{ "bcoid": "GLY_000565", "title": "SARS-CoV2 Proteoform Glycosylation Citations (UniProtKB)", "description": "", "filename": "sarscov2_proteoform_citations_glycosylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "status": [ "Reviewed" ], "molecule": [ "Proteoform" ], "species": [ "Severe acute respiratory syndrome coronavirus 2" ], "tag": [ "Citation Glycosylation sites UniProtKB" ], "file_type": [ "csv" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P0DTC2-1...", "Structure, F..." ], [ "P0DTC2-1...", "Deducing the..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "P0DTC2-1", "Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.", "Cell", "2020 Apr 16", "Walls AC, Park YJ, Tortorici MA, Wall A, McGuire AT, Veesler D", "protein_xref_pubmed", "32155444", "protein_xref_uniprotkb_gly", "P0DTC2", "" ], [ "P0DTC2-1", "Deducing the N- and O- glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2.", "Glycobiology", "2020 May 4", "Shajahan A, Supekar NT, Gleinich AS, Azadi P", "protein_xref_pubmed", "32363391", "protein_xref_uniprotkb_gly", "P0DTC2", "" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_uniprotkb_gly", "P0DTC2", "" ], [ "P0DTC2-1", "Molecular Architecture of the SARS-CoV-2 Virus.", "Cell", "2020 Oct 29", "Yao H, Song Y, Chen Y, Wu N, Xu J, Sun C, Zhang J, Weng T, Zhang Z, Wu Z, Cheng L, Shi D, Lu X, Lei J, Crispin M, Shi Y, Li L, Li S", "protein_xref_pubmed", "32979942", "protein_xref_uniprotkb_gly", "P0DTC2", "" ], [ "P0DTC2-1", "Furin cleavage of the SARS-CoV-2 spike is modulated by O-glycosylation.", "Proceedings of the National Academy of Sciences of the United States of America", "2021 Nov 23", "Zhang L, Mann M, Syed ZA, Reynolds HM, Tian E, Samara NL, Zeldin DC, Tabak LA, Ten Hagen KG", "protein_xref_pubmed", "34732583", "protein_xref_uniprotkb_gly", "P0DTC2", "" ], [ "P0DTC8-1", "Unconventional secretion of unglycosylated ORF8 is critical for the cytokine storm during SARS-CoV-2 infection.", "PLoS pathogens", "2023-01", "Lin Xiaoyuan, Fu Beibei, Xiong Yan, Xing Na, Xue Weiwei, Guo Dong, Zaky Mohamed, Pavani Krishna, Kunec Dusan, Trimpert Jakob, Wu Haibo", "protein_xref_pubmed", "36689483", "protein_xref_uniprotkb_gly", "P0DTC8", "" ], [ "P0DTC8-1", "SARS-CoV-2 accessory protein ORF8 is secreted extracellularly as a glycoprotein homodimer.", "The Journal of biological chemistry", "2022 Mar", "Matsuoka K, Imahashi N, Ohno M, Ode H, Nakata Y, Kubota M, Sugimoto A, Imahashi M, Yokomaku Y, Iwatani Y", "protein_xref_pubmed", "35157849", "protein_xref_uniprotkb_gly", "P0DTC8", "" ], [ "P0DTC2-1", "Site-specific N-glycosylation Characterization of Recombinant SARS-CoV-2 Spike Proteins using High-Resolution Mass Spectrometry", "bioRxiv", "2020", "Zhang Y., Zhao W., Mao Y., Wang S., Zhong Y., Su T., Gong M., Lu X., Cheng J., Yang H.", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "" ] ] }, "readme": "Name\n - SARS-CoV2 Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2021-06-03T16:50:40.376491\n\nModified on\n - 2023-03-14T16:56:09.877Z\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: sarscov2_proteoform_citations_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/compiled/sarscov2_proteoform_citations_unicarbkb.csv\n Name: sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n Output Subdomain\n Name: sarscov2_proteoform_citations_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_proteoform_citations_glycosylation_sites_uniprotkb.csv\n Name: sarscov2_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/sarscov2_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"2\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"8\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"7\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"7\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"8\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"8\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"2\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"2\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/sarscov2_proteoform_citations_glycosylation_sites_uniprotkb.csv" }