{
    "bcoid": "GLY_000266",
    "title": "Rat UniProtKB Xref Bgee",
    "description": "The Rat UniProtKB Xref Bgee dataset contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...",
    "filename": "rat_protein_xref_bgee.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Bgee cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q5RJZ1-1...",
                "protein_xref..."
            ],
            [
                "Q9WVK3-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "Q5RJZ1-1",
                "protein_xref_bgee",
                "ENSRNOG00000027513",
                "Expressed in thymus and 19 other tissues"
            ],
            [
                "Q9WVK3-1",
                "protein_xref_bgee",
                "ENSRNOG00000055295",
                "Expressed in liver and 19 other tissues"
            ],
            [
                "A0A0G2JVG5-1",
                "protein_xref_bgee",
                "ENSRNOG00000030948",
                "Expressed in testis"
            ],
            [
                "A0A0G2JVG6-1",
                "protein_xref_bgee",
                "ENSRNOG00000053366",
                "Expressed in cerebellum and 13 other tissues"
            ],
            [
                "A0A8I5Y5Z6-1",
                "protein_xref_bgee",
                "ENSRNOG00000029966",
                "Expressed in heart and 20 other tissues"
            ],
            [
                "A0A8I5Y4X4-1",
                "protein_xref_bgee",
                "ENSRNOG00000009282",
                "Expressed in cerebellum and 20 other tissues"
            ],
            [
                "P30937-1",
                "protein_xref_bgee",
                "ENSRNOG00000004641",
                "Expressed in lung and 5 other tissues"
            ],
            [
                "P30936-1",
                "protein_xref_bgee",
                "ENSRNOG00000007332",
                "Expressed in thymus and 13 other tissues"
            ],
            [
                "P02767-1",
                "protein_xref_bgee",
                "ENSRNOG00000016275",
                "Expressed in liver and 19 other tissues"
            ],
            [
                "D4A4W8-1",
                "protein_xref_bgee",
                "ENSRNOG00000012229",
                "Expressed in lung and 3 other tissues"
            ],
            [
                "D4A4W9-1",
                "protein_xref_bgee",
                "ENSRNOG00000038045",
                "Expressed in thymus and 19 other tissues"
            ],
            [
                "D4A4W1-1",
                "protein_xref_bgee",
                "ENSRNOG00000012369",
                "Expressed in lung and 17 other tissues"
            ],
            [
                "D4A4W2-1",
                "protein_xref_bgee",
                "ENSRNOG00000038055",
                "Expressed in testis and 2 other tissues"
            ],
            [
                "F7EN52-1",
                "protein_xref_bgee",
                "ENSRNOG00000007147",
                "Expressed in frontal cortex and 16 other tissues"
            ],
            [
                "D4A4W4-1",
                "protein_xref_bgee",
                "ENSRNOG00000027319",
                "Expressed in esophagus and 8 other tissues"
            ],
            [
                "D4A4W5-1",
                "protein_xref_bgee",
                "ENSRNOG00000003781",
                "Expressed in duodenum and 9 other tissues"
            ],
            [
                "D4A4W6-1",
                "protein_xref_bgee",
                "ENSRNOG00000012314",
                "Expressed in quadriceps femoris and 20 other tissues"
            ],
            [
                "D4A4W7-1",
                "protein_xref_bgee",
                "ENSRNOG00000011923",
                "Expressed in ovary and 13 other tissues"
            ],
            [
                "P01237-1",
                "protein_xref_bgee",
                "ENSRNOG00000017374",
                "Expressed in Ammon's horn"
            ],
            [
                "P01230-1",
                "protein_xref_bgee",
                "ENSRNOG00000047040",
                "Expressed in testis and 15 other tissues"
            ],
            [
                "Q9EP80-1",
                "protein_xref_bgee",
                "ENSRNOG00000011507",
                "Expressed in pancreas and 20 other tissues"
            ],
            [
                "Q9JHY1-1",
                "protein_xref_bgee",
                "ENSRNOG00000004414",
                "Expressed in lung and 19 other tissues"
            ],
            [
                "Q9JHY2-1",
                "protein_xref_bgee",
                "ENSRNOG00000015442",
                "Expressed in stomach and 20 other tissues"
            ],
            [
                "Q9WU49-1",
                "protein_xref_bgee",
                "ENSRNOG00000002610",
                "Expressed in liver and 19 other tissues"
            ],
            [
                "F1MAA4-1",
                "protein_xref_bgee",
                "ENSRNOG00000008052",
                "Expressed in frontal cortex and 20 other tissues"
            ],
            [
                "Q5XI22-1",
                "protein_xref_bgee",
                "ENSRNOG00000013975",
                "Expressed in duodenum and 19 other tissues"
            ],
            [
                "P83748-1",
                "protein_xref_bgee",
                "ENSRNOG00000033266",
                "Expressed in duodenum and 9 other tissues"
            ],
            [
                "P18508-1",
                "protein_xref_bgee",
                "ENSRNOG00000003241",
                "Expressed in frontal cortex and 2 other tissues"
            ],
            [
                "P04757-1",
                "protein_xref_bgee",
                "ENSRNOG00000013829",
                "Expressed in colon and 11 other tissues"
            ],
            [
                "Q9R1N3-1",
                "protein_xref_bgee",
                "ENSRNOG00000005957",
                "Expressed in duodenum and 18 other tissues"
            ],
            [
                "D3ZIY3-1",
                "protein_xref_bgee",
                "ENSRNOG00000010084",
                "Expressed in stomach and 19 other tissues"
            ],
            [
                "D3ZIY7-1",
                "protein_xref_bgee",
                "ENSRNOG00000020641",
                "Expressed in quadriceps femoris and 10 other tissues"
            ],
            [
                "A0A8I6GKG1-1",
                "protein_xref_bgee",
                "ENSRNOG00000031127",
                "Expressed in thymus and 20 other tissues"
            ],
            [
                "D3ZSP7-1",
                "protein_xref_bgee",
                "ENSRNOG00000001682",
                "Expressed in Ammon's horn and 19 other tissues"
            ],
            [
                "D3ZFP5-1",
                "protein_xref_bgee",
                "ENSRNOG00000038422",
                "Expressed in duodenum and 13 other tissues"
            ],
            [
                "D3ZFP4-1",
                "protein_xref_bgee",
                "ENSRNOG00000012543",
                "Expressed in spleen and 19 other tissues"
            ],
            [
                "D3ZFP7-1",
                "protein_xref_bgee",
                "ENSRNOG00000024712",
                "Expressed in liver and 12 other tissues"
            ],
            [
                "D3ZFP6-1",
                "protein_xref_bgee",
                "ENSRNOG00000015520",
                "Expressed in thymus and 9 other tissues"
            ],
            [
                "D3ZFP1-1",
                "protein_xref_bgee",
                "ENSRNOG00000026328",
                "Expressed in frontal cortex and 2 other tissues"
            ],
            [
                "D4A131-1",
                "protein_xref_bgee",
                "ENSRNOG00000020659",
                "Expressed in heart and 20 other tissues"
            ],
            [
                "A0A1W2Q641-1",
                "protein_xref_bgee",
                "ENSRNOG00000001992",
                "Expressed in Ammon's horn and 19 other tissues"
            ],
            [
                "P09875-1",
                "protein_xref_bgee",
                "ENSRNOG00000001990",
                "Expressed in duodenum and 11 other tissues"
            ],
            [
                "A0A1W2Q6J4-1",
                "protein_xref_bgee",
                "ENSRNOG00000053406",
                "Expressed in testis and 20 other tissues"
            ],
            [
                "D4A138-1",
                "protein_xref_bgee",
                "ENSRNOG00000031593",
                "Expressed in ovary and 7 other tissues"
            ],
            [
                "F1LWI7-1",
                "protein_xref_bgee",
                "ENSRNOG00000039305",
                "Expressed in ovary and 1 other tissue"
            ],
            [
                "A6KSB3-1",
                "protein_xref_bgee",
                "ENSRNOG00000033466",
                "Expressed in liver"
            ],
            [
                "F1LWI8-1",
                "protein_xref_bgee",
                "ENSRNOG00000001342",
                "Expressed in testis and 12 other tissues"
            ],
            [
                "D3ZCS5-1",
                "protein_xref_bgee",
                "ENSRNOG00000024420",
                "Expressed in testis and 11 other tissues"
            ],
            [
                "D3ZCS4-1",
                "protein_xref_bgee",
                "ENSRNOG00000027894",
                "Expressed in jejunum and 16 other tissues"
            ],
            [
                "D3ZCS6-1",
                "protein_xref_bgee",
                "ENSRNOG00000028121",
                "Expressed in duodenum and 3 other tissues"
            ],
            [
                "D3ZCS1-1",
                "protein_xref_bgee",
                "ENSRNOG00000003888",
                "Expressed in stomach and 7 other tissues"
            ],
            [
                "D3ZCS3-1",
                "protein_xref_bgee",
                "ENSRNOG00000012406",
                "Expressed in cerebellum and 19 other tissues"
            ],
            [
                "D3ZCS2-1",
                "protein_xref_bgee",
                "ENSRNOG00000003870",
                "Expressed in esophagus and 20 other tissues"
            ],
            [
                "D3ZCS9-1",
                "protein_xref_bgee",
                "ENSRNOG00000048275",
                "Expressed in liver and 18 other tissues"
            ],
            [
                "A0A0G2KAH3-1",
                "protein_xref_bgee",
                "ENSRNOG00000016181",
                "Expressed in heart and 2 other tissues"
            ],
            [
                "A0A8I6ACL3-1",
                "protein_xref_bgee",
                "ENSRNOG00000026044",
                "Expressed in quadriceps femoris and 17 other tissues"
            ],
            [
                "D3ZUF0-1",
                "protein_xref_bgee",
                "ENSRNOG00000042445",
                "Expressed in jejunum and 17 other tissues"
            ],
            [
                "D3ZUF1-1",
                "protein_xref_bgee",
                "ENSRNOG00000004614",
                "Expressed in esophagus and 9 other tissues"
            ],
            [
                "A0A8I6A636-1",
                "protein_xref_bgee",
                "ENSRNOG00000014003",
                "Expressed in ovary and 11 other tissues"
            ],
            [
                "A0A0G2JVP1-1",
                "protein_xref_bgee",
                "ENSRNOG00000007864",
                "Expressed in ileum and 19 other tissues"
            ],
            [
                "Q6P5P3-1",
                "protein_xref_bgee",
                "ENSRNOG00000019464",
                "Expressed in thymus and 20 other tissues"
            ],
            [
                "D3ZXJ0-1",
                "protein_xref_bgee",
                "ENSRNOG00000023643",
                "Expressed in frontal cortex and 19 other tissues"
            ],
            [
                "D3ZB41-1",
                "protein_xref_bgee",
                "ENSRNOG00000015322",
                "Expressed in thymus and 19 other tissues"
            ],
            [
                "A0A8I5ZXW0-1",
                "protein_xref_bgee",
                "ENSRNOG00000042201",
                "Expressed in testis and 20 other tissues"
            ],
            [
                "D3ZXJ5-1",
                "protein_xref_bgee",
                "ENSRNOG00000032723",
                "Expressed in duodenum and 19 other tissues"
            ],
            [
                "F1LP13-1",
                "protein_xref_bgee",
                "ENSRNOG00000009419",
                "Expressed in frontal cortex and 19 other tissues"
            ],
            [
                "Q01956-1",
                "protein_xref_bgee",
                "ENSRNOG00000019959",
                "Expressed in cerebellum and 9 other tissues"
            ],
            [
                "A0A0G2JVZ3-1",
                "protein_xref_bgee",
                "ENSRNOG00000029659",
                "Expressed in testis and 13 other tissues"
            ],
            [
                "A0A0G2JVZ2-1",
                "protein_xref_bgee",
                "ENSRNOG00000055188",
                "Expressed in jejunum and 4 other tissues"
            ],
            [
                "A0A0G2JVZ0-1",
                "protein_xref_bgee",
                "ENSRNOG00000059084",
                "Expressed in jejunum and 11 other tissues"
            ],
            [
                "A0A0G2JVZ7-1",
                "protein_xref_bgee",
                "ENSRNOG00000057957",
                "Expressed in esophagus and 11 other tissues"
            ],
            [
                "F1LZX9-1",
                "protein_xref_bgee",
                "ENSRNOG00000004912",
                "Expressed in adult mammalian kidney and 18 other tissues"
            ],
            [
                "P59926-1",
                "protein_xref_bgee",
                "ENSRNOG00000051688",
                "Expressed in pancreas and 13 other tissues"
            ],
            [
                "Q9QYH7-1",
                "protein_xref_bgee",
                "ENSRNOG00000010349",
                "Expressed in stomach and 18 other tissues"
            ],
            [
                "D3ZT68-1",
                "protein_xref_bgee",
                "ENSRNOG00000011548",
                "Expressed in quadriceps femoris and 8 other tissues"
            ],
            [
                "Q9EPW1-1",
                "protein_xref_bgee",
                "ENSRNOG00000014448",
                "Expressed in thymus and 20 other tissues"
            ],
            [
                "D3ZT64-1",
                "protein_xref_bgee",
                "ENSRNOG00000060707",
                "Expressed in skeletal muscle tissue and 18 other tissues"
            ],
            [
                "D3ZT66-1",
                "protein_xref_bgee",
                "ENSRNOG00000050293",
                "Expressed in spleen"
            ],
            [
                "P70563-1",
                "protein_xref_bgee",
                "ENSRNOG00000017420",
                "Expressed in pancreas and 19 other tissues"
            ],
            [
                "D4AE80-1",
                "protein_xref_bgee",
                "ENSRNOG00000016015",
                "Expressed in thymus and 20 other tissues"
            ],
            [
                "D4AE81-1",
                "protein_xref_bgee",
                "ENSRNOG00000016011",
                "Expressed in heart and 19 other tissues"
            ],
            [
                "D4AE82-1",
                "protein_xref_bgee",
                "ENSRNOG00000016737",
                "Expressed in frontal cortex and 7 other tissues"
            ],
            [
                "D4AE85-1",
                "protein_xref_bgee",
                "ENSRNOG00000010457",
                "Expressed in frontal cortex and 18 other tissues"
            ],
            [
                "A0A0G2K8J8-1",
                "protein_xref_bgee",
                "ENSRNOG00000058790",
                "Expressed in brain and 19 other tissues"
            ]
        ]
    },
    "readme": "Name\n   - Rat UniProtKB Xref Bgee\n\nVersion\n   - v-2.3.1\n\nCreated on\n  - 2019-09-06T14:06:38.992721\n\nModified on\n   - 2022-09-26T09:04:48.023514\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat UniProtKB Xref Bgee dataset contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n   -  Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n   Keywords\n   - gene expression\n   - Bgee\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_xref_bgee.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_xref_bgee.csv\n      Name: rat_protein_xref_bgee.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_xref_bgee.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"17499\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"17751\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"484\"",
    "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/rat_protein_xref_bgee.csv"
}