{ "bcoid": "GLY_000235", "title": "Mouse Protein Citations (RefSeq)", "description": "The Mouse Protein Citations (RefSeq) datasets contains mouse [taxid:10090] UniProtKB accessions mapped ...", "filename": "mouse_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": [ "Mus musculus" ], "molecule": [ "Protein" ], "tag": [ "Protein Citations" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q9CQN6-1...", "Discovery of..." ], [ "Q9WV08-1...", "Elabela-APJ ..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q9CQN6-1", "Discovery of genes essential for heme biosynthesis through large-scale gene expression analysis.", "Cell metabolism", "2009 Aug", "Nilsson R, Schultz IJ, Pierce EL, Soltis KA, Naranuntarat A, Ward DM, Baughman JM, Paradkar PN, Kingsley PD, Culotta VC, Kaplan J, Palis J, Paw BH, Mootha VK", "protein_xref_pubmed", "19656490", "protein_xref_refseq", "NP_079663" ], [ "Q9WV08-1", "Elabela-APJ axis mediates angiogenesis via YAP/TAZ pathway in cerebral ischemia/reperfusion injury.", "Translational research : the journal of laboratory and clinical medicine", "2023-02-21", "Li Wenyu, Xu Pengfei, Kong Lingqi, Feng Shuo, Shen Nan, Huang Hongmei, Wang Wuxuan, Xu Xiang, Wang Xinyue, Wang Guoping, Zhang Yan, Sun Wen, Hu Wei, Liu Xinfeng", "protein_xref_pubmed", "36813109", "protein_xref_refseq", "NP_035914" ], [ "P06802-1", "HER2\u039416 Engages ENPP1 to Promote an Immune-Cold Microenvironment in Breast Cancer.", "Cancer immunology research", "2023-09-01", "Attalla Sherif Samer, Boucher Jonathan, Proud Hailey, Taifour Tarek, Zuo Dongmei, Sanguin-Gendreau Virginie, Ling Chen, Johnson Gabriella, Li Vincent, Luo Robin B, Kuasne Hellen, Papavasiliou Vasilios, Walsh Logan A, Barok Mark, Joensuu Heikki, Park Morag, Roux Philippe P, Muller William J", "protein_xref_pubmed", "37311021", "protein_xref_refseq", "NP_032839" ], [ "Q9JIF0-1", "PRMT1 mediated methylation of cGAS suppresses anti-tumor immunity.", "Nature communications", "2023-05-17", "Liu Jing, Bu Xia, Chu Chen, Dai Xiaoming, Asara John M, Sicinski Piotr, Freeman Gordon J, Wei Wenyi", "protein_xref_pubmed", "37193698", "protein_xref_refseq", "NP_001239405" ], [ "Q9CX47-1", "XRCC2 mutation causes meiotic arrest, azoospermia and infertility.", "Journal of medical genetics", "2018 Sep", "Yang Y, Guo J, Dai L, Zhu Y, Hu H, Tan L, Chen W, Liang D, He J, Tu M, Wang K, Wu L", "protein_xref_pubmed", "30042186", "protein_xref_refseq", "NP_065595" ], [ "Q921U8-1", "Smoothelin-B deficiency results in reduced arterial contractility, hypertension, and cardiac hypertrophy in mice.", "Circulation", "2008 Aug 19", "Rensen SS, Niessen PM, van Deursen JM, Janssen BJ, Heijman E, Hermeling E, Meens M, Lie N, Gijbels MJ, Strijkers GJ, Doevendans PA, Hofker MH, De Mey JG, van Eys GJ", "protein_xref_pubmed", "18678771", "protein_xref_refseq", "NP_001152756" ], [ "Q6P542-1", "The role of the innate immune response regulatory gene ABCF1 in mammalian embryogenesis and development.", "PloS one", "2017", "Wilcox SM, Arora H, Munro L, Xin J, Fenninger F, Johnson LA, Pfeifer CG, Choi KB, Hou J, Hoodless PA, Jefferies WA", "protein_xref_pubmed", "28542262", "protein_xref_refseq", "NP_038882" ], [ "Q6NZM9-1", "WTAP-Mediated m6A RNA Methylation Regulates the Differentiation of Bone Marrow Mesenchymal Stem Cells via the miR-29b-3p/HDAC4 Axis.", "Stem cells translational medicine", "2023-04-03", "Liu Jincheng, You Yunhao, Sun Zhenqian, Zhang Lu, Li Xiang, Dai Zihan, Ma Jinlong, Chen Yunzhen, Jiao Guangjun", "protein_xref_pubmed", "37010483", "protein_xref_refseq", "NP_997108" ], [ "Q8CDG5-1", "Loss of CREBRF Reduces Anxiety-like Behaviors and Circulating Glucocorticoids in Male and Female Mice.", "Endocrinology", "2020 Nov 1", "Frahm KA, Williams AA, Wood AN, Ewing MC, Mattila PE, Chuan BW, Guo L, Shah FA, O'Donnell CP, Lu R, DeFranco DB", "protein_xref_pubmed", "32901804", "protein_xref_refseq", "NP_084146" ], [ "E9Q5I3-1", "The mouse Muc5b mucin gene: cDNA and genomic structures, chromosomal localization and expression.", "The Biochemical journal", "2002 May 1", "Escande F, Porchet N, Aubert JP, Buisine MP", "protein_xref_pubmed", "11964160", "protein_xref_refseq", "NP_083077" ], [ "Q99N32-1", "BetaKlotho is required for metabolic activity of fibroblast growth factor 21.", "Proceedings of the National Academy of Sciences of the United States of America", "2007 May 1", "Ogawa Y, Kurosu H, Yamamoto M, Nandi A, Rosenblatt KP, Goetz R, Eliseenkova AV, Mohammadi M, Kuro-o M", "protein_xref_pubmed", "17452648", "protein_xref_refseq", "NP_112457" ], [ "Q9EPK5-1", "TAZ interacts with TTF-1 and regulates expression of surfactant protein-C.", "The Journal of biological chemistry", "2004 Apr 23", "Park KS, Whitsett JA, Di Palma T, Hong JH, Yaffe MB, Zannini M", "protein_xref_pubmed", "14970209", "protein_xref_refseq", "NP_001161753" ], [ "Q9CWS0-1", "Mechanical force promotes dimethylarginine dimethylaminohydrolase 1-mediated hydrolysis of the metabolite asymmetric dimethylarginine to enhance bone formation.", "Nature communications", "2022 Jan 10", "Xie Z, Hou L, Shen S, Wu Y, Wang J, Jie Z, Zhao X, Li X, Zhang X, Chen J, Xu W, Ning L, Ma Q, Wang S, Wang H, Yuan P, Fang X, Qin A, Fan S", "protein_xref_pubmed", "35013196", "protein_xref_refseq", "NP_081269" ], [ "Q8C3P7-1", "METTL3-mediated m6 A modification of circPRKAR1B promotes Crohn's colitis by inducing pyroptosis via autophagy inhibition.", "Clinical and translational medicine", "2023-09", "Zhao Jie, Zhao Zhibin, Ying Pu, Zhou Yan, Xu Ziwei, Wang Honggang, Tang Liming", "protein_xref_pubmed", "37679886", "protein_xref_refseq", "NP_062695" ], [ "D3YYM4-1", "Identification of the C-terminal region in Amelogenesis Imperfecta causative protein WDR72 required for Golgi localization.", "Scientific reports", "2022 Mar 17", "Husein D, Alamoudi A, Ohyama Y, Mochida H, Ritter B, Mochida Y", "protein_xref_pubmed", "35301423", "protein_xref_refseq", "NP_001028672" ], [ "Q9ERD8-1", "gamma-Parvin is dispensable for hematopoiesis, leukocyte trafficking, and T-cell-dependent antibody response.", "Molecular and cellular biology", "2006 Mar", "Chu H, Thievessen I, Sixt M, Lammermann T, Waisman A, Braun A, Noegel AA, Fassler R", "protein_xref_pubmed", "16479001", "protein_xref_refseq", "NP_001155972" ], [ "Q8VCC8-1", "cAMP-EPAC-PKC\u03b5-RIM1\u03b1 signaling regulates presynaptic long-term potentiation and motor learning.", "eLife", "2023-04-26", "Wang Xin-Tai, Zhou Lin, Dong Bin-Bin, Xu Fang-Xiao, Wang De-Juan, Shen En-Wei, Cai Xin-Yu, Wang Yin, Wang Na, Ji Sheng-Jian, Chen Wei, Schonewille Martijn, Zhu J Julius, De Zeeuw Chris I, Shen Ying", "protein_xref_pubmed", "37159499", "protein_xref_refseq", "NP_001171282" ], [ "P30204-1", "Role of macrophage scavenger receptor MSR1 in the progression of non-alcoholic steatohepatitis.", "Frontiers in immunology", "2022", "Sheng Wei, Ji Guang, Zhang Li", "protein_xref_pubmed", "36591228", "protein_xref_refseq", "NP_001106797" ], [ "Q9DAP7-1", "Loss of the histone chaperone ASF1B reduces female reproductive capacity in mice.", "Reproduction (Cambridge, England)", "2016 May", "Messiaen S, Guiard J, Aigueperse C, Fliniaux I, Tourpin S, Barroca V, Allemand I, Fouchet P, Livera G, Vernet M", "protein_xref_pubmed", "26850882", "protein_xref_refseq", "NP_077146" ], [ "Q8VEL2-1", "Muscle-specific inositide phosphatase (MIP/MTMR14) is reduced with age and its loss accelerates skeletal muscle aging process by altering calcium homeostasis.", "Aging", "2010 Aug", "Romero-Suarez S, Shen J, Brotto L, Hall T, Mo C, Valdivia HH, Andresen J, Wacker M, Nosek TM, Qu CK, Brotto M", "protein_xref_pubmed", "20817957", "protein_xref_refseq", "NP_081125" ], [ "Q9CQR4-1", "Interacting proteins dictate function of the minimal START domain phosphatidylcholine transfer protein/StarD2.", "The Journal of biological chemistry", "2007 Oct 19", "Kanno K, Wu MK, Agate DS, Fanelli BJ, Wagle N, Scapa EF, Ukomadu C, Cohen DE", "protein_xref_pubmed", "17704541", "protein_xref_refseq", "NP_080066" ], [ "P24638-1", "Mutation in the gene encoding lysosomal acid phosphatase (Acp2) causes cerebellum and skin malformation in mouse.", "Neurogenetics", "2004 Dec", "Mannan AU, Roussa E, Kraus C, Rickmann M, Maenner J, Nayernia K, Krieglstein K, Reis A, Engel W", "protein_xref_pubmed", "15503243", "protein_xref_refseq", "NP_031413" ], [ "P56481-1", "Intestinal Gastrin/CCKBR (Cholecystokinin B Receptor) Ameliorates Salt-Sensitive Hypertension by Inhibiting Intestinal Na(+)/H(+) Exchanger 3 Activity Through a PKC (Protein Kinase C)-Mediated NHERF1 and NHERF2 Pathway.", "Hypertension (Dallas, Tex. : 1979)", "2022 Aug", "Jiang X, Liu Y, Zhang XY, Liu X, Liu X, Wu X, Jose PA, Duan S, Xu FJ, Yang Z", "protein_xref_pubmed", "35674015", "protein_xref_refseq", "NP_031653" ], [ "Q99JW4-1", "PINCH-1 promotes Delta(1)-pyrroline-5-carboxylate synthase expression and contributes to proline metabolic reprogramming in lung adenocarcinoma.", "Amino acids", "2021 Dec", "Cui C, Wang J, Guo L, Wu C", "protein_xref_pubmed", "34283311", "protein_xref_refseq", "NP_957694" ], [ "Q3UPW2-1", "Epithelial tumor suppressor ELF3 is a lineage-specific amplified oncogene in lung adenocarcinoma.", "Nature communications", "2019 Nov 28", "Enfield KSS, Marshall EA, Anderson C, Ng KW, Rahmati S, Xu Z, Fuller M, Milne K, Lu D, Shi R, Rowbotham DA, Becker-Santos DD, Johnson FD, English JC, MacAulay CE, Lam S, Lockwood WW, Chari R, Karsan A, Jurisica I, Lam WL", "protein_xref_pubmed", "31780666", "protein_xref_refseq", "NP_001156603" ], [ "Q80VH0-1", "ZFP521 contributes to pre-B-cell lymphomagenesis through modulation of the pre-B-cell receptor signaling pathway.", "Oncogene", "2016 Jun 23", "Hiratsuka T, Takei Y, Ohmori R, Imai Y, Ozeki M, Tamaki K, Haga H, Nakamura T, Tsuruyama T", "protein_xref_pubmed", "26522721", "protein_xref_refseq", "NP_001297678" ], [ "Q9JL10-1", "Sei-1 promotes double minute chromosomes formation through activation of the PI3K/Akt/BRCA1-Abraxas pathway and induces double-strand breaks in NIH-3T3 fibroblasts.", "Cell death & disease", "2018 Mar 1", "Tian X, Liu C, Wang X, Wang F, Wang L, Xu L, Ma J, Gao Y, Bao Y, Wang F, Sun L, Wei J, Lin C, Zhang H, Zhu G, Guan X, Fu S, Zhang C", "protein_xref_pubmed", "29497033", "protein_xref_refseq", "NP_061290" ], [ "E9Q842-1", "Nav2 is necessary for cranial nerve development and blood pressure regulation.", "Neural development", "2010 Feb 25", "McNeill EM, Roos KP, Moechars D, Clagett-Dame M", "protein_xref_pubmed", "20184720", "protein_xref_refseq", "NP_780481" ], [ "Q8K0G8-1", "TGF-beta drives epithelial-mesenchymal transition through deltaEF1-mediated downregulation of ESRP.", "Oncogene", "2012 Jun 28", "Horiguchi K, Sakamoto K, Koinuma D, Semba K, Inoue A, Inoue S, Fujii H, Yamaguchi A, Miyazawa K, Miyazono K, Saitoh M", "protein_xref_pubmed", "22037216", "protein_xref_refseq", "NP_789808" ], [ "Q9D198-1", "Disruption of murine mp29/Syf2/Ntc31 gene results in embryonic lethality with aberrant checkpoint response.", "PloS one", "2012", "Chen CH, Chu PC, Lee L, Lien HW, Lin TL, Fan CC, Chi P, Huang CJ, Chang MS", "protein_xref_pubmed", "22448250", "protein_xref_refseq", "NP_081056" ], [ "P70236-1", "MicroRNA-370 carried by M2 macrophage-derived exosomes alleviates asthma progression through inhibiting the FGF1/MAPK/STAT1 axis.", "International journal of biological sciences", "2021", "Li C, Deng C, Zhou T, Hu J, Dai B, Yi F, Tian N, Jiang L, Dong X, Zhu Q, Zhang S, Cui H, Cao L, Shang Y", "protein_xref_pubmed", "33994863", "protein_xref_refseq", "NP_036073" ], [ "Q9JKK0-1", "Differential expression of members of the RCAN family of calcineurin regulators suggests selective functions for these proteins in the brain.", "The European journal of neuroscience", "2007 Sep", "Porta S, Marti E, de la Luna S, Arbones ML", "protein_xref_pubmed", "17767500", "protein_xref_refseq", "NP_075356" ], [ "Q64010-1", "A novel viral oncogene with structural similarity to phospholipase C.", "Nature", "1988 Mar 17", "Mayer BJ, Hamaguchi M, Hanafusa H", "protein_xref_pubmed", "2450282", "protein_xref_refseq", "NP_598417" ], [ "Q9D0S4-1", "Neur1 and Neur2 are required for hippocampus-dependent spatial memory and synaptic plasticity.", "Hippocampus", "2020 Nov", "Lee J, Yoon KJ, Park P, Lee C, Kim MJ, Han DH, Kim JI, Kim S, Lee HR, Lee Y, Jang EH, Ko HG, Kong YY, Kaang BK", "protein_xref_pubmed", "32644222", "protein_xref_refseq", "NP_001076443" ], [ "Q99LJ8-1", "Identification of a receptor necessary for Nogo-B stimulated chemotaxis and morphogenesis of endothelial cells.", "Proceedings of the National Academy of Sciences of the United States of America", "2006 Jul 18", "Miao RQ, Gao Y, Harrison KD, Prendergast J, Acevedo LM, Yu J, Hu F, Strittmatter SM, Sessa WC", "protein_xref_pubmed", "16835300", "protein_xref_refseq", "NP_084526" ], [ "Q9CQ70-1", "Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells.", "Molecular cell", "2017 Apr 6", "Barral S, Morozumi Y, Tanaka H, Montellier E, Govin J, de Dieuleveult M, Charbonnier G, Coute Y, Puthier D, Buchou T, Boussouar F, Urahama T, Fenaille F, Curtet S, Hery P, Fernandez-Nunez N, Shiota H, Gerard M, Rousseaux S, Kurumizaka H, Khochbin S", "protein_xref_pubmed", "28366643", "protein_xref_refseq", "NP_080903" ], [ "Q9Z222-1", "N-linked polylactosamine glycan synthesis is regulated by co-expression of beta3GnT2 and GCNT2.", "Journal of cellular physiology", "2014 Apr", "Henion TR, Schwarting GA", "protein_xref_pubmed", "24105809", "protein_xref_refseq", "NP_001162585" ], [ "Q8BMS2-1", "The extracellular matrix protein mindin is a pattern-recognition molecule for microbial pathogens.", "Nature immunology", "2004 Jan", "He YW, Li H, Zhang J, Hsu CL, Lin E, Zhang N, Guo J, Forbush KA, Bevan MJ", "protein_xref_pubmed", "14691481", "protein_xref_refseq", "NP_598664" ], [ "P17809-1", "Quantitative determination of SLC2A1 variant functional effects in GLUT1 deficiency syndrome.", "Annals of clinical and translational neurology", "2023-03-31", "Tayebi Naeimeh, Leon-Ricardo Brian, McCall Kevin, Mehinovic Elvisa, Engelstad Kristin, Huynh Vincent, Turner Tychele N, Weisenberg Judy, Thio Liu L, Hruz Paul, Williams Robin S B, De Vivo Darryl C, Petit Vincent, Haller Gabe, Gurnett Christina A", "protein_xref_pubmed", "37000947", "protein_xref_refseq", "NP_035530" ], [ "Q8BWY3-1", "Reverse transcriptase of Moloney murine leukemia virus binds to eukaryotic release factor 1 to modulate suppression of translational termination.", "Cell", "2003 Oct 31", "Orlova M, Yueh A, Leung J, Goff SP", "protein_xref_pubmed", "14636559", "protein_xref_refseq", "NP_659115" ], [ "O35182-1", "Inhibitory SMAD6 interferes with BMP-dependent generation of muscle progenitor cells and perturbs proximodistal pattern of murine limb muscles.", "Development (Cambridge, England)", "2023-06-01", "Asfour Hasan, Hirsinger Estelle, Rouco Raquel, Zarrouki Faouzi, Hayashi Shinichiro, Swist Sandra, Braun Thomas, Patel Ketan, Relaix Fr\u00e9d\u00e9ric, Andrey Guillaume, Stricker Sigmar, Duprez Delphine, Stantzou Amalia, Amthor Helge", "protein_xref_pubmed", "37272529", "protein_xref_refseq", "NP_032568" ], [ "Q60837-1", "IL12Rbeta1DeltaTM is a secreted product of il12rb1 that promotes control of extrapulmonary tuberculosis.", "Infection and immunity", "2015 Feb", "Ray AA, Fountain JJ, Miller HE, Cooper AM, Robinson RT", "protein_xref_pubmed", "25404030", "protein_xref_refseq", "NP_032379" ], [ "Q9JIP4-1", "Expression of neural connexins and pannexin1 in the hippocampus and inferior olive: a quantitative approach.", "Brain research. Molecular brain research", "2005 Jan 5", "Weickert S, Ray A, Zoidl G, Dermietzel R", "protein_xref_pubmed", "15661370", "protein_xref_refseq", "NP_062355" ], [ "O08609-1", "The glucose-sensing transcription factor MLX promotes myogenesis via myokine signaling.", "Genes & development", "2015 Dec 1", "Hunt LC, Xu B, Finkelstein D, Fan Y, Carroll PA, Cheng PF, Eisenman RN, Demontis F", "protein_xref_pubmed", "26584623", "protein_xref_refseq", "NP_035680" ], [ "Q8K1S4-1", "GPC3-Unc5 receptor complex structure and role in cell migration.", "Cell", "2022-10-13", "Akkermans Onno, Delloye-Bourgeois C\u00e9line, Peregrina Claudia, Carrasquero-Ordaz Maria, Kokolaki Maria, Berbeira-Santana Miguel, Chavent Matthieu, Reynaud Florie, Raj Ritu, Agirre Jon, Aksu Metin, White Eleanor S, Lowe Edward, Ben Amar Dounia, Zaballa Sofia, Huo Jiandong, Pakos Irene, McCubbin Patrick T N, Comoletti Davide, Owens Raymond J, Robinson Carol V, Castellani Val\u00e9rie, Del Toro Daniel, Seiradake Elena", 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reproduction", "2002 Feb", "Nadano D, Sugihara K, Paria BC, Saburi S, Copeland NG, Gilbert DJ, Jenkins NA, Nakayama J, Fukuda MN", "protein_xref_pubmed", "11804944", "protein_xref_refseq", "NP_062421" ], [ "P07758-1", "Placental HTRA1 cleaves alpha1-antitrypsin to generate a NET-inhibitory peptide.", "Blood", "2021 Sep 16", "Campbell RA, Campbell HD, Bircher JS, de Araujo CV, Denorme F, Crandell JL, Rustad JL, Monts J, Cody MJ, Kosaka Y, Yost CC", "protein_xref_pubmed", "34192300", "protein_xref_refseq", "NP_033269" ], [ "G5E870-1", "Mild iron overload induces TRIP12-mediated degradation of YY1 to trigger hepatic inflammation.", "Free radical biology & medicine", "2020 Dec", "Tang Y, Wang D, Niu X, Wu H, Yang J, Zhang Y, Song S, Lv D, Chai Y, Lu H, Shen H, Ling C, Li M", "protein_xref_pubmed", "33080340", "protein_xref_refseq", "NP_598736" ], [ "Q64GA5-1", "Induction of group IVC phospholipase A2 in allergic asthma: transcriptional regulation by TNFalpha in bronchoepithelial cells.", "The Biochemical journal", "2012 Feb 15", "Bickford JS, Newsom KJ, Herlihy JD, Mueller C, Keeler B, Qiu X, Walters JN, Su N, Wallet SM, Flotte TR, Nick HS", "protein_xref_pubmed", "22082005", "protein_xref_refseq", "NP_001004762" ], [ "Q3UIK4-1", "Mettl14 sustains FOXP3 expression to promote the differentiation and functions of induced-regulatory T cells via the mTOR signaling pathway.", "Immunology letters", "2023-04-28", "Liu Yanzhuo, Yuan Yinglin, Zhou Zili, Jiang Xiaomei, He Shu, Wei Fan, Cui Yuanyuan, Yang Lu, Zhao Gaoping", "protein_xref_pubmed", "37121553", "protein_xref_refseq", "NP_964000" ], [ "Q924A0-1", "TCF7L2 acts as a molecular switch in midbrain to control mammal vocalization through its DNA binding domain but not transcription activation domain.", "Molecular psychiatry", "2023-02-13", "Qi Huihui, Luo Li, Lu Caijing, Chen Runze, Zhou Xianyao, Zhang Xiaohui, Jia Yichang", "protein_xref_pubmed", "36782064", "protein_xref_refseq", "NP_001136392" ], [ "P33173-1", "GSK3beta 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Susuki K, Rasband MN, Peles E", "protein_xref_pubmed", "32209430", "protein_xref_refseq", "NP_796324" ] ] }, "readme": "Name\n - Mouse Protein Citations (RefSeq)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2019-09-06T14:06:38.962804\n\nModified on\n - 2022-09-26T09:04:47.954130\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Citations (RefSeq) datasets contains mouse [taxid:10090] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen. \n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/compiled/mouse_protein_blacklisted_pmids_uniprotkb.csv\n Name: mouse_protein_function_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_function_refseq.csv\n Output Subdomain\n Name: mouse_protein_citations_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_citations_refseq.csv\n Name: mouse_protein_citations_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/mouse_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"12139\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"31350\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1455\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"5236\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"31269\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"31351\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"14074\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/mouse_protein_citations_refseq.csv" }