{ "bcoid": "GLY_000520", "title": "Mouse Phosphorylation Sites (iPTMNet)", "description": "", "filename": "mouse_proteoform_phosphorylation_sites_iptmnet.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Proteoform" ], "tag": [ "Phosphorylation Sites (iPTMnet)" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "E9PYG6-1...", "451..." ], [ "E9PYG6-1...", "451..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "E9PYG6-1", "451", "Tyr", "", "", "protein_xref_intact", "E9PYG6", "protein_xref_iptmnet", "E9PYG6" ], [ "E9PYG6-1", "451", "Tyr", "", "", "protein_xref_iptmnet", "E9PYG6", "protein_xref_iptmnet", "E9PYG6" ], [ "E9PYG6-1", "451", "Tyr", "", "", "protein_xref_pubmed", "18515860", "protein_xref_iptmnet", "E9PYG6" ], [ "O08553-1", "522", "Ser", "", "", "protein_xref_intact", "O08553", "protein_xref_iptmnet", "O08553" ], [ "O08553-1", "522", "Ser", "", "", "protein_xref_iptmnet", "O08553", "protein_xref_iptmnet", "O08553" ], [ "O08553-1", "522", "Ser", "", "", "protein_xref_pubmed", "23022559", "protein_xref_iptmnet", "O08553" ], [ "O09127-1", "615", "Tyr", "", "", "protein_xref_intact", "O09127", "protein_xref_iptmnet", "O09127" ], [ "O09127-1", "615", "Tyr", "", "", "protein_xref_iptmnet", "O09127", "protein_xref_iptmnet", "O09127" ], [ "O09127-1", "615", "Tyr", "", "", "protein_xref_pubmed", "10498895", 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"721", "Tyr", "", "", "protein_xref_pubmed", "1314163", "protein_xref_iptmnet", "P09581" ], [ "P09581-1", "921", "Tyr", "", "", "protein_xref_intact", "P09581", "protein_xref_iptmnet", "P09581" ], [ "P09581-1", "921", "Tyr", "", "", "protein_xref_iptmnet", "P09581", "protein_xref_iptmnet", "P09581" ], [ "P09581-1", "921", "Tyr", "", "", "protein_xref_pubmed", "9380408", "protein_xref_iptmnet", "P09581" ], [ "P09793-1", "201", "Tyr", "", "", "protein_xref_intact", "P09793", "protein_xref_iptmnet", "P09793" ], [ "P09793-1", "201", "Tyr", "", "", "protein_xref_iptmnet", "P09793", "protein_xref_iptmnet", "P09793" ], [ "P09793-1", "201", "Tyr", "", "", "protein_xref_pubmed", "9712716", "protein_xref_iptmnet", "P09793" ], [ "P09793-1", "218", "Tyr", "", "", "protein_xref_intact", "P09793", "protein_xref_iptmnet", "P09793" ], [ "P09793-1", "218", "Tyr", "", "", "protein_xref_iptmnet", "P09793", "protein_xref_iptmnet", "P09793" ], [ "P09793-1", "218", "Tyr", "", "", "protein_xref_pubmed", "9712716", "protein_xref_iptmnet", "P09793" ] ] }, "readme": "Name\n - Mouse Phosphorylation Sites (iPTMNet)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2020-08-17T16:48:12.211710\n\nModified on\n - 2022-09-26T09:08:12.576310\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_masterlist.csv\n Name: ptm.txt\n URI: https:/data.glygen.org/ln2downloads/iptmnet/2023_10_13/ptm.txt\n Output Subdomain\n Name: mouse_proteoform_phosphorylation_sites_iptmnet.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_proteoform_phosphorylation_sites_iptmnet.csv\n Name: mouse_proteoform_phosphorylation_sites_iptmnet.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_proteoform_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"5215\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"2285\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"13\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"142\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"142\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"9\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"10927\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"5284\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/mouse_proteoform_phosphorylation_sites_iptmnet.csv" }