{ "bcoid": "GLY_000391", "title": "Mouse Gene Symbols (UniProtKB)", "description": "The Mouse Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for mouse [taxid:10090] ...", "filename": "mouse_protein_genenames_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Gene Symbols" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q8BH24-1...", "Tm9sf4..." ], [ "Q8BH27-1...", "Megf9..." ] ], "headers": [ "uniprotkb_ca...", "gene_symbol_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_symbol_recommended" }, { "type": "string", "label": "gene_symbol_alternative" }, { "type": "string", "label": "orf_name" } ], [ "Q8BH24-1", "Tm9sf4", "Kiaa0255", "" ], [ "Q8BH27-1", "Megf9", "Egfl5", "" ], [ "Q8BH27-1", "Megf9", "Kiaa0818", "" ], [ "Q8BH26-1", "Lyset", "C14orf109", "" ], [ "Q8BH26-1", "Lyset", "Tmem251", "" ], [ "Q922G0-1", "Slc25a36", "", "" ], [ "Q9DAV8-1", "Prl8a1", "", "" ], [ "O35453-1", "Hpn", "", "" ], [ "Q8VF69-1", "Or2aa1", "Olfr223", "" ], [ "Q9JHR7-1", "Ide", "", "" ], [ "Q8VF63-1", "Or8b35", "Olfr881", "" ], [ "Q63932-1", "Map2k2", "", "" ], [ "Q7TS12-1", "Or5ae2", "Olfr291", "" ], [ "Q9Z2D8-1", "Mbd3", "", "" ], [ "Q8VF66-1", "Or5p50", "Mor204-21", "" ], [ "Q8VF66-1", "Or5p50", "Olfr469", "" ], [ "Q8VF65-1", "Or5p51", "Mor204-22", "" ], [ "Q8VF65-1", "Or5p51", "Olfr470", "" ], [ "Q8VF64-1", "Or8b36", "Olfr883", "" ], [ "Q80T32-1", "Adgrd1", "Gpr133", "" ], [ "B2RXV4-1", "Flvcr1", "Mfsd7b", "" ], [ "P62492-1", "Rab11a", "", "" ], [ "E9Q3P4-1", "Cenpf", "", "" ], [ "P63166-1", "Sumo1", "", "" ], [ "D3YX29-1", "Omt2b", "", "" ], [ "D3YX67-1", "1700017N19Rik", "", "" ], [ "B2RX88-1", "Cspp1", "", "" ], [ "A0A087WRQ3-1", "Trav1", "", "" ], [ "Q9CXG9-1", "Phf19", "Pcl3", "" ], [ "Q07968-1", "F13b", "Cf13b", "" ], [ "A5H0M4-1", "Poteg", "Gsarp1", "" ], [ "Q9CXG3-1", "Ppil4", "", "" ], [ "A6PWV5-1", "Arid3c", "", "" ], [ "B1AQ89-1", "Gm11555", "", "" ], [ "Q8R5F8-1", "Eps8l1", "", "" ], [ "Q9R099-1", "Tbl2", "", "" ], [ "A0A1B0GST8-1", "Gm55978", "", "" ], [ "Q6P549-1", "Inppl1", "", "" ], [ "Q61470-1", "Cd37", "", "" ], [ "O35400-1", "Sult2b1", "", "" ], [ "B1AQ87-1", "Gm14190", "", "" ], [ "B1AQ85-1", "Krtap4-2", "", "" ], [ "A0A1B0GST0-1", "Or51f1", "Olfr566", "" ], [ "Q3UU21-1", "Zpld2", "EG665186", "" ], [ "Q3UU21-1", "Zpld2", "Gm7534", "" ], [ "P01942-1", "Hba", "Hba-a1", "" ], [ "P03899-1", "mt-Nd3", "Nd3", "" ], [ "Q3TC93-1", "Hs1bp3", "", "" ], [ "Q9CWR0-1", "Arhgef25", "", "" ], [ "O35153-1", "Bet1l", "Gs15", "" ], [ "A2RSJ4-1", "Bltp3b", "Uhrf1bp1l", "" ], [ "Q91YE9-1", "Nt5c1b", "", "" ], [ "Q02853-1", "Mmp11", "", "" ], [ "Q8BRF7-1", "Scfd1", "", "" ], [ "Q6DYE8-1", "Enpp3", "", "" ], [ "L0N7N1-1", "Kif14", "", "" ], [ "Q9R092-1", "Hsd17b6", "", "" ], [ "Q9D7Y9-1", "Slx4ip", "2210009G21Rik", "" ], [ "Q9QYH9-1", "Tnfsf14", "Light", "" ], [ "P52479-1", "Usp10", "Kiaa0190", "" ], [ "P52479-1", "Usp10", "Ode-1", "" ], [ "P52479-1", "Usp10", "Uchrp", "" ], [ "A0A0U1RNG7-1", "Kctd14", "", "" ], [ "P02762-1", "Mup6", "", "" ], [ "Q9QYH6-1", "Maged1", "Nrage", "" ], [ "Q3SXJ3-1", "Or4c29", "Olfr1209", "" ], [ "P97427-1", "Crmp1", "", "" ], [ "Q08AU7-1", "Myadml2", "", "" ], [ "P97371-1", "Psme1", "", "" ], [ "Q5EBH1-1", "Rassf5", "Nore1", "" ], [ "Q5EBH1-1", "Rassf5", "Rapl", "" ], [ "Q8CH77-1", "Nav1", "", "" ], [ "Q91XC8-1", "Dap", "", "" ], [ "A0A087WSM5-1", "Gm29049", "", "" ], [ "Q9ESK3-1", "Capn10", "", "" ], [ "Q99JR6-1", "Nmnat3", "", "" ], [ "E9Q295-1", "Gm973", "", "" ], [ "Q3TY65-1", "Ica1l", "", "" ], [ "Q9Z2A9-1", "Ggt5", "", "" ], [ "Q61409-1", "Pde3b", "", "" ], [ "A2AVK5-1", "Or4a15", "Olfr1234", "" ], [ "Q80YU0-1", "Abhd16b", "", "" ], [ "Q61400-1", "Ceacam10", "Cea10", "" ], [ "Q8BTY1-1", "Kyat1", "", "" ] ] }, "readme": "Name\n - Mouse Gene Symbols (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2020-03-15T13:08:14.330050\n\nModified on\n - 2022-09-26T09:05:27.719599\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for mouse [taxid:10090] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature commitees. (for more info - https://www.uniprot.org/help/gene_name). The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB gene symbols for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-mus-musculus.nt\n Output Subdomain\n Name: mouse_protein_genenames_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_genenames_uniprotkb.csv\n Name: mouse_protein_genenames_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_genenames_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"21627\"\n Name: \"gene_symbol_recommended\"\n Description: \"\"The official gene symbol recommended by the Gene Nomenclature Committees like HGNC\"\n Unique Values: \"22071\"\n Name: \"gene_symbol_alternative\"\n Description: \"The alternative gene symbols to the recommended recommeded gene symbols in UniProtKB\"\n Unique Values: \"17822\"\n Name: \"orf_name\"\n Description: \"\"The orf name as a gene name are the names that are temporarily attributed to an open reading frame (ORF) by a sequencing project. This name can be based on a cosmid numbering system\"\n Unique Values: \"242\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/mouse_protein_genenames_uniprotkb.csv" }