description": "The Fruitfly Protein Information (NCBI RefSeq) dataset contains fruitfly [taxid:7227] protein information ...", "filename": "fruitfly_protein_info_refseq.csv", "filetype": "csv", "categories": { "species": [ "Drosophila melanogaster" ], "molecule": [ "Protein" ], "tag": [ "Protein Information" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Robel...", " mapped NP_0..." ], [ "Robel...", " feat NP_001..." ] ], "headers": [ "uniprotkb_ca...", "p_refseq_ac_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "p_refseq_ac_best_match" }, { "type": "string", "label": "refseq_protein_name" }, { "type": "string", "label": "refseq_protein_length" }, { "type": "string", "label": "refseq_protein_summary" } ], [ "Robel", " mapped NP_001104092" ], [ "Robel", " feat NP_001104092" ], [ "A8QI34-1", "NP_001104092", "JYalpha", "1009", "" ], [ "Robel", " mapped NP_001245400" ], [ "Robel", " feat NP_001245400" ], [ "Q9V4A7-1", "NP_001245400", "plexin B, isoform B", "2051", "" ], [ "Robel", " mapped NP_524617" ], [ "Robel", " feat NP_524617" ], [ "P19538-1", "NP_524617", "cubitus interruptus, isoform A", "1397", "" ], [ "Robel", " mapped NP_001245401" ], [ "Robel", " feat NP_001245401" ], [ "P19538-1", "NP_001245401", "cubitus interruptus, isoform C", "572", "" ], [ "Robel", " mapped NP_001245402" ], [ "Robel", " feat NP_001245402" ], [ "P19538-1", "NP_001245402", "cubitus interruptus, isoform B", "1279", "" ], [ "Robel", " mapped NP_001245404" ], [ "Robel", " feat NP_001245404" ], [ "P55830-1", "NP_001245404", "ribosomal protein S3A, isoform F", "268", "" ], [ "Robel", " mapped NP_001245405" ], [ "Robel", " feat NP_001245405" ], [ "Q8IMA8-1", "NP_001245405", "pangolin, isoform Q", "494", "" ], [ "Robel", " mapped NP_726528" ], [ "Robel", " feat NP_726528" ], [ "Q8IMA8-1", "NP_726528", "pangolin, isoform J", "1192", "" ], [ "Robel", " mapped NP_001014685" ], [ "Robel", " feat NP_001014685" ], [ "Q8IMA8-1", "NP_001014685", "pangolin, isoform H", "747", "" ], [ "Robel", " mapped NP_001162819" ], [ "Robel", " feat NP_001162819" ], [ "Q0KIE7-1", "NP_001162819", "ankyrin, isoform E", "1549", "" ], [ "Robel", " mapped NP_726533" ], [ "Robel", " feat NP_726533" ], [ "A8DZ26-1", "NP_726533", "anne boleyn, isoform E", "595", "" ], [ "Robel", " mapped NP_726535" ], [ "Robel", " feat NP_726535" ], [ "A8DZ26-1", "NP_726535", "anne boleyn, isoform F", "521", "" ], [ "Robel", " mapped NP_995587" ], [ "Robel", " feat NP_995587" ], [ "A8DZ26-1", "NP_995587", "anne boleyn, isoform G", "1388", "" ], [ "Robel", " mapped NP_726534" ], [ "Robel", " feat NP_726534" ], [ "A8DZ26-1", "NP_726534", "anne boleyn, isoform A", "1314", "" ], [ "Robel", " mapped NP_726532" ], [ "Robel", " feat NP_726532" ], [ "A8DZ26-1", "NP_726532", "anne boleyn, isoform D", "658", "" ], [ "Robel", " mapped NP_726537" ], [ "Robel", " feat NP_726537" ], [ "A8DZ26-1", "NP_726537", "anne boleyn, isoform C", "497", "" ], [ "Robel", " mapped NP_001096849" ], [ "Robel", " feat NP_001096849" ], [ "A8DZ26-1", "NP_001096849", "anne boleyn, isoform H", "1451", "" ], [ "Robel", " mapped NP_001259043" ], [ "Robel", " feat NP_001259043" ], [ "A8DZ26-1", "NP_001259043", "anne boleyn, isoform I", "1290", "" ], [ "Robel", " mapped NP_726538" ], [ "Robel", " feat NP_726538" ], [ "Q8IMA2-1", "NP_726538", "uncharacterized protein", "443", "" ], [ "Robel", " mapped NP_001284709" ], [ "Robel", " feat NP_001284709" ], [ "Q8SYQ4-1", "NP_001284709", "uncharacterized protein, isoform B", "148", "" ], [ "Robel", " mapped NP_001259044" ], [ "Robel", " feat NP_001259044" ], [ "Q2PDM3-1", "NP_001259044", "uncharacterized protein, isoform D", "1965", "" ], [ "Robel", " mapped NP_001033801" ], [ "Robel", " feat NP_001033801" ], [ "Q2PDM3-1", "NP_001033801", "uncharacterized protein, isoform E", "2289", "" ], [ "Robel", " mapped NP_001259045" ], [ "Robel", " feat NP_001259045" ], [ "Q2PDM3-1", "NP_001259045", "uncharacterized protein, isoform F", "1951", "" ], [ "Robel", " mapped NP_001259046" ], [ "Robel", " feat NP_001259046" ], [ "Q2PDM3-1", "NP_001259046", "uncharacterized protein, isoform G", "1945", "" ], [ "Robel", " mapped NP_651905" ], [ "Robel", " feat NP_651905" ], [ "H9XVM3-1", "NP_651905", "ADP ribosylation factor-like 4, isoform A", "312", "" ], [ "Robel", " mapped NP_001245408" ], [ "Robel", " feat NP_001245408" ], [ "H9XVM3-1", "NP_001245408", "ADP ribosylation factor-like 4, isoform B", "313", "" ], [ "Robel", " mapped NP_001259047" ], [ "Robel", " feat NP_001259047" ], [ "H9XVM3-1", "NP_001259047", "ADP ribosylation factor-like 4, isoform C", "100", "" ], [ "Robel", " mapped NP_001245409" ], [ "Robel", " feat NP_001245409" ], [ "Q7JUN3-1", "NP_001245409", "ATP binding cassette subfamily D member 1, isoform H", "730", "" ] ] }, "readme": "Name\n - Fruitfly Protein Information (NCBI RefSeq)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-08-30T16:17:01.573604\n\nModified on\n - 2022-09-26T09:08:12.614356\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Fruitfly Protein Information (NCBI RefSeq) dataset contains fruitfly [taxid:7227] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein information\n - protein length\n - NCBI RefSeq\n - protein summary\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: fruitfly_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/fruitfly_protein_xref_refseq.csv\n Name: refseq_protein_all_7227.gpff\n URI: https:/data.glygen.org/ln2downloads/ncbi/refseq/2023_10_12/refseq_protein_all_7227.gpff\n Output Subdomain\n Name: fruitfly_protein_info_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/fruitfly_protein_info_refseq.csv\n Name: fruitfly_protein_info_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/fruitfly_protein_info_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13720\"\n Name: \"p_refseq_ac_best_match\"\n Description: \"Best match NCBI RefSeq protein accession to UniProtKB canonical accession\"\n Unique Values: \"61758\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"12523\"\n Name: \"refseq_protein_length\"\n Description: \"Length of the protein in NCBI RefSeq database\"\n Unique Values: \"2542\"\n Name: \"refseq_protein_summary\"\n Description: \"Function of the protein in NCBI RefSeq database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/fruitfly_protein_info_refseq.csv" }