{ "bcoid": "GLY_000603", "title": "Glycan Pathway Reactome", "description": "-", "filename": "glycan_pathway_reactome.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "Pathway Reactome" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Mus musculus", "Rattus norvegicus", "Drosophila melanogaster", "Severe acute respiratory syndrome coronavirus 2", "Saccharomyces cerevisiae", "Rattus", "Sus scrofa" ] }, "minitable": { "content": [ [ "G71142DF...", "beta-D-gluco..." ], [ "G71142DF...", "beta-D-gluco..." ] ], "headers": [ "glytoucan_ac...", "compound_nam..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "compound_name" }, { "type": "string", "label": "reactome_pathway_id" }, { "type": "string", "label": "pathway_name" }, { "type": "string", "label": "species_scientific_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" } ], [ "G71142DF", "beta-D-glucose [endoplasmic reticulum lumen]", "R-HSA-9683686", "Maturation of spike protein", "Homo sapiens", "glycan_xref_reactome", "R-ALL-9683087" ], [ "G71142DF", "beta-D-glucose [endoplasmic reticulum lumen]", "R-HSA-9694548", "Maturation of spike protein", "Homo sapiens", "glycan_xref_reactome", "R-ALL-9683087" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-BTA-975577", "N-Glycan antennae elongation", "Bos taurus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-CFA-975577", "N-Glycan antennae elongation", "Canis familiaris", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-DME-975577", "N-Glycan antennae elongation", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-DRE-975577", "N-Glycan antennae elongation", "Danio rerio", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-GGA-975577", "N-Glycan antennae elongation", "Gallus gallus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-HSA-975577", "N-Glycan antennae elongation", "Homo sapiens", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-MMU-975577", "N-Glycan antennae elongation", "Mus musculus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-RNO-975577", "N-Glycan antennae elongation", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-SSC-975577", "N-Glycan antennae elongation", "Sus scrofa", "glycan_xref_reactome", "R-ALL-975925" ], [ "G81533KY", "Neu5Ac [Golgi lumen]", "R-XTR-975577", "N-Glycan antennae elongation", "Xenopus tropicalis", "glycan_xref_reactome", "R-ALL-975925" ], [ "G74621DY", "Lac [extracellular region]", "R-BTA-189085", "Digestion of dietary carbohydrate", "Bos taurus", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [Golgi lumen]", "R-BTA-5653890", "Lactose synthesis", "Bos taurus", "glycan_xref_reactome", "R-ALL-5653871" ], [ "G74621DY", "Lac [extracellular region]", "R-CEL-189085", "Digestion of dietary carbohydrate", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [extracellular region]", "R-CFA-189085", "Digestion of dietary carbohydrate", "Canis familiaris", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [Golgi lumen]", "R-CFA-5653890", "Lactose synthesis", "Canis familiaris", "glycan_xref_reactome", "R-ALL-5653871" ], [ "G74621DY", "Lac [extracellular region]", "R-DME-189085", "Digestion of dietary carbohydrate", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [Golgi lumen]", "R-DME-5653890", "Lactose synthesis", "Drosophila melanogaster", "glycan_xref_reactome", "R-ALL-5653871" ], [ "G74621DY", "Lac [extracellular region]", "R-DRE-189085", "Digestion of dietary carbohydrate", "Danio rerio", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [Golgi lumen]", "R-DRE-5653890", "Lactose synthesis", "Danio rerio", "glycan_xref_reactome", "R-ALL-5653871" ], [ "G74621DY", "Lac [extracellular region]", "R-GGA-189085", "Digestion of dietary carbohydrate", "Gallus gallus", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [extracellular region]", "R-HSA-189085", "Digestion of dietary carbohydrate", "Homo sapiens", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [Golgi lumen]", "R-HSA-5653890", "Lactose synthesis", "Homo sapiens", "glycan_xref_reactome", "R-ALL-5653871" ], [ "G74621DY", "Lac [extracellular region]", "R-HSA-5659898", "Intestinal saccharidase deficiencies", "Homo sapiens", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [extracellular region]", "R-MMU-189085", "Digestion of dietary carbohydrate", "Mus musculus", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [Golgi lumen]", "R-MMU-5653890", "Lactose synthesis", "Mus musculus", "glycan_xref_reactome", "R-ALL-5653871" ], [ "G74621DY", "Lac [extracellular region]", "R-RNO-189085", "Digestion of dietary carbohydrate", "Rattus norvegicus", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [extracellular region]", "R-SSC-189085", "Digestion of dietary carbohydrate", "Sus scrofa", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [Golgi lumen]", "R-SSC-5653890", "Lactose synthesis", "Sus scrofa", "glycan_xref_reactome", "R-ALL-5653871" ], [ "G74621DY", "Lac [extracellular region]", "R-XTR-189085", "Digestion of dietary carbohydrate", "Xenopus tropicalis", "glycan_xref_reactome", "R-ALL-188973" ], [ "G74621DY", "Lac [Golgi lumen]", "R-XTR-5653890", "Lactose synthesis", "Xenopus tropicalis", "glycan_xref_reactome", "R-ALL-5653871" ], [ "G58161NS", "Glc [extracellular region]", "R-BTA-189085", "Digestion of dietary carbohydrate", "Bos taurus", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-BTA-189200", "Cellular hexose transport", "Bos taurus", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [extracellular region]", "R-BTA-189200", "Cellular hexose transport", "Bos taurus", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [extracellular region]", "R-BTA-381771", "Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)", "Bos taurus", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [extracellular region]", "R-BTA-418594", "G alpha (i) signalling events", "Bos taurus", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [extracellular region]", "R-BTA-420499", "Class C/3 (Metabotropic glutamate/pheromone receptors)", "Bos taurus", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [extracellular region]", "R-BTA-422085", "Synthesis, secretion, and deacylation of Ghrelin", "Bos taurus", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-BTA-422356", "Regulation of insulin secretion", "Bos taurus", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [extracellular region]", "R-BTA-422356", "Regulation of insulin secretion", "Bos taurus", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-BTA-5652227", "Fructose biosynthesis", "Bos taurus", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [cytosol]", "R-BTA-5653890", "Lactose synthesis", "Bos taurus", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [Golgi lumen]", "R-BTA-5653890", "Lactose synthesis", "Bos taurus", "glycan_xref_reactome", "R-ALL-964746" ], [ "G58161NS", "Glc [cytosol]", "R-BTA-70171", "Glycolysis", "Bos taurus", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [cytosol]", "R-BTA-70221", "Glycogen breakdown (glycogenolysis)", "Bos taurus", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [lysosomal lumen]", "R-BTA-70221", "Glycogen breakdown (glycogenolysis)", "Bos taurus", "glycan_xref_reactome", "R-ALL-1605745" ], [ "G58161NS", "Glc [endoplasmic reticulum lumen]", "R-BTA-70263", "Gluconeogenesis", "Bos taurus", "glycan_xref_reactome", "R-ALL-113780" ], [ "G58161NS", "Glc [cytosol]", "R-BTA-8981373", "Intestinal hexose absorption", "Bos taurus", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [extracellular region]", "R-BTA-8981373", "Intestinal hexose absorption", "Bos taurus", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [Golgi lumen]", "R-BTA-964739", "N-glycan trimming and elongation in the cis-Golgi", "Bos taurus", "glycan_xref_reactome", "R-ALL-964746" ], [ "G58161NS", "Glc [extracellular region]", "R-BTA-9717207", "Sensory perception of sweet, bitter, and umami (glutamate) taste", "Bos taurus", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-BTA-9840310", "Glycosphingolipid catabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [lysosomal lumen]", "R-BTA-9840310", "Glycosphingolipid catabolism", "Bos taurus", "glycan_xref_reactome", "R-ALL-1605745" ], [ "G58161NS", "Glc [extracellular region]", "R-CEL-189085", "Digestion of dietary carbohydrate", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-CEL-189200", "Cellular hexose transport", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [extracellular region]", "R-CEL-189200", "Cellular hexose transport", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-CEL-422356", "Regulation of insulin secretion", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [extracellular region]", "R-CEL-422356", "Regulation of insulin secretion", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-CEL-5652227", "Fructose biosynthesis", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [cytosol]", "R-CEL-5653890", "Lactose synthesis", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [Golgi lumen]", "R-CEL-5653890", "Lactose synthesis", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-964746" ], [ "G58161NS", "Glc [cytosol]", "R-CEL-70171", "Glycolysis", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [cytosol]", "R-CEL-70221", "Glycogen breakdown (glycogenolysis)", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [cytosol]", "R-CEL-8981373", "Intestinal hexose absorption", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [extracellular region]", "R-CEL-8981373", "Intestinal hexose absorption", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-CEL-9840310", "Glycosphingolipid catabolism", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [lysosomal lumen]", "R-CEL-9840310", "Glycosphingolipid catabolism", "Caenorhabditis elegans", "glycan_xref_reactome", "R-ALL-1605745" ], [ "G58161NS", "Glc [extracellular region]", "R-CFA-189085", "Digestion of dietary carbohydrate", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-CFA-189200", "Cellular hexose transport", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [extracellular region]", "R-CFA-189200", "Cellular hexose transport", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [extracellular region]", "R-CFA-381771", "Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [extracellular region]", "R-CFA-422085", "Synthesis, secretion, and deacylation of Ghrelin", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-CFA-422356", "Regulation of insulin secretion", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [extracellular region]", "R-CFA-422356", "Regulation of insulin secretion", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [cytosol]", "R-CFA-5652227", "Fructose biosynthesis", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [cytosol]", "R-CFA-5653890", "Lactose synthesis", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [Golgi lumen]", "R-CFA-5653890", "Lactose synthesis", "Canis familiaris", "glycan_xref_reactome", "R-ALL-964746" ], [ "G58161NS", "Glc [cytosol]", "R-CFA-70171", "Glycolysis", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [cytosol]", "R-CFA-70221", "Glycogen breakdown (glycogenolysis)", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [endoplasmic reticulum lumen]", "R-CFA-70263", "Gluconeogenesis", "Canis familiaris", "glycan_xref_reactome", "R-ALL-113780" ], [ "G58161NS", "Glc [cytosol]", "R-CFA-8981373", "Intestinal hexose absorption", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70113" ], [ "G58161NS", "Glc [extracellular region]", "R-CFA-8981373", "Intestinal hexose absorption", "Canis familiaris", "glycan_xref_reactome", "R-ALL-70115" ], [ "G58161NS", "Glc [Golgi lumen]", "R-CFA-964739", "N-glycan trimming and elongation in the cis-Golgi", "Canis familiaris", "glycan_xref_reactome", "R-ALL-964746" ] ] }, "readme": "Name\n - Glycan Pathway Reactome\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2021-10-15T07:09:29.335203\n\nModified on\n - 2022-09-26T09:08:12.468986\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - -\n\nDescription Domain\n Keywords\n - Glycan\n - Pathway\n - Reactome\n\n Pipeline Steps\n - Step-1: \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_xref_chebi.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_xref_chebi.csv\n Name: ChEBI2Reactome_PE_Pathway.txt\n URI: https:/data.glygen.org/ln2downloads/reactome/2023_10_11/ChEBI2Reactome_PE_Pathway.txt\n Output Subdomain\n Name: glycan_pathway_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_pathway_reactome.csv\n Name: glycan_pathway_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_pathway_reactome.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"31\"\n Name: \"compound_name\"\n Description: \"\"\n Unique Values: \"59\"\n Name: \"reactome_pathway_id\"\n Description: \"\"\n Unique Values: \"397\"\n Name: \"pathway_name\"\n Description: \"\"\n Unique Values: \"52\"\n Name: \"species_scientific_name\"\n Description: \"\"\n Unique Values: \"15\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"59\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/glycan_pathway_reactome.csv" }