{ "bcoid": "GLY_000521", "title": "Rat Phosphorylation Sites (iPTMnet)", "description": "", "filename": "rat_proteoform_phosphorylation_sites_iptmnet.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Phosphorylation Sites (iPTMnet)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P08050-1...", "264..." ], [ "P08050-1...", "264..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P08050-1", "264", "Lys", "", "", "protein_xref_intact", "P08050", "protein_xref_iptmnet", "P08050" ], [ "P08050-1", "264", "Lys", "", "", "protein_xref_iptmnet", "P08050", "protein_xref_iptmnet", "P08050" ], [ "P08050-1", "264", "Lys", "", "", "protein_xref_pubmed", "9278444", "protein_xref_iptmnet", "P08050" ], [ "P08483-1", "145", "Ser", "", "", "protein_xref_intact", "P08483", "protein_xref_iptmnet", "P08483" ], [ "P08483-1", "145", "Ser", "", "", "protein_xref_iptmnet", "P08483", "protein_xref_iptmnet", "P08483" ], [ "P08483-1", "145", "Ser", "", "", "protein_xref_pubmed", "20461055", "protein_xref_iptmnet", "P08483" ], [ "P10686-1", "771", "Tyr", "", "", "protein_xref_intact", "P10686", "protein_xref_iptmnet", "P10686" ], [ "P10686-1", "771", "Tyr", "", "", "protein_xref_iptmnet", "P10686", "protein_xref_iptmnet", "P10686" ], [ "P10686-1", "771", "Tyr", "", "", "protein_xref_pubmed", "9281317", "protein_xref_iptmnet", "P10686" ], [ "P10686-1", "783", "Tyr", "", "", "protein_xref_intact", "P10686", "protein_xref_iptmnet", "P10686" ], [ "P10686-1", "783", "Tyr", "", "", "protein_xref_iptmnet", "P10686", "protein_xref_iptmnet", "P10686" ], [ "P10686-1", "783", "Tyr", "", "", "protein_xref_pubmed", "15764700", "protein_xref_iptmnet", "P10686" ], [ "P10686-1", "783", "Tyr", "", "", "protein_xref_pubmed", "9281317", "protein_xref_iptmnet", "P10686" ], [ "P11275-1", "286", "Thr", "", "", "protein_xref_intact", "P11275", "protein_xref_iptmnet", "P11275" ], [ "P11275-1", "286", "Thr", "", "", "protein_xref_iptmnet", "P11275", "protein_xref_iptmnet", "P11275" ], [ "P11275-1", "286", "Thr", "", "", "protein_xref_pubmed", "24591565", "protein_xref_iptmnet", "P11275" ], [ "P16310-1", "594", "Tyr", "", "", "protein_xref_intact", "P16310", "protein_xref_iptmnet", "P16310" ], [ "P16310-1", "594", "Tyr", "", "", "protein_xref_iptmnet", "P16310", "protein_xref_iptmnet", "P16310" ], [ 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"protein_xref_pubmed", "18188153", "protein_xref_iptmnet", "P19493" ], [ "P20411-1", "65", "Tyr", "", "", "protein_xref_intact", "P20411", "protein_xref_iptmnet", "P20411" ], [ "P20411-1", "65", "Tyr", "", "", "protein_xref_iptmnet", "P20411", "protein_xref_iptmnet", "P20411" ], [ "P20411-1", "65", "Tyr", "", "", "protein_xref_pubmed", "7623809", "protein_xref_iptmnet", "P20411" ], [ "P25095-1", "319", "Tyr", "", "", "protein_xref_intact", "P25095", "protein_xref_iptmnet", "P25095" ], [ "P25095-1", "319", "Tyr", "", "", "protein_xref_iptmnet", "P25095", "protein_xref_iptmnet", "P25095" ], [ "P25095-1", "319", "Tyr", "", "", "protein_xref_pubmed", "9814969", "protein_xref_iptmnet", "P25095" ], [ "P29476-1", "741", "Ser", "", "", "protein_xref_intact", "P29476", "protein_xref_iptmnet", "P29476" ], [ "P29476-1", "741", "Ser", "", "", "protein_xref_iptmnet", "P29476", "protein_xref_iptmnet", "P29476" ], [ "P29476-1", "741", "Ser", "", "", "protein_xref_pubmed", "15251453", "protein_xref_iptmnet", "P29476" ], [ "P35570-1", "1172", "Tyr", "", "", "protein_xref_intact", "P35570", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "1172", "Tyr", "", "", "protein_xref_iptmnet", "P35570", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "1172", "Tyr", "", "", "protein_xref_pubmed", "7504175", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "1172", "Tyr", "", "", "protein_xref_pubmed", "8631859", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "628", "Tyr", "", "", "protein_xref_intact", "P35570", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "628", "Tyr", "", "", "protein_xref_iptmnet", "P35570", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "628", "Tyr", "", "", "protein_xref_pubmed", "1380456", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "895", "Tyr", "", "", "protein_xref_intact", "P35570", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "895", "Tyr", "", "", "protein_xref_iptmnet", "P35570", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "895", "Tyr", "", "", "protein_xref_pubmed", "7504175", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "895", "Tyr", "", "", "protein_xref_pubmed", "8491186", "protein_xref_iptmnet", "P35570" ], [ "P35570-1", "895", "Tyr", "", "", "protein_xref_pubmed", "8631859", "protein_xref_iptmnet", "P35570" ], [ "P35739-1", "684", "Tyr", "", "", "protein_xref_intact", "P35739", "protein_xref_iptmnet", "P35739" ], [ "P35739-1", "684", "Tyr", "", "", "protein_xref_iptmnet", "P35739", "protein_xref_iptmnet", "P35739" ], [ "P35739-1", "684", "Tyr", "", "", "protein_xref_pubmed", "10748052", "protein_xref_iptmnet", "P35739" ], [ "P35739-1", "794", "Tyr", "", "", "protein_xref_intact", "P35739", "protein_xref_iptmnet", "P35739" ], [ "P35739-1", "794", "Tyr", "", "", "protein_xref_iptmnet", "P35739", "protein_xref_iptmnet", "P35739" ], [ "P35739-1", "794", "Tyr", "", "", "protein_xref_pubmed", "10748052", "protein_xref_iptmnet", "P35739" ], [ "P52631-1", "272", "Glu", "", "", "protein_xref_intact", "P52631", "protein_xref_iptmnet", "P52631" ], [ "P52631-1", "272", "Glu", "", "", "protein_xref_iptmnet", "P52631", "protein_xref_iptmnet", "P52631" ], [ "P52631-1", "272", "Glu", "", "", "protein_xref_pubmed", "24396070", "protein_xref_iptmnet", "P52631" ], [ "P62755-1", "235", "Ser", "", "", "protein_xref_intact", "P62755", "protein_xref_iptmnet", "P62755" ], [ "P62755-1", "235", "Ser", "", "", "protein_xref_iptmnet", "P62755", "protein_xref_iptmnet", "P62755" ], [ "P62755-1", "235", "Ser", "", "", "protein_xref_pubmed", "29293066", "protein_xref_iptmnet", "P62755" ], [ "P62755-1", "236", "Ser", "", "", "protein_xref_intact", "P62755", "protein_xref_iptmnet", "P62755" ], [ "P62755-1", "236", "Ser", "", "", "protein_xref_iptmnet", "P62755", "protein_xref_iptmnet", "P62755" ], [ "P62755-1", "236", "Ser", "", "", "protein_xref_pubmed", "29293066", "protein_xref_iptmnet", "P62755" ], [ "P97710-1", "477", "Tyr", "", "", "protein_xref_intact", "P97710", "protein_xref_iptmnet", "P97710" ], [ "P97710-1", "477", "Tyr", "", "", "protein_xref_iptmnet", "P97710", "protein_xref_iptmnet", "P97710" ], [ "P97710-1", "477", "Tyr", "", "", "protein_xref_pubmed", "9535915", "protein_xref_iptmnet", "P97710" ], [ "P97710-1", "501", "Tyr", "", "", "protein_xref_intact", "P97710", "protein_xref_iptmnet", "P97710" ], [ "P97710-1", "501", "Tyr", "", "", "protein_xref_iptmnet", "P97710", "protein_xref_iptmnet", "P97710" ], [ "P97710-1", "501", "Tyr", "", "", "protein_xref_pubmed", "9535915", "protein_xref_iptmnet", "P97710" ], [ "Q05030-1", "750", "Tyr", "", "", "protein_xref_intact", "Q05030", "protein_xref_iptmnet", "Q05030" ], [ "Q05030-1", "750", "Tyr", "", "", "protein_xref_iptmnet", "Q05030", "protein_xref_iptmnet", "Q05030" ], [ "Q05030-1", "750", "Tyr", "", "", "protein_xref_pubmed", "16569213", "protein_xref_iptmnet", "Q05030" ], [ "Q63767-1", "762", "Tyr", "", "", "protein_xref_intact", "Q63767", "protein_xref_iptmnet", "Q63767" ], [ "Q63767-1", "762", "Tyr", "", "", "protein_xref_iptmnet", "Q63767", "protein_xref_iptmnet", "Q63767" ], [ "Q63767-1", "762", "Tyr", "", "", "protein_xref_pubmed", "16245368", "protein_xref_iptmnet", "Q63767" ], [ "Q6X936-1", "637", "Tyr", "", "", "protein_xref_intact", "Q6X936", "protein_xref_iptmnet", "Q6X936" ], [ "Q6X936-1", "637", "Tyr", "", "", "protein_xref_iptmnet", "Q6X936", "protein_xref_iptmnet", "Q6X936" ], [ "Q6X936-1", "637", "Tyr", "", "", "protein_xref_pubmed", "18258597", "protein_xref_iptmnet", "Q6X936" ], [ "O08838-1", "250", "Ser", "", "", "protein_xref_pelm", "O08838", "protein_xref_iptmnet", "O08838" ], [ "O08838-1", "250", "Ser", "", "", "protein_xref_iptmnet", "O08838", "protein_xref_iptmnet", "O08838" ], [ "O08838-1", "250", "Ser", "", "", "protein_xref_pubmed", "18344231", "protein_xref_iptmnet", "O08838" ], [ "O08838-1", "252", "Ser", "", "", "protein_xref_pelm", "O08838", "protein_xref_iptmnet", "O08838" ], [ "O08838-1", "252", "Ser", "", "", "protein_xref_iptmnet", "O08838", "protein_xref_iptmnet", "O08838" ] ] }, "readme": "Name\n - Rat Phosphorylation Sites (iPTMnet)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2020-08-17T16:58:50.536651\n\nModified on\n - 2022-09-26T09:08:12.590164\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_masterlist.csv\n Name: ptm.txt\n URI: https:/data.glygen.org/ln2downloads/iptmnet/2023_10_13/ptm.txt\n Output Subdomain\n Name: rat_proteoform_phosphorylation_sites_iptmnet.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_proteoform_phosphorylation_sites_iptmnet.csv\n Name: rat_proteoform_phosphorylation_sites_iptmnet.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_proteoform_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"2252\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"1507\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"7\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"57\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"57\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"9\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"4562\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"2263\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/rat_proteoform_phosphorylation_sites_iptmnet.csv" }