{ "bcoid": "GLY_000552", "title": "Glycan Xref GlyTouCan", "description": "The dataset provides cross-references to GlyTouCan for the for GlyGen Mapper tool. The listed GlyTouCan ...", "filename": "glycan_xref_glytoucan.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "GlyTouCan" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Sus scrofa", "Rattus", "Homo sapiens", "Mus musculus", "Saccharomyces cerevisiae", "Drosophila melanogaster", "Rattus norvegicus", "Severe acute respiratory syndrome coronavirus 2", "Sus scrofa domesticus", "Dictyostelium discoideum", "Hepatitis C virus (isolate H)", "Severe acute respiratory syndrome-related coronavirus", "Hepacivirus C" ] }, "minitable": { "content": [ [ "G00002CF...", "G00002CF..." ], [ "G00009BX...", "G00009BX..." ] ], "headers": [ "glytoucan_ac...", "xref_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_key" } ], [ "G00002CF", "G00002CF", "glycan_xref_glytoucan" ], [ "G00009BX", "G00009BX", "glycan_xref_glytoucan" ], [ "G00012MO", "G00012MO", "glycan_xref_glytoucan" ], [ "G00012RZ", "G00012RZ", "glycan_xref_glytoucan" ], [ "G00013MO", "G00013MO", "glycan_xref_glytoucan" ], [ "G00014MO", "G00014MO", "glycan_xref_glytoucan" ], [ "G00015MO", "G00015MO", "glycan_xref_glytoucan" ], [ "G00016MO", "G00016MO", "glycan_xref_glytoucan" ], [ "G00017IP", "G00017IP", "glycan_xref_glytoucan" ], [ "G00017MO", "G00017MO", "glycan_xref_glytoucan" ], [ "G00018MO", "G00018MO", "glycan_xref_glytoucan" ], [ "G00024MO", "G00024MO", "glycan_xref_glytoucan" ], [ "G00025AJ", "G00025AJ", "glycan_xref_glytoucan" ], [ "G00025HU", "G00025HU", "glycan_xref_glytoucan" ], [ "G00025MO", "G00025MO", "glycan_xref_glytoucan" ], [ "G00025YC", "G00025YC", "glycan_xref_glytoucan" ], [ "G00026MO", "G00026MO", "glycan_xref_glytoucan" ], [ "G00027JG", "G00027JG", "glycan_xref_glytoucan" ], [ "G00027MO", "G00027MO", "glycan_xref_glytoucan" ], [ "G00028MO", "G00028MO", "glycan_xref_glytoucan" ], [ "G00029MO", "G00029MO", "glycan_xref_glytoucan" ], [ "G00030HB", "G00030HB", "glycan_xref_glytoucan" ], [ "G00030MO", "G00030MO", "glycan_xref_glytoucan" ], [ "G00030SF", "G00030SF", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ], [ "G00031MO", "G00031MO", "glycan_xref_glytoucan" ] ] }, "readme": "Name\n - Glycan Xref GlyTouCan\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2021-02-22T18:49:04.081640\n\nModified on\n - 2022-09-26T09:08:12.746691\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset provides cross-references to GlyTouCan for the for GlyGen Mapper tool. The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281)\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Cross-references\n - ID/Accession Mapping\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the accession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_masterlist.csv\n Output Subdomain\n Name: glycan_xref_glytoucan.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_xref_glytoucan.csv\n Name: glycan_xref_glytoucan.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_xref_glytoucan.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"46041\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"46041\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/glycan_xref_glytoucan.csv" }