{ "bcoid": "GLY_000497", "title": "N-linked Byonic Glycan [Human]", "description": "The dataset provides the byonic format of n-linked human glycans (identified by GlyTouCan Ac.). The listed ...", "filename": "glycan_type_n_linked_byonic.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "Byonic" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Homo sapiens", "Mus musculus", "Drosophila melanogaster", "Rattus norvegicus", "Severe acute respiratory syndrome coronavirus 2", "Saccharomyces cerevisiae", "Sus scrofa", "Rattus", "Hepatitis C virus (isolate H)", "Severe acute respiratory syndrome-related coronavirus" ] }, "minitable": { "content": [ [ "G72731KV...", "HexNAc(2)Hex..." ], [ "G42032FN...", "HexNAc(2)Hex..." ] ], "headers": [ "glytoucan_ac...", "byonic..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "byonic" } ], [ "G72731KV", "HexNAc(2)Hex(3)Pent(1) % 1024.359475" ], [ "G42032FN", "HexNAc(2)Hex(3)dHex(1)Pent(1) % 1170.417383" ], [ "G84164DF", "HexNAc(3)Hex(3)dHex(1)Pent(1) % 1373.496756" ], [ "G67486RJ", "HexNAc(4)Hex(3)Sulpho(1) % 1378.432776" ], [ "G41247ZX", "HexNAc(2)Hex(6) % 1378.475686" ], [ "G54168YD", "HexNAc(4)Hex(3)dHex(1)Sulpho(1) % 1524.490684" ], [ "G02860WV", "HexNAc(2)Hex(6)dHex(1) % 1524.533595" ], [ "G92119WG", "HexNAc(4)Hex(4)Sulpho(1) % 1540.485599" ], [ "G31852PQ", "HexNAc(2)Hex(7) % 1540.528510" ], [ "G81920JR", "HexNAc(4)Hex(3)dHex(1)Pent(1) % 1576.576129" ], [ "G63273GB", "HexNAc(5)Hex(3)Sulpho(1) % 1581.512148" ], [ "G10486CT", "HexNAc(4)Hex(5) % 1622.581608" ], [ "G15205QB", "HexNAc(3)Hex(6)Phospho(1) % 1661.521390" ], [ "G45703RF", "HexNAc(1)Hex(9) % 1661.554784" ], [ "G72790NZ", "HexNAc(5)Hex(4) % 1663.608157" ], [ "G13381VV", "HexNAc(2)Hex(6)NeuAc(1) % 1669.571103" ], [ "G86270PX", "HexNAc(4)Hex(4)dHex(1)Sulpho(1) % 1686.543508" ], [ "G27342PV", "HexNAc(4)Hex(4)dHex(1)Phospho(1) % 1686.553024" ], [ "G14191MJ", "HexNAc(2)Hex(7)dHex(1) % 1686.586419" ], [ "G72791KH", "HexNAc(3)Hex(4)dHex(1)NeuAc(1) % 1694.602737" ], [ "G03930BU", "HexNAc(3)Hex(4)dHex(3) % 1695.623138" ], [ "G62765YT", "HexNAc(2)Hex(8) % 1702.581333" ], [ "G69121UK", "HexNAc(5)Hex(3)dHex(1)Sulpho(1) % 1727.570057" ], [ "G03574QJ", "HexNAc(3)Hex(6)dHex(1) % 1727.612968" ], [ "G36923NX", "HexNAc(4)Hex(3)dHex(1)NeuAc(1) % 1735.629286" ], [ "G39411LN", "HexNAc(5)Hex(4)Sulpho(1) % 1743.564972" ], [ "G89430VM", "HexNAc(6)Hex(3)Sulpho(1) % 1784.591521" ], [ "G68318VE", "HexNAc(5)Hex(4)dHex(1) % 1809.666066" ], [ "G04681UD", "HexNAc(1)Hex(10) % 1823.607608" ], [ "G63236GA", "HexNAc(4)Hex(5)dHex(1)Sulpho(1) % 1848.596331" ], [ "G42817NX", "HexNAc(6)Hex(3)Sulpho(2) % 1864.548335" ], [ "G80920RR", "HexNAc(2)Hex(9) % 1864.634157" ], [ "G25079LO", "HexNAc(6)Hex(4) % 1866.687530" ], [ "G50372IH", "HexNAc(3)Hex(6)dHex(2) % 1873.670877" ], [ "G46503DX", "HexNAc(4)Hex(3)NeuAc(2) % 1880.666794" ], [ "G73943YH", "HexNAc(5)Hex(4)dHex(1)Sulpho(1) % 1889.622880" ], [ "G73430PD", "HexNAc(7)Hex(3) % 1907.714079" ], [ "G53874PO", "HexNAc(4)Hex(5)dHex(1)Sulpho(2) % 1928.553146" ], [ "G11145KS", "HexNAc(6)Hex(3)dHex(1)Sulpho(1) % 1930.649430" ], [ "G49018RC", "HexNAc(4)Hex(7) % 1946.687255" ], [ "G86182NS", "HexNAc(5)Hex(4)NeuAc(1) % 1954.703574" ], [ "G62273EM", "HexNAc(5)Hex(4)dHex(1)Sulpho(2) % 1969.579695" ], [ "G85740DB", "HexNAc(5)Hex(5)dHex(1) % 1971.718889" ], [ "G78923UG", "HexNAc(3)Hex(8)Phospho(1) % 1985.627037" ], [ "G60033FS", "HexNAc(5)Hex(6) % 1987.713804" ], [ "G61261ID", "HexNAc(4)Hex(5)NeuAc(1)Sulpho(1) % 1993.633839" ], [ "G63276XU", "HexNAc(6)Hex(3)NeuAc(1) % 1995.730123" ], [ "G59540CB", "HexNAc(6)Hex(3)dHex(2) % 1996.750524" ], [ "G71640LP", "HexNAc(6)Hex(3)dHex(1)Sulpho(2) % 2010.606244" ], [ "G56610MH", "HexNAc(6)Hex(4)dHex(1) % 2012.745438" ], [ "G24255JV", "HexNAc(3)Hex(6)dHex(3) % 2019.728785" ], [ "G83460ZZ", "HexNAc(2)Hex(10) % 2026.686980" ], [ "G43769HG", "HexNAc(6)Hex(5) % 2028.740353" ], [ "G79961MR", "HexNAc(5)Hex(4)NeuAc(1)Sulpho(1) % 2034.660388" ], [ "G62990JB", "HexNAc(5)Hex(5)dHex(1)Phospho(1) % 2051.685220" ], [ "G67367OT", "HexNAc(7)Hex(3)dHex(1) % 2053.771988" ], [ "G08293MJ", "HexNAc(4)Hex(5)dHex(1)NeuAc(1) % 2059.734933" ], [ "G87051GH", "HexNAc(4)Hex(5)dHex(3) % 2060.755335" ], [ "G34029GR", "HexNAc(7)Hex(4) % 2069.766902" ], [ "G62595EF", "HexNAc(4)Hex(7)dHex(1) % 2092.745164" ], [ "G44953PJ", "HexNAc(5)Hex(4)dHex(1)NeuAc(1) % 2100.761483" ], [ "G79874FN", "HexNAc(4)Hex(7)Phospho(2) % 2106.619917" ], [ "G96430BV", "HexNAc(8)Hex(3) % 2110.793451" ], [ "G83646BJ", "HexNAc(5)Hex(5)NeuAc(1) % 2116.756397" ], [ "G44211QA", "HexNAc(5)Hex(6)dHex(1) % 2133.771713" ], [ "G84318LI", "HexNAc(4)Hex(5)dHex(1)NeuAc(1)Sulpho(1) % 2139.691748" ], [ "G33556XM", "HexNAc(6)Hex(3)dHex(1)NeuAc(1) % 2141.788032" ], [ "G93526NJ", "HexNAc(6)Hex(3)dHex(3) % 2142.808433" ], [ "G83973UR", "HexNAc(5)Hex(6)Sulpho(2) % 2147.627433" ], [ "G86800DW", "HexNAc(1)Hex(12) % 2147.713255" ], [ "G14368ET", "HexNAc(5)Hex(7) % 2149.766628" ], [ "G23505EP", "HexNAc(6)Hex(4)NeuAc(1) % 2157.782946" ], [ "G20698EO", "HexNAc(6)Hex(4)dHex(2) % 2158.803347" ], [ "G69364JQ", "HexNAc(6)Hex(5)dHex(1) % 2174.798262" ], [ "G88691YO", "HexNAc(5)Hex(4)dHex(1)NeuAc(1)Sulpho(1) % 2180.718297" ], [ "G58087IP", "HexNAc(2)Hex(11) % 2188.739804" ], [ "G47737VJ", "HexNAc(4)Hex(5)dHex(2)NeuAc(1) % 2205.792842" ], [ "G05933EN", "HexNAc(4)Hex(5)dHex(4) % 2206.813243" ], [ "G06853GH", "HexNAc(7)Hex(4)dHex(1) % 2215.824811" ], [ "G31986NC", "HexNAc(4)Hex(7)NeuAc(1) % 2237.782672" ], [ "G37412TK", "HexNAc(5)Hex(4)NeuAc(2) % 2245.798990" ], [ "G70087PV", "HexNAc(5)Hex(4)dHex(2)NeuAc(1) % 2246.819391" ], [ "G46982GD", "HexNAc(8)Hex(3)dHex(1) % 2256.851360" ], [ "G12580WI", "HexNAc(5)Hex(5)dHex(1)NeuAc(1) % 2262.814306" ] ] }, "readme": "Name\n - N-linked Byonic Glycan [Human]\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2020-05-12T18:50:02.969226\n\nModified on\n - 2022-09-26T09:05:56.436251\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the byonic format of n-linked human glycans (identified by GlyTouCan Ac.). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/. \n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Byonic\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_masterlist.csv\n Name: byonic_glygen_human_nlinked.txt\n URI: https:/data.glygen.org/ln2downloads/glytoucan/gtc_12_09_2023/export/byonic_glygen_human_nlinked.txt\n Output Subdomain\n Name: glycan_type_n_linked_byonic.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_type_n_linked_byonic.csv\n Name: glycan_type_n_linked_byonic.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/glycan_type_n_linked_byonic.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"280\"\n Name: \"byonic\"\n Description: \"byonic format of the glycan description\"\n Unique Values: \"280\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/glycan_type_n_linked_byonic.csv" }