{ "bcoid": "GLY_000333", "title": "Mouse Interaction data (MatrixDB)", "description": "The Mouse Interaction data (MatrixDB) dataset contains interaction data between Mouse [taxid:10090] proteins ...", "filename": "mouse_protein_matrixdb.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "MatrixDB" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P01587-1...", "GAG_1..." ], [ "P01587-1...", "GAG_1..." ] ], "headers": [ "uniprotkb_ca...", "matrix_db_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "matrix_db_id" }, { "type": "string", "label": "matrix_db_label" }, { "type": "string", "label": "chebi_id" }, { "type": "string", "label": "gag_interactor_biological_role" }, { "type": "string", "label": "protein_interactor_biological_role" }, { "type": "string", "label": "evidence" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "interaction_type" }, { "type": "string", "label": "source" }, { "type": "string", "label": "source_id" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P01587-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:16027123", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P01587-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:16027123", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "16027123", "glycan_xref_matrixdb", "GAG_1" ], [ "P01587-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:16027123", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P01587-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:16027123", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "16027123", "glycan_xref_matrixdb", "GAG_1" ], [ "P07214-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:19542224", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P07214-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:19542224", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_1", "protein_xref_pubmed", "19542224", "glycan_xref_matrixdb", "GAG_1" ], [ "P12850-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:15183770", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P12850-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:15183770", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "15183770", "glycan_xref_matrixdb", "GAG_1" ], [ "P16092-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:12034712", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P16092-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:12034712", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "12034712", "glycan_xref_matrixdb", "GAG_1" ], [ "P16092-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:12034712", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P16092-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:12034712", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "12034712", "glycan_xref_matrixdb", "GAG_1" ], [ "P16092-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:12034712", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P16092-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:12034712", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "12034712", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10022829", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10022829", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "10022829", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10022829", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10022829", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "10022829", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10893232", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10893232", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "10893232", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10893232", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10893232", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "10893232", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:11304538", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:11304538", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "11304538", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:11304538", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P19137-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:11304538", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "11304538", "glycan_xref_matrixdb", "GAG_1" ], [ "P22777-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:9500522", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P22777-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:9500522", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "9500522", "glycan_xref_matrixdb", "GAG_1" ], [ "P39876-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10900194", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P39876-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10900194", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "10900194", "glycan_xref_matrixdb", "GAG_1" ], [ "P97927-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10893232", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P97927-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10893232", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "10893232", "glycan_xref_matrixdb", "GAG_1" ], [ "P97927-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10893232", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "P97927-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10893232", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "10893232", "glycan_xref_matrixdb", "GAG_1" ], [ "Q9Z0E2-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:15381701", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "Q9Z0E2-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:15381701", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "15381701", "glycan_xref_matrixdb", "GAG_1" ], [ "Q91V88-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:23357641", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "Q91V88-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:23357641", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_1", "protein_xref_pubmed", "23357641", "glycan_xref_matrixdb", "GAG_1" ], [ "Q91V88-1", "GAG_1", "", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "imex:IM-20972", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "Q05793-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:9431988", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "Q05793-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:9431988", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "9431988", "glycan_xref_matrixdb", "GAG_1" ], [ "Q60675-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10022829", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "Q60675-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10022829", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "10022829", "glycan_xref_matrixdb", "GAG_1" ], [ "Q60675-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10022829", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "Q60675-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:10022829", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "10022829", "glycan_xref_matrixdb", "GAG_1" ], [ "Q60675-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:11304538", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "Q60675-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:11304538", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "11304538", "glycan_xref_matrixdb", "GAG_1" ], [ "Q61001-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:11304538", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "glycan_xref_matrixdb", "GAG_1", "glycan_xref_matrixdb", "GAG_1" ], [ "Q61001-1", "GAG_1", "matrixdb:Heparin(short label)", "CHEBI:28304", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:11304538", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_1", "protein_xref_pubmed", "11304538", "glycan_xref_matrixdb", "GAG_1" ], [ "P16092-1", "GAG_2", "matrixdb:Heparan sulfate(short label)", "CHEBI:28815", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:12034712", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_2", "glycan_xref_matrixdb", "GAG_2", "glycan_xref_matrixdb", "GAG_2" ], [ "P16092-1", "GAG_2", "matrixdb:Heparan sulfate(short label)", "CHEBI:28815", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:12034712", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_2", "protein_xref_pubmed", "12034712", "glycan_xref_matrixdb", "GAG_2" ], [ "Q91V88-1", "GAG_2", "matrixdb:Heparan sulfate(short label)", "CHEBI:28815", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:23357641", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_2", "glycan_xref_matrixdb", "GAG_2", "glycan_xref_matrixdb", "GAG_2" ], [ "Q91V88-1", "GAG_2", "matrixdb:Heparan sulfate(short label)", "CHEBI:28815", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:23357641", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_2", "protein_xref_pubmed", "23357641", "glycan_xref_matrixdb", "GAG_2" ], [ "Q91V88-1", "GAG_2", "", "CHEBI:28815", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "imex:IM-20972", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_2", "glycan_xref_matrixdb", "GAG_2", "glycan_xref_matrixdb", "GAG_2" ], [ "P07214-1", "GAG_3", "matrixdb:Dermatan Sulfate(short label)", "CHEBI:18376", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:19542224", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_3", "glycan_xref_matrixdb", "GAG_3", "glycan_xref_matrixdb", "GAG_3" ], [ "P07214-1", "GAG_3", "matrixdb:Dermatan Sulfate(short label)", "CHEBI:18376", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:19542224", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_3", "protein_xref_pubmed", "19542224", "glycan_xref_matrixdb", "GAG_3" ], [ "P36363-1", "GAG_6", "matrixdb:Chondroitin Sulfate D(short label)", "CHEBI:37397", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:24447999", "G46732TY", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_6", "glycan_xref_matrixdb", "GAG_6", "glycan_xref_matrixdb", "GAG_6" ], [ "P36363-1", "GAG_6", "matrixdb:Chondroitin Sulfate D(short label)", "CHEBI:37397", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:24447999", "G46732TY", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_6", "protein_xref_pubmed", "24447999", "glycan_xref_matrixdb", "GAG_6" ], [ "P36363-1", "GAG_6", "", "CHEBI:37397", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "imex:IM-22964", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_6", "glycan_xref_matrixdb", "GAG_6", "glycan_xref_matrixdb", "GAG_6" ], [ "P37237-1", "GAG_6", "matrixdb:Chondroitin Sulfate D(short label)", "CHEBI:37397", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:24447999", "G46732TY", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_6", "glycan_xref_matrixdb", "GAG_6", "glycan_xref_matrixdb", "GAG_6" ], [ "P37237-1", "GAG_6", "matrixdb:Chondroitin Sulfate D(short label)", "CHEBI:37397", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:24447999", "G46732TY", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_6", "protein_xref_pubmed", "24447999", "glycan_xref_matrixdb", "GAG_6" ], [ "P37237-1", "GAG_6", "", "CHEBI:37397", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "imex:IM-22964", "", "Glycosaminoglycan", "PubMed", "matrixdb:GAG_6", "glycan_xref_matrixdb", "GAG_6", "glycan_xref_matrixdb", "GAG_6" ], [ "P61148-1", "GAG_6", "matrixdb:Chondroitin Sulfate D(short label)", "CHEBI:37397", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:24447999", "G46732TY", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_6", "glycan_xref_matrixdb", "GAG_6", "glycan_xref_matrixdb", "GAG_6" ], [ "P61148-1", "GAG_6", "matrixdb:Chondroitin Sulfate D(short label)", "CHEBI:37397", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:24447999", "G46732TY", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_6", "protein_xref_pubmed", "24447999", "glycan_xref_matrixdb", "GAG_6" ], [ "P61148-1", "GAG_6", "", "CHEBI:37397", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "imex:IM-22964", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_6", "glycan_xref_matrixdb", "GAG_6", "glycan_xref_matrixdb", "GAG_6" ], [ "Q91V88-1", "GAG_7", "matrixdb:Chondroitin Sulfate E(short label)", "CHEBI:52562", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:23357641", "G03536SO", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_7", "glycan_xref_matrixdb", "GAG_7", "glycan_xref_matrixdb", "GAG_7" ], [ "Q91V88-1", "GAG_7", "matrixdb:Chondroitin Sulfate E(short label)", "CHEBI:52562", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "pubmed:23357641", "G03536SO", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_7", "protein_xref_pubmed", "23357641", "glycan_xref_matrixdb", "GAG_7" ], [ "Q91V88-1", "GAG_7", "", "CHEBI:52562", "psi-mi:MI:0499(unspecified role)", "psi-mi:MI:0499(unspecified role)", "imex:IM-20972", "", "Glycosaminoglycan", "MatrixDB", "matrixdb:GAG_7", "glycan_xref_matrixdb", "GAG_7", "glycan_xref_matrixdb", "GAG_7" ] ] }, "readme": "Name\n - Mouse Interaction data (MatrixDB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2020-02-10T14:02:01.224476\n\nModified on\n - 2022-09-26T09:05:27.711895\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Sylvie Ricard-Blum [sylvie.ricard-blum@univ-lyon1.fr]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Interaction data (MatrixDB) dataset contains interaction data between Mouse [taxid:10090] proteins and Glycosaminoglycans (GAGs) from MatrixDB database (http://matrixdb.univ-lyon1.fr/ ;PMID:19147664). If you use this dataset please provide proper attribution to MatrixDB and GlyGen.\n\nDescription Domain\n Keywords\n - protein-GAGs interaction\n - MatrixDB\n\n Pipeline Steps\n - Step-1: The tab file (matrixdb_CORE.tab (labeled as \u201cCore MatrixDB dataset as PSI-MI TAB 2.7 file\u201d) was downloaded directly from the MatrixDB database. Following rules were applied to extract specific data from the file. The rules were also verified by the author. 1)Rule 1: where column \"Alt. ID(s) interactor A\" has \"GAG\" AND column \"ID(s) interactor B\" has \"uniprotkb\" as prefixs. 2)Rule 2: where column \"Alt. ID(s) interactor B\" has \"GAG\" AND column \"#ID(s) interactor A\" has \"uniprotkb\" as prefixes. 3)for Rule 1: 3a) Add values from column \"Biological role(s) interactor A\" to new column \"gag_interactor_biological_role\". 3b)Add from column \"Biological role(s) interactor B\" to new column \"protein_interactor_biological_role\".3c)Add from column \"Publication Identifier(s)\" to new column \"evidence\". 4)for Rule 2: 4a)Add values from\"Biological role(s) interactor A\" to column \"protein_interactor_biological_role\". 4b)Add from \"Biological role(s) interactor B\" to column gag_interactor_biological_role\". 4c)Add from \"Publication Identifier(s)\" to column \"evidence\". 5) finally the UniProtKB accessions were mapped to UniProtKB canonical accessions based on the GlyGen protein master list (https://data.glygen.org/GLYDS000001).\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: matrix_db_label.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/misc/matrix_db_label.csv\n Name: matrixdb.tsv\n URI: https:/data.glygen.org/ln2downloads/glytoucan/gtc_08_17_2023/export/matrixdb.tsv\n Name: matrixdb_CORE.tab\n URI: https:/data.glygen.org/ln2downloads/matrixdb/2023_10_10/matrixdb_CORE.tab\n Output Subdomain\n Name: mouse_protein_matrixdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_matrixdb.csv\n Name: mouse_protein_matrixdb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_matrixdb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"16\"\n Name: \"matrix_db_id\"\n Description: \"Entity identifier from MatrixDB database \"\n Unique Values: \"5\"\n Name: \"matrix_db_label\"\n Description: \"Name of the entity associated with a MatrixDB ID\"\n Unique Values: \"6\"\n Name: \"chebi_id\"\n Description: \"Entity identifier from ChEBI database \"\n Unique Values: \"5\"\n Name: \"gag_interactor_biological_role\"\n Description: \"Biological role of the Glycosylaminoglycan from MatrixDB\"\n Unique Values: \"1\"\n Name: \"protein_interactor_biological_role\"\n Description: \"Biological role of the protein from MatrixDB\"\n Unique Values: \"1\"\n Name: \"evidence\"\n Description: \"NCBI PubMed Id (PMID) or DOI (Digital Object Identifier) as evidence for the entry/annotation\"\n Unique Values: \"15\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"3\"\n Name: \"interaction_type\"\n Description: \"Type of interaction\"\n Unique Values: \"1\"\n Name: \"source\"\n Description: \"Source for the data\"\n Unique Values: \"2\"\n Name: \"source_id\"\n Description: \"source database id of the species annoation for the glycan.\"\n Unique Values: \"5\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"18\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"5\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/mouse_protein_matrixdb.csv" }