{
    "bcoid": "GLY_000249",
    "title": "Rat Protein Function (NCBI RefSeq)",
    "description": "The Rat Protein Function (NCBI RefSeq) dataset contains biological function annotation of rat [taxid:10116] ...",
    "filename": "rat_protein_function_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Function"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P97682-1...",
                "NP_072126..."
            ],
            [
                "P97682-1...",
                "NP_072126..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "annotation"
                }
            ],
            [
                "P97682-1",
                "NP_072126",
                "protein_xref_refseq",
                "NP_072126",
                "Peripheral blood ESM-1 mRNA and ESM-1 protein expression in kidney grafts can reflect the severity of endothelial cell impairment"
            ],
            [
                "P97682-1",
                "NP_072126",
                "protein_xref_pubmed",
                "23850961",
                "Peripheral blood ESM-1 mRNA and ESM-1 protein expression in kidney grafts can reflect the severity of endothelial cell impairment"
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_refseq",
                "NP_072127",
                "We identified Hpse as a previously unexplored candidate, being up-regulated following injury. We confirmed these results and demonstrated inhibition of Hpse led to an acceleration of axonal degeneration, accompanied by an increase in b-catenin Publication Status: Online-Only"
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_pubmed",
                "29581478",
                "We identified Hpse as a previously unexplored candidate, being up-regulated following injury. We confirmed these results and demonstrated inhibition of Hpse led to an acceleration of axonal degeneration, accompanied by an increase in b-catenin Publication Status: Online-Only"
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_refseq",
                "NP_072127",
                "Heparanase plays an important role in mediating the neuroinflammatory response after subarachnoid hemorrhage. Publication Status: Online-Only"
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_pubmed",
                "28720149",
                "Heparanase plays an important role in mediating the neuroinflammatory response after subarachnoid hemorrhage. Publication Status: Online-Only"
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_refseq",
                "NP_072127",
                "Endothelial cell-to-cardiomyocyte transfer of heparanase to modulates the cardiomyocyte cell death signature. This mechanism was observed in the acutely diabetic heart, and its interruption following chronic diabetes may contribute towards the development of diabetic cardiomyopathy."
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_pubmed",
                "27979811",
                "Endothelial cell-to-cardiomyocyte transfer of heparanase to modulates the cardiomyocyte cell death signature. This mechanism was observed in the acutely diabetic heart, and its interruption following chronic diabetes may contribute towards the development of diabetic cardiomyopathy."
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_refseq",
                "NP_072127",
                "The expression of the gene for heparanase was increased in the right and left ventricles after treatment with monocrotaline"
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_pubmed",
                "26638897",
                "The expression of the gene for heparanase was increased in the right and left ventricles after treatment with monocrotaline"
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_refseq",
                "NP_072127",
                "Inhibiting heparanase function could offer a new strategy for managing cardiomyopathy observed after diabetes."
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_pubmed",
                "24608441",
                "Inhibiting heparanase function could offer a new strategy for managing cardiomyopathy observed after diabetes."
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_refseq",
                "NP_072127",
                "Characterization of rat heparanase activity in a parathyroid cell line"
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_pubmed",
                "12077130",
                "Characterization of rat heparanase activity in a parathyroid cell line"
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_refseq",
                "NP_072127",
                "Characterization of a novel intracellular heparanase that has a FERM domain."
            ],
            [
                "Q71RP1-1",
                "NP_072127",
                "protein_xref_pubmed",
                "11988100",
                "Characterization of a novel intracellular heparanase that has a FERM domain."
            ],
            [
                "Q6REY9-1",
                "NP_998794",
                "protein_xref_refseq",
                "NP_998794",
                "RARhoGAP expression was found in differentiating male germ cells and in the testis, suggesting that it may be involved in rearrangements of the cytoskeleton and cell signaling events that occur during spermatogenesis."
            ],
            [
                "Q6REY9-1",
                "NP_998794",
                "protein_xref_pubmed",
                "15234003",
                "RARhoGAP expression was found in differentiating male germ cells and in the testis, suggesting that it may be involved in rearrangements of the cytoskeleton and cell signaling events that occur during spermatogenesis."
            ],
            [
                "Q9QY10-1",
                "NP_072125",
                "protein_xref_refseq",
                "NP_072125",
                "FGF-BP is an early response gene after spinal cord injury and that its upregulation in regenerating spinal cord tissue may provide a molecular mechanism for enhancing the initial FGF2-mediated neurotrophic effects occurring after such tissue damage"
            ],
            [
                "Q9QY10-1",
                "NP_072125",
                "protein_xref_pubmed",
                "17553847",
                "FGF-BP is an early response gene after spinal cord injury and that its upregulation in regenerating spinal cord tissue may provide a molecular mechanism for enhancing the initial FGF2-mediated neurotrophic effects occurring after such tissue damage"
            ],
            [
                "Q6PCU8-1",
                "NP_072129",
                "protein_xref_refseq",
                "NP_072129",
                "We describe characterization of the complexes I purified from five rat tissues and from a rat hepatoma cell line. We identify a~50kDa isoform of subunit NDUFV3, for which the canonical isoform is only ~10kDa in size."
            ],
            [
                "Q6PCU8-1",
                "NP_072129",
                "protein_xref_pubmed",
                "27940020",
                "We describe characterization of the complexes I purified from five rat tissues and from a rat hepatoma cell line. We identify a~50kDa isoform of subunit NDUFV3, for which the canonical isoform is only ~10kDa in size."
            ],
            [
                "Q6PCU8-1",
                "NP_072129",
                "protein_xref_refseq",
                "NP_072129",
                "OBAP is mainly produced by mitochondria of parietal cells in the upper and lower parts of the gastric epithelium."
            ],
            [
                "Q6PCU8-1",
                "NP_072129",
                "protein_xref_pubmed",
                "26686297",
                "OBAP is mainly produced by mitochondria of parietal cells in the upper and lower parts of the gastric epithelium."
            ],
            [
                "P20646-1",
                "NP_001128373",
                "protein_xref_refseq",
                "NP_001128373",
                "PAP-immunoreactivity was present in type I and one of type III taste cells of taste buds. Thus, it is suggested that PAP might be a responsible ectoenzyme for metabolism of extracellular nucleotides, being involved in the regulation of taste signaling in taste buds. Publication Status: Online-Only"
            ],
            [
                "P20646-1",
                "NP_001128373",
                "protein_xref_pubmed",
                "27348306",
                "PAP-immunoreactivity was present in type I and one of type III taste cells of taste buds. Thus, it is suggested that PAP might be a responsible ectoenzyme for metabolism of extracellular nucleotides, being involved in the regulation of taste signaling in taste buds. Publication Status: Online-Only"
            ],
            [
                "P20646-1",
                "NP_001128373",
                "protein_xref_refseq",
                "NP_001128373",
                "Acpp plays an important role in growth and development of the penis of rats, and its expression is modulated at epigenomic levels via specific miRs"
            ],
            [
                "P20646-1",
                "NP_001128373",
                "protein_xref_pubmed",
                "25482440",
                "Acpp plays an important role in growth and development of the penis of rats, and its expression is modulated at epigenomic levels via specific miRs"
            ],
            [
                "P20646-1",
                "NP_001128373",
                "protein_xref_refseq",
                "NP_001128373",
                "Our findings suggest that the decrease of PAP in dorsal root ganglion neurons is involved in pathophysiological mechanisms of neuropathic pain Publication Status: Online-Only"
            ],
            [
                "P20646-1",
                "NP_001128373",
                "protein_xref_pubmed",
                "25674224",
                "Our findings suggest that the decrease of PAP in dorsal root ganglion neurons is involved in pathophysiological mechanisms of neuropathic pain Publication Status: Online-Only"
            ],
            [
                "Q76IC6-1",
                "NP_998792",
                "protein_xref_refseq",
                "NP_998792",
                "NIDD mRNA was predominantly expressed in nociceptive neurons and in neurons of the spinal dorsal horn and the number of NIDD-positive neurons in the corresponding dorsal root ganglia or spinal cord increased following induction of chronic hyperalgesia."
            ],
            [
                "Q76IC6-1",
                "NP_998792",
                "protein_xref_pubmed",
                "17899403",
                "NIDD mRNA was predominantly expressed in nociceptive neurons and in neurons of the spinal dorsal horn and the number of NIDD-positive neurons in the corresponding dorsal root ganglia or spinal cord increased following induction of chronic hyperalgesia."
            ],
            [
                "Q76IC6-1",
                "NP_998792",
                "protein_xref_refseq",
                "NP_998792",
                "NIDD gene expression may be involved in the different pathological conditions including nerve regeneration, neuron loss or survival, and even pain processes."
            ],
            [
                "Q76IC6-1",
                "NP_998792",
                "protein_xref_pubmed",
                "17873365",
                "NIDD gene expression may be involved in the different pathological conditions including nerve regeneration, neuron loss or survival, and even pain processes."
            ],
            [
                "Q76IC6-1",
                "NP_998792",
                "protein_xref_refseq",
                "NP_998792",
                "These results suggest that NIDD plays an important role in the regulation of the nitric oxide signaling pathway at postsynaptic sites through targeting of nueronal nitric oxide synthase to the postsynaptic membrane."
            ],
            [
                "Q76IC6-1",
                "NP_998792",
                "protein_xref_pubmed",
                "15105416",
                "These results suggest that NIDD plays an important role in the regulation of the nitric oxide signaling pathway at postsynaptic sites through targeting of nueronal nitric oxide synthase to the postsynaptic membrane."
            ],
            [
                "Q6ZXC8-1",
                "NP_998793",
                "protein_xref_refseq",
                "NP_998793",
                "Expression of St8sia5 increases over 15 fold at night in the rat pineal gland."
            ],
            [
                "Q6ZXC8-1",
                "NP_998793",
                "protein_xref_pubmed",
                "19103603",
                "Expression of St8sia5 increases over 15 fold at night in the rat pineal gland."
            ],
            [
                "P62634-1",
                "NP_072120",
                "protein_xref_refseq",
                "NP_072120",
                "Findings showed that ZNF9 is ubiquitously expressed in mammalian tissues, and that its signal is not substantially modified in myotonic dystrophy type 2 muscles"
            ],
            [
                "P62634-1",
                "NP_072120",
                "protein_xref_pubmed",
                "20102514",
                "Findings showed that ZNF9 is ubiquitously expressed in mammalian tissues, and that its signal is not substantially modified in myotonic dystrophy type 2 muscles"
            ],
            [
                "P62634-1",
                "NP_072120",
                "protein_xref_refseq",
                "NP_072120",
                "Znf9 haploinsufficiency contributes to the myotonic dystrophy phenotype in Znf9+/- mice."
            ],
            [
                "P62634-1",
                "NP_072120",
                "protein_xref_pubmed",
                "17335846",
                "Znf9 haploinsufficiency contributes to the myotonic dystrophy phenotype in Znf9+/- mice."
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_refseq",
                "NP_072124",
                "Our study suggests that up-regulation of Pim-3 successfully accelerated Chronic Obstructive Pulmonary Disease development, and aggravated lung damage"
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_pubmed",
                "28214201",
                "Our study suggests that up-regulation of Pim-3 successfully accelerated Chronic Obstructive Pulmonary Disease development, and aggravated lung damage"
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_refseq",
                "NP_072124",
                "Overexpression of pim-3 plays a protective role in LPS-stimulated hepatic stellate cells."
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_pubmed",
                "26269675",
                "Overexpression of pim-3 plays a protective role in LPS-stimulated hepatic stellate cells."
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_refseq",
                "NP_072124",
                "Ischemia-reperfusion injury up-regulated Pim-3 gene expression through oxidative stress signaling pathway in myocardial tissues."
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_pubmed",
                "21181358",
                "Ischemia-reperfusion injury up-regulated Pim-3 gene expression through oxidative stress signaling pathway in myocardial tissues."
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_refseq",
                "NP_072124",
                "Anoxic preconditioning could act to protect the heart from anoxia/reoxygenation injury with cooperation from the proto-oncogene Pim-3; in addition, it up-regulates Pim-3 expression through a p38 MAPK signaling pathway."
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_pubmed",
                "19505587",
                "Anoxic preconditioning could act to protect the heart from anoxia/reoxygenation injury with cooperation from the proto-oncogene Pim-3; in addition, it up-regulates Pim-3 expression through a p38 MAPK signaling pathway."
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_refseq",
                "NP_072124",
                "Pim-3 is expressed in endothelial cells and promotes vascular tube formation."
            ],
            [
                "O70444-1",
                "NP_072124",
                "protein_xref_pubmed",
                "19229879",
                "Pim-3 is expressed in endothelial cells and promotes vascular tube formation."
            ],
            [
                "Q6PNM1-1",
                "NP_998795",
                "protein_xref_refseq",
                "NP_998795",
                "Combined Immunotherapy With Belatacept and BTLA Overexpression Attenuates Acute Rejection Following Kidney Transplantation. Publication Status: Online-Only"
            ],
            [
                "Q6PNM1-1",
                "NP_998795",
                "protein_xref_pubmed",
                "33732243",
                "Combined Immunotherapy With Belatacept and BTLA Overexpression Attenuates Acute Rejection Following Kidney Transplantation. Publication Status: Online-Only"
            ],
            [
                "Q6ZM99-1",
                "NP_998897",
                "protein_xref_refseq",
                "NP_998897",
                "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]."
            ],
            [
                "Q6ZMA0-1",
                "NP_998896",
                "protein_xref_refseq",
                "NP_998896",
                "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_refseq",
                "NP_036708",
                "Role of glucocorticoid receptor (GR) in white adipose tissue beiging."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_pubmed",
                "37040814",
                "Role of glucocorticoid receptor (GR) in white adipose tissue beiging."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_refseq",
                "NP_036708",
                "Regulatory Effects of Maternal Immune Activation and Environmental Enrichment on Glucocorticoid Receptor and FKBP5 Expression in Stress-sensitive Regions of the Offspring Brain."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_pubmed",
                "36116554",
                "Regulatory Effects of Maternal Immune Activation and Environmental Enrichment on Glucocorticoid Receptor and FKBP5 Expression in Stress-sensitive Regions of the Offspring Brain."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_refseq",
                "NP_036708",
                "Glucocorticoid Receptor/HCN4 Channels Interaction in Spinal Dorsal Horn Participates in the Regulation of Neuropathic Pain after Peripheral Nerve Injury in Rats."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_pubmed",
                "36214984",
                "Glucocorticoid Receptor/HCN4 Channels Interaction in Spinal Dorsal Horn Participates in the Regulation of Neuropathic Pain after Peripheral Nerve Injury in Rats."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_refseq",
                "NP_036708",
                "Hypothalamic NR3C1 DNA methylation in rats exposed to prenatal stress."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_pubmed",
                "35661969",
                "Hypothalamic NR3C1 DNA methylation in rats exposed to prenatal stress."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_refseq",
                "NP_036708",
                "Norepinephrine and Glucocorticoids Modulate Chronic Unpredictable Stress-Induced Increase in the Type 2 CRF and Glucocorticoid Receptors in Brain Structures Related to the HPA Axis Activation."
            ],
            [
                "P06536-1",
                "NP_036708",
                "protein_xref_pubmed",
                "34213722",
                "Norepinephrine and Glucocorticoids Modulate Chronic Unpredictable Stress-Induced Increase in the Type 2 CRF and Glucocorticoid Receptors in Brain Structures Related to the HPA Axis Activation."
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_refseq",
                "NP_036706",
                "Activation of the N-methyl-D-aspartate receptor and calcium/calmodulin-dependent protein kinase IIalpha signal in the rostral anterior cingulate cortex is involved in pain-related aversion in rats with peripheral nerve injury."
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_pubmed",
                "37394125",
                "Activation of the N-methyl-D-aspartate receptor and calcium/calmodulin-dependent protein kinase IIalpha signal in the rostral anterior cingulate cortex is involved in pain-related aversion in rats with peripheral nerve injury."
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_refseq",
                "NP_036706",
                "Activation of CB1R alleviates central sensitization by regulating HCN2-pNR2B signaling in a chronic migraine rat model. Publication Status: Online-Only"
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_pubmed",
                "37085778",
                "Activation of CB1R alleviates central sensitization by regulating HCN2-pNR2B signaling in a chronic migraine rat model. Publication Status: Online-Only"
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_refseq",
                "NP_036706",
                "Hyperthyroidism leads learning and memory impairment possibly via GRIN2B expression alterations."
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_pubmed",
                "36563833",
                "Hyperthyroidism leads learning and memory impairment possibly via GRIN2B expression alterations."
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_refseq",
                "NP_036706",
                "The Weakened Interaction Between HECTD4 and GluN2B in Ischemic Stroke Promotes Calcium Overload and Brain Injury Through a Mechanism Involving the Decrease of GluN2B and MALT1 Ubiquitination."
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_pubmed",
                "36527595",
                "The Weakened Interaction Between HECTD4 and GluN2B in Ischemic Stroke Promotes Calcium Overload and Brain Injury Through a Mechanism Involving the Decrease of GluN2B and MALT1 Ubiquitination."
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_refseq",
                "NP_036706",
                "RAGE signaling pathway is involved in CUS-induced depression-like behaviors by regulating the expression of NR2A and NR2B in rat hippocampus DG."
            ],
            [
                "Q00960-1",
                "NP_036706",
                "protein_xref_pubmed",
                "36521778",
                "RAGE signaling pathway is involved in CUS-induced depression-like behaviors by regulating the expression of NR2A and NR2B in rat hippocampus DG."
            ],
            [
                "Q00961-1",
                "NP_036707",
                "protein_xref_refseq",
                "NP_036707",
                "UBP791 ((2S*, 3R*)-1-(7-(2-carboxyethyl)phenanthrene-2-carbonyl)piperazine-2, 3-dicarboxylic acid) inhibits GluN2C/2D with 40-fold selectivity over GluN2A-containing receptors, and that a methionine and a lysine residue in the ligand binding pocket are the critical molecular elements for the subtype-specific binding. Publication Status: Online-Only"
            ],
            [
                "Q00961-1",
                "NP_036707",
                "protein_xref_pubmed",
                "31969570",
                "UBP791 ((2S*, 3R*)-1-(7-(2-carboxyethyl)phenanthrene-2-carbonyl)piperazine-2, 3-dicarboxylic acid) inhibits GluN2C/2D with 40-fold selectivity over GluN2A-containing receptors, and that a methionine and a lysine residue in the ligand binding pocket are the critical molecular elements for the subtype-specific binding. Publication Status: Online-Only"
            ],
            [
                "Q00961-1",
                "NP_036707",
                "protein_xref_refseq",
                "NP_036707",
                "A neuroprotective role of GluN2C, suggesting a mechanism by which GluN2C is upregulated to promote neuronal survival following ischemia. Publication Status: Online-Only"
            ],
            [
                "Q00961-1",
                "NP_036707",
                "protein_xref_pubmed",
                "27845401",
                "A neuroprotective role of GluN2C, suggesting a mechanism by which GluN2C is upregulated to promote neuronal survival following ischemia. Publication Status: Online-Only"
            ],
            [
                "Q00961-1",
                "NP_036707",
                "protein_xref_refseq",
                "NP_036707",
                "These findings highlight the isoform-specific structural and functional differences within the 14-3-3 family of proteins, which determine GluN2C binding and its essential role in targeting the receptor to the cell surface"
            ],
            [
                "Q00961-1",
                "NP_036707",
                "protein_xref_pubmed",
                "26229101",
                "These findings highlight the isoform-specific structural and functional differences within the 14-3-3 family of proteins, which determine GluN2C binding and its essential role in targeting the receptor to the cell surface"
            ],
            [
                "Q01812-1",
                "NP_036704",
                "protein_xref_refseq",
                "NP_036704",
                "The structure of a high-affinity kainate receptor gluk4 ligand-binding domain crystallized with kainite has been presented."
            ],
            [
                "Q01812-1",
                "NP_036704",
                "protein_xref_pubmed",
                "27524200",
                "The structure of a high-affinity kainate receptor gluk4 ligand-binding domain crystallized with kainite has been presented."
            ]
        ]
    },
    "readme": "Name\n   - Rat Protein Function (NCBI RefSeq)\n\nVersion\n   - v-2.3.1\n\nCreated on\n  - 2019-09-06T14:06:38.975527\n\nModified on\n   - 2022-09-26T09:04:47.890686\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Protein Function (NCBI RefSeq) dataset contains biological function annotation of rat [taxid:10116] genes from GeneRIF section in the NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen. \n\nDescription Domain\n   Keywords\n   - protein function\n   - NCBI RefSeq\n   - geneRIF\n   - PMID\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the geneRIFs that contain protein function. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_xref_refseq.csv\n      Name: refseq_protein_all_10116.gpff\n      URI: https:/data.glygen.org/ln2downloads/ncbi/refseq/2023_10_12/refseq_protein_all_10116.gpff\n   Output Subdomain\n      Name: rat_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_function_refseq.csv\n      Name: rat_protein_function_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_protein_function_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"6310\"\n      Name: \"refseq_ac\"\n     Description: \"Accession in the NCBI RefSeq database\"\n      Unique Values: \"6491\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"2\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"19695\"\n      Name: \"annotation\"\n     Description: \"Function annotation from UniProtKB|RefSeq database\"\n      Unique Values: \"13569\"",
    "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/rat_protein_function_refseq.csv"
}
