{ "bcoid": "GLY_000620", "title": "Glycan Xref Structure Dictionary", "description": "The dataset provides cross-references to the Glycan Dictionary Accessions for the associated glycan (GlyTouCan ...", "filename": "glycan_xref_dictionary.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "Glycan Dictionary cross-references" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Rattus", "Sus scrofa", "Rattus norvegicus", "Mus musculus", "Sus scrofa domesticus", "Drosophila melanogaster", "Severe acute respiratory syndrome coronavirus 2", "Saccharomyces cerevisiae" ] }, "minitable": { "content": [ [ "G06953DR...", "GSD000001..." ], [ "G41145LF...", "GSD000002..." ] ], "headers": [ "glytoucan_ac...", "xref_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_key" } ], [ "G06953DR", "GSD000001", "glycan_xref_dictionary" ], [ "G41145LF", "GSD000002", "glycan_xref_dictionary" ], [ "G67383AR", "GSD000003", "glycan_xref_dictionary" ], [ "G56526JU", "GSD000004", "glycan_xref_dictionary" ], [ "G10203DW", "GSD000005", "glycan_xref_dictionary" ], [ "G78706CK", "GSD000006", "glycan_xref_dictionary" ], [ "G12295TB", "GSD000007", "glycan_xref_dictionary" ], [ "G00659GQ", "GSD000008", "glycan_xref_dictionary" ], [ "G08371CD", "GSD000009", "glycan_xref_dictionary" ], [ "G13157WZ", "GSD000010", "glycan_xref_dictionary" ], [ "G80722US", "GSD000188", "glycan_xref_dictionary" ], [ "G00672PE", "GSD000011", "glycan_xref_dictionary" ], [ "G74121RX", "GSD000012", "glycan_xref_dictionary" ], [ "G47325QT", "GSD000013", "glycan_xref_dictionary" ], [ "G24432YB", "GSD000016", "glycan_xref_dictionary" ], [ "G21856LC", "GSD000019", "glycan_xref_dictionary" ], [ "G72557NR", "GSD000020", "glycan_xref_dictionary" ], [ "G11485ID", "GSD000021", "glycan_xref_dictionary" ], [ "G00066MO", "GSD000029", "glycan_xref_dictionary" ], [ "G66163TI", "GSD000030", "glycan_xref_dictionary" ], [ "G97501MA", "GSD000190", "glycan_xref_dictionary" ], [ "G74353FF", "GSD000014", "glycan_xref_dictionary" ], [ "G54826OZ", "GSD000027", "glycan_xref_dictionary" ], [ "G99315PE", "GSD000187", "glycan_xref_dictionary" ], [ "G37830TX", "GSD000028", "glycan_xref_dictionary" ], [ "G44060QH", "GSD000031", "glycan_xref_dictionary" ], [ "G62735WZ", "GSD000032", "glycan_xref_dictionary" ], [ "G31734OS", "GSD000033", "glycan_xref_dictionary" ], [ "G89208KM", "GSD000189", "glycan_xref_dictionary" ], [ "G34881WK", "GSD000034", "glycan_xref_dictionary" ], [ "G25216QA", "GSD000035", "glycan_xref_dictionary" ], [ "G00294TN", "GSD000036", "glycan_xref_dictionary" ], [ "G70519XK", "GSD000037", "glycan_xref_dictionary" ], [ "G00052MO", "GSD000038", "glycan_xref_dictionary" ], [ "G94435QH", "GSD000105", "glycan_xref_dictionary" ], [ "G98465JN", "GSD000039", "glycan_xref_dictionary" ], [ "G97345NY", "GSD000040", "glycan_xref_dictionary" ], [ "G04416BG", "GSD000041", "glycan_xref_dictionary" ], [ "G03277YI", "GSD000044", "glycan_xref_dictionary" ], [ "G00031MO", "GSD000186", "glycan_xref_dictionary" ], [ "G00033MO", "GSD000046", "glycan_xref_dictionary" ], [ "G00035MO", "GSD000047", "glycan_xref_dictionary" ], [ "G00037MO", "GSD000048", "glycan_xref_dictionary" ], [ "G78059CC", "GSD000049", "glycan_xref_dictionary" ], [ "G78059CC", "GSD000050", "glycan_xref_dictionary" ], [ "G78059CC", "GSD000051", "glycan_xref_dictionary" ], [ "G11148DZ", "GSD000052", "glycan_xref_dictionary" ], [ "G57710SU", "GSD000053", "glycan_xref_dictionary" ], [ "G79535HZ", "GSD000058", "glycan_xref_dictionary" ], [ "G97932OH", "GSD000060", "glycan_xref_dictionary" ], [ "G97932OH", "GSD000061", "glycan_xref_dictionary" ], [ "G54937EM", "GSD000062", "glycan_xref_dictionary" ], [ "G93400AK", "GSD000063", "glycan_xref_dictionary" ], [ "G01614ZM", "GSD000064", "glycan_xref_dictionary" ], [ "G80062GG", "GSD000068", "glycan_xref_dictionary" ], [ "G80062GG", "GSD000069", "glycan_xref_dictionary" ], [ "G91532KA", "GSD000071", "glycan_xref_dictionary" ], [ "G02240AO", "GSD000075", "glycan_xref_dictionary" ], [ "G67988RO", "GSD000078", "glycan_xref_dictionary" ], [ "G65889KE", "GSD000079", "glycan_xref_dictionary" ], [ "G33532XU", "GSD000080", "glycan_xref_dictionary" ], [ "G99053DY", "GSD000081", "glycan_xref_dictionary" ], [ "G81983KG", "GSD000082", "glycan_xref_dictionary" ], [ "G46677TE", "GSD000083", "glycan_xref_dictionary" ], [ "G45714BQ", "GSD000083", "glycan_xref_dictionary" ], [ "G37184KW", "GSD000084", "glycan_xref_dictionary" ], [ "G02657AK", "GSD000085", "glycan_xref_dictionary" ], [ "G98544DH", "GSD000086", "glycan_xref_dictionary" ], [ "G00061MO", "GSD000087", "glycan_xref_dictionary" ], [ "G00061MO", "GSD000088", "glycan_xref_dictionary" ], [ "G00059MO", "GSD000089", "glycan_xref_dictionary" ], [ "G71142DF", "GSD000090", "glycan_xref_dictionary" ], [ "G48558GR", "GSD000091", "glycan_xref_dictionary" ], [ "G79389NT", "GSD000092", "glycan_xref_dictionary" ], [ "G91237TK", "GSD000093", "glycan_xref_dictionary" ], [ "G30207PZ", "GSD000094", "glycan_xref_dictionary" ], [ "G93805MV", "GSD000095", "glycan_xref_dictionary" ], [ "G18625KA", "GSD000096", "glycan_xref_dictionary" ], [ "G54733XO", "GSD000097", "glycan_xref_dictionary" ], [ "G99524KA", "GSD000098", "glycan_xref_dictionary" ], [ "G68110IF", "GSD000099", "glycan_xref_dictionary" ], [ "G02149VR", "GSD000100", "glycan_xref_dictionary" ], [ "G40183QN", "GSD000101", "glycan_xref_dictionary" ], [ "G78818SP", "GSD000102", "glycan_xref_dictionary" ] ] }, "readme": "Name\n - Glycan Xref Structure Dictionary\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2022-01-06T12:10:49.966404\n\nModified on\n - 2022-09-26T09:08:12.760740\n\nCreated by\n - Karina Martinez [karinamartinez@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides cross-references to the Glycan Dictionary Accessions for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY000281). Source database: https://wiki.glygen.org/index.php/Glycan_structure_dictionary\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Structure Dictionary\n - Cross-references\n - Motif\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the associated PMIDs for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_masterlist.csv\n Name: glycan_dictionary.csv\n URI: https:/data.glygen.org/ln2downloads/glycan_dictionary/03_03_2023/glycan_dictionary.csv\n Output Subdomain\n Name: glycan_xref_dictionary.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_xref_dictionary.csv\n Name: glycan_xref_dictionary.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_xref_dictionary.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"126\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"136\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/glycan_xref_dictionary.csv" }