{ "bcoid": "GLY_000580", "title": "Glycan sequence GWB", "description": "The dataset provides the glycan sequences in GlycoWorkBench format for the associated glycans (GlyTouCan ...", "filename": "glycan_sequences_gwb.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "GWB sequence format" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Sus scrofa", "Rattus", "Homo sapiens", "Mus musculus", "Saccharomyces cerevisiae", "Drosophila melanogaster", "Rattus norvegicus", "Severe acute respiratory syndrome coronavirus 2", "Sus scrofa domesticus", "Dictyostelium discoideum", "Hepacivirus C", "Severe acute respiratory syndrome-related coronavirus" ] }, "minitable": { "content": [ [ "G00002CF...", "freeEnd--1?1..." ], [ "G00009BX...", "freeEnd--?D-..." ] ], "headers": [ "glytoucan_ac...", "sequence_gwb..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" 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Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the glycan sequences in GlycoWorkBench format for the associated glycans (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY_000281).\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - GWB\n\n Pipeline Steps\n - Step-1: A python script is used to generate the GlycoWorkBench format based on the compositioon for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_masterlist.csv\n Name: names.tsv\n URI: https:/data.glygen.org/ln2downloads/glytoucan/gtc_12_09_2023/export/names.tsv\n Name: subsumption.tsv\n URI: https:/data.glygen.org/ln2downloads/glytoucan/gtc_12_09_2023/export/subsumption.tsv\n Output Subdomain\n Name: glycan_sequences_gwb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_sequences_gwb.csv\n Name: glycan_sequences_gwb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_sequences_gwb.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"39739\"\n Name: \"sequence_gwb\"\n Description: \"\"\n Unique Values: \"39505\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/glycan_sequences_gwb.csv" }