{ "bcoid": "GLY_000273", "title": "Rat UniProtKB Xref RGD", "description": "The Rat [taxid:10116] UniprotKB Xref RefSeq contains rat UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_rgd.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Rgd cross-references" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q5RJZ1-1...", "protein_xref..." ], [ "F1LVT6-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q5RJZ1-1", "protein_xref_rgd", "1306721", "Rtel1" ], [ "F1LVT6-1", "protein_xref_rgd", "1310275", "Senp1" ], [ "Q0HA29-1", "protein_xref_rgd", "1307331", "Nmnat2" ], [ "Q9WVK3-1", "protein_xref_rgd", "70925", "Pecr" ], [ "A0A0G2JVG5-1", "protein_xref_rgd", "7572423", "LOC102552378" ], [ "A0A0G2JVG6-1", "protein_xref_rgd", "1591403", "Zfp59" ], [ "P30938-1", "protein_xref_rgd", "3765", "Sstr5" ], [ "P32301-1", "protein_xref_rgd", "2703", "Glp1r" ], [ "A0A8I5ZR95-1", "protein_xref_rgd", "1310505", "Osbp2" ], [ "A0A8I5Y5Z6-1", "protein_xref_rgd", "1359573", "Xrcc4" ], [ "A0A0G2K069-1", "protein_xref_rgd", "2373", "Col11a2" ], [ "A0A8I6B3C5-1", "protein_xref_rgd", "620818", "Herpud1" ], [ "A0A8I5Y4X4-1", "protein_xref_rgd", "1359489", "Nub1" ], [ "P30937-1", "protein_xref_rgd", "3764", "Sstr4" ], [ "O35152-1", "protein_xref_rgd", "71051", "Bet1l" ], [ "P30936-1", "protein_xref_rgd", "620308", "Sstr3" ], [ "O35158-1", "protein_xref_rgd", "708433", "Cdon" ], [ "F7FI04-1", "protein_xref_rgd", "1305782", "Snx10" ], [ "P02761-1", "protein_xref_rgd", "708506", "LOC259246" ], [ "Q9QYH1-1", "protein_xref_rgd", "620016", "Mpp4" ], [ "P02764-1", "protein_xref_rgd", "67390", "Orm1" ], [ "P02767-1", "protein_xref_rgd", "3916", "Ttr" ], [ "D4A4W8-1", "protein_xref_rgd", "1310141", "Tbxt" ], [ "D4A4W9-1", "protein_xref_rgd", "1595454", "Rpl34-ps1" ], [ "D4A4W0-1", "protein_xref_rgd", "1334154", "Or5b95" ], [ "D4A4W1-1", "protein_xref_rgd", "1596692", "Fam174b" ], [ "D4A4W2-1", "protein_xref_rgd", "1562382", "Slc47a2" ], [ "F7EN52-1", "protein_xref_rgd", "1306605", "Cyp46a1" ], [ "D4A4W4-1", "protein_xref_rgd", "1307206", "Ephx3" ], [ "D4A4W5-1", "protein_xref_rgd", "1565126", "Atp10b" ], [ "D4A4W6-1", "protein_xref_rgd", "1585290", "Slirp" ], [ "D4A4W7-1", "protein_xref_rgd", "1586369", "Mgarp" ], [ "P07727-1", "protein_xref_rgd", "2704", "Glra1" ], [ "D4A6Q6-1", "protein_xref_rgd", "1310969", "Ino80" ], [ "A0A8I6ABX7-1", "protein_xref_rgd", "7532496", "LOC102552128" ], [ "P01237-1", "protein_xref_rgd", "3403", "Prl" ], [ "A0A8I6AEL7-1", "protein_xref_rgd", "15003757", "AABR07038788.1" ], [ "P01230-1", "protein_xref_rgd", "3006", "Lhb" ], [ "Q9EP80-1", "protein_xref_rgd", "69437", "Pick1" ], [ "P09006-1", "protein_xref_rgd", "3747", "Serpina3n" ], [ "A0A8I5ZLJ0-1", "protein_xref_rgd", "150344059", "ENSRNOG00000068876" ], [ "Q6AYS7-1", "protein_xref_rgd", "2030", "Acy1" ], [ "Q9JHY8-1", "protein_xref_rgd", "621424", "Lig1" ], [ "Q9JHY1-1", "protein_xref_rgd", "621842", "F11r" ], [ "Q9JHY2-1", "protein_xref_rgd", "620716", "Sfxn3" ], [ "Q9JHY7-1", "protein_xref_rgd", "70499", "Birc5" ], [ "A0JPQ1-1", "protein_xref_rgd", "1587626", "LOC688553" ], [ "Q9WU49-1", "protein_xref_rgd", "708415", "Carhsp1" ], [ "F1MAA4-1", "protein_xref_rgd", "1307977", "Atp13a2" ], [ "P30277-1", "protein_xref_rgd", "2291", "Ccnb1" ], [ "D3ZKN4-1", "protein_xref_rgd", "1563506", "Whamm" ], [ "Q66HR5-1", "protein_xref_rgd", "619812", "Calcoco1" ], [ "A0A8L2QVZ0-1", "protein_xref_rgd", "41253011", "LOC120102993" ], [ "A0A8I6GF85-1", "protein_xref_rgd", "150344736", "ENSRNOG00000064148" ], [ "A0A8I6GIM3-1", "protein_xref_rgd", "1306192", "Ntpcr" ], [ "A0A8I6GF81-1", "protein_xref_rgd", "150342813", "ENSRNOG00000069163" ], [ "Q05474-1", "protein_xref_rgd", "61938", "Fau" ], [ "Q5XI22-1", "protein_xref_rgd", "1359366", "Acat2" ], [ "P83748-1", "protein_xref_rgd", "735142", "Prss30" ], [ "P18508-1", "protein_xref_rgd", "61966", "Gabrg2" ], [ "P04757-1", "protein_xref_rgd", "2345", "Chrna3" ], [ "Q8R512-1", "protein_xref_rgd", "620769", "Ubxn11" ], [ "A0A8I5Y6V0-1", "protein_xref_rgd", "150344353", "ENSRNOG00000066316" ], [ "E9PTQ3-1", "protein_xref_rgd", "727820", "Adam28" ], [ "A0A8I5Y6V4-1", "protein_xref_rgd", "1565796", "Msantd1" ], [ "P84083-1", "protein_xref_rgd", "621278", "Arf5" ], [ "Q5XI32-1", "protein_xref_rgd", "1359099", "Capzb" ], [ "Q9JJ05-1", "protein_xref_rgd", "621105", "C1galt1" ], [ "Q4KM62-1", "protein_xref_rgd", "1305624", "Palmd" ], [ "P47709-1", "protein_xref_rgd", "620073", "Rph3a" ], [ "A0A8I6AER7-1", "protein_xref_rgd", "15003490", "AABR07006111.1" ], [ "B0BMY7-1", "protein_xref_rgd", "1591460", "Twf2" ], [ "A0A8I5ZRF2-1", "protein_xref_rgd", "1304950", "Il21r" ], [ "Q5XIT6-1", "protein_xref_rgd", "1359392", "Desi2" ], [ "D3ZGN2-1", "protein_xref_rgd", "1308021", "Cpne5" ], [ "Q9Z0V5-1", "protein_xref_rgd", "620043", "Prdx4" ], [ "A0A0G2JYZ1-1", "protein_xref_rgd", "1311661", "Ttbk2" ], [ "Q4V8C3-1", "protein_xref_rgd", "1306374", "Eml1" ], [ "A0A8I6AVR1-1", "protein_xref_rgd", "1585184", "Sms-ps2" ], [ "D3ZV60-1", "protein_xref_rgd", "1307115", "Cenpe" ], [ "Q66H84-1", "protein_xref_rgd", "1304980", "Mapkapk3" ], [ "Q6P6V6-1", "protein_xref_rgd", "735149", "Gpr108" ], [ "P0CAX5-1", "protein_xref_rgd", "1563435", "Ophn1" ], [ "Q9Z0N7-1", "protein_xref_rgd", "621503", "Kcnq1" ] ] }, "readme": "Name\n - Rat UniProtKB Xref RGD\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2019-09-06T14:06:38.999441\n\nModified on\n - 2022-09-26T09:04:47.888755\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat [taxid:10116] UniprotKB Xref RefSeq contains rat UniProtKB canonical accessions cross-referenced to Rat Genome Database (RGD) accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. f you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n - The Rat Genome Database (RGD) is the premier site for genetic, genomic, phenotype, and disease data generated from rat research\n\nDescription Domain\n Keywords\n - protein accessions\n - RefSeq\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Rat Genome Database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_xref_rgd.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_xref_rgd.csv\n Name: rat_protein_xref_rgd.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_xref_rgd.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"22807\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"23831\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"23923\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/rat_protein_xref_rgd.csv" }