{ "bcoid": "GLY_000265", "title": "Rat Protein Alternative Name (UniProtKB)", "description": "The Rat Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for rat [taxid:10116] ...", "filename": "rat_protein_altnames.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Protein" ], "tag": [ "Protein Alternative Names" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q0HA29-1...", "Nicotinate-n..." ], [ "Q0HA29-1...", "Nicotinamide..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q0HA29-1", "Nicotinate-nucleotide adenylyltransferase 2", "NaMN adenylyltransferase 2", "" ], [ "Q0HA29-1", "Nicotinamide mononucleotide adenylyltransferase 2", "NMN adenylyltransferase 2", "" ], [ "O35152-1", "Golgi SNARE with a size of 15 kDa", "GOS-15", "" ], [ "O35152-1", "Golgi SNARE with a size of 15 kDa", "GS15", "" ], [ "O35152-1", "Vesicle transport protein GOS15", "", "" ], [ "P30936-1", "SSR-28", "", "" ], [ "P02761-1", "Allergen Rat n I", "", "" ], [ "P02761-1", "alpha-2u globulin PGCL1", "", "" ], [ "P02761-1", "Alpha(2)-euglobulin", "", "" ], [ "P02761-1", "Alpha-2u-globulin", "", "" ], [ "Q9QYH1-1", "Discs large homolog 6", "rDLG6", "" ], [ "P02764-1", "Orosomucoid", "OMD", "" ], [ "P02767-1", "Prealbumin", "", "" ], [ "P02767-1", "TBPA", "", "" ], [ "D4A4W9-1", "60S ribosomal protein L34", "", "" ], [ "P01230-1", "Luteinizing hormone subunit beta", "LH-B", "" ], [ "P01230-1", "Luteinizing hormone subunit beta", "LSH-B", "" ], [ "P01230-1", "Luteinizing hormone subunit beta", "LSH-beta", "" ], [ "P09006-1", "Serine protease inhibitor 3", "SPI-3", "" ], [ "P09006-1", "Contrapsin-like protease inhibitor 6", "", "" ], [ "P09006-1", "CPI-26", "", "" ], [ "P09006-1", "SPI-2.2", "", "" ], [ "Q9JHY8-1", "DNA ligase I", "", "" ], [ "Q9JHY8-1", "Polydeoxyribonucleotide synthase [ATP] 1", "", "" ], [ "Q9JHY1-1", "Junctional adhesion molecule 1", "JAM-1", "" ], [ "Q9JHY7-1", "Apoptosis inhibitor survivin", "", "" ], [ "Q9WU49-1", "Calcium-regulated heat-stable protein of 24 kDa", "CRHSP-24", "" ], [ "Q9R1N3-1", "Solute carrier family 4 member 7", "", "" ], [ "Q9R1N3-1", "NBC-like protein", "", "" ], [ "Q9R1N3-1", "Electroneutral sodium bicarbonate cotransporter 1", "", "" ], [ "D3ZIY7-1", "40S ribosomal protein S2", "", "" ], [ "D3ZSP7-1", "TPR repeat protein D", "", "" ], [ "D3ZSP7-1", "RING-type E3 ubiquitin transferase TTC3", "", "" ], [ "A0A8I5Y0D9-1", "ATPase inhibitor, mitochondrial", "", "" ], [ "Q9QYH7-1", "Growth hormone secretagogue", "", "" ], [ "Q9QYH7-1", "Growth hormone-releasing peptide", "", "" ], [ "Q9QYH7-1", "Motilin-related peptide", "", "" ], [ "Q67ER9-1", "Taste receptor type 2 member 32", "T2R32", "" ], [ "P97613-1", "Pituitary tumor-transforming gene 1 protein", "", "" ], [ "P43219-1", "Glucose-dependent insulinotropic polypeptide receptor", "", "" ], [ "Q9ESR9-1", "ATP-binding cassette transporter 2", "ATP-binding cassette 2", "" ], [ "Q60I18-1", "MHC class I-like located near the leukocyte receptor complex 1", "", "" ], [ "P37089-1", "Epithelial Na(+) channel subunit alpha", "Alpha-ENaC", "" ], [ "P37089-1", "Alpha-NaCH", "", "" ], [ "P37089-1", "SCNEA", "", "" ], [ "P37089-1", "Nonvoltage-gated sodium channel 1 subunit alpha", "", "" ], [ "Q00972-1", "Branched-chain alpha-ketoacid dehydrogenase kinase", "BCKD-kinase", "" ], [ "Q00972-1", "Branched-chain alpha-ketoacid dehydrogenase kinase", "BCKDHKIN", "" ], [ "Q9ESN0-1", "Protein Niban", "", "" ], [ "Q9ESN0-1", "Protein FAM129A", "", "" ], [ "Q5BK30-1", "Outer row dynein assembly protein 16 homolog", "", "" ], [ "Q5BK30-1", "WD repeat-containing protein 69", "", "" ], [ "Q5BK32-1", "UBX domain-containing protein 8", "", "" ], [ "P31016-1", "Synapse-associated protein 90", "SAP-90", "" ], [ "P31016-1", "Synapse-associated protein 90", "SAP90", "" ], [ "P31016-1", "Postsynaptic density protein 95", "PSD-95", "" ], [ "Q2ABP3-1", "FGF receptor-activating protein 1", "", "" ], [ "Q9R1E9-1", "Connective tissue growth-related protein", "", "" ], [ "Q9R1E9-1", "Cellular communication network factor 2", "", "" ], [ "Q9R1E9-1", "Connective tissue growth factor", "", "" ], [ "B1WBP0-1", "Fetal brain protein 239 homolog", "", "" ], [ "B1WBP0-1", "Metallophosphoesterase domain-containing protein 2", "", "" ], [ "B1WBP0-1", "239FB", "", "" ], [ "Q8VHU4-1", "IkappaB kinase complex-associated protein", "IKK complex-associated protein", "" ], [ "Q63285-1", "PAM COOH-terminal interactor protein 2", "P-CIP2", "" ], [ "Q63285-1", "U2AF homology motif kinase 1", "", "" ], [ "Q63285-1", "Kinase interacting with stathmin", "", "" ], [ "D3ZEJ0-1", "PR domain-containing protein 12", "", "" ], [ "D3ZEJ4-1", "S100 calcium-binding protein", "", "" ], [ "Q62739-1", "Rabin-3", "", "" ], [ "Q62739-1", "SSX2-interacting protein", "", "" ], [ "Q62737-1", "p22 phagocyte B-cytochrome", "", "" ], [ "Q62737-1", "p22-phox", "p22phox", "" ], [ "Q62737-1", "Cytochrome b558 subunit alpha", "", "" ], [ "Q62737-1", "Cytochrome b(558) alpha chain", "", "" ], [ "Q62737-1", "Neutrophil cytochrome b 22 kDa polypeptide", "", "" ], [ "Q62737-1", "Superoxide-generating NADPH oxidase light chain subunit", "", "" ], [ "Q62736-1", "L-caldesmon", "", "" ], [ "Q62735-1", "Retinoid X receptor-interacting protein 14", "RXR-interacting protein 14", "" ], [ "Q62735-1", "Farnesoid X-activated receptor", "", "" ], [ "Q62735-1", "Nuclear receptor subfamily 1 group H member 4", "", "" ], [ "Q62735-1", "Farnesol receptor HRR-1", "", "" ], [ "Q62733-1", "Thymopoietin isoform beta", "TP beta", "" ], [ "Q62730-1", "Testosterone 17-beta-dehydrogenase", "", "1.1.1.239" ] ] }, "readme": "Name\n - Rat Protein Alternative Name (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2019-09-06T14:06:38.991804\n\nModified on\n - 2022-09-26T09:04:47.887852\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for rat [taxid:10116] proteins. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_protein_altnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_altnames.csv\n Name: rat_protein_altnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_altnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"6646\"\n Name: \"alternative_name_full\"\n Description: \"Alternative full name of the protein in the UniProtKB database\"\n Unique Values: \"12672\"\n Name: \"alternative_name_short\"\n Description: \"Alternative short name of the protein in UniProtKB database\"\n Unique Values: \"3838\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"279\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/rat_protein_altnames.csv" }