{ "bcoid": "GLY_000231", "title": "Rat Phosphorylation Sites (UniProtKB)", "description": "The Rat Phosphorylation Sites (UniProtKB) dataset contains rat [taxid:10116] UniProtKB canonical accessions ...", "filename": "rat_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": [ "Rattus norvegicus" ], "molecule": [ "Proteoform" ], "tag": [ "Phosphorylation Sites" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "Q63604-1...", "705..." ], [ "Q04589-1...", "766..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "Q63604-1", "705", "Tyr", "", "", "protein_xref_uniprotkb", "Q63604", "protein_xref_uniprotkb", "Q63604", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q04589-1", "766", "Tyr", "", "", "protein_xref_uniprotkb", "Q04589", "protein_xref_uniprotkb", "Q04589", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "O08775-1", "1171", "Tyr", "", "", "protein_xref_uniprotkb", "O08775", "protein_xref_uniprotkb", "O08775", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P35739-1", "499", "Tyr", "", "", "protein_xref_uniprotkb", "P35739", "protein_xref_uniprotkb", "P35739", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q07303-1", "367", "Tyr", "", "", "protein_xref_uniprotkb", "Q07303", "protein_xref_uniprotkb", "Q07303", "Phosphotyrosine", "Phosphotyrosine; by JAK2", "" ], [ "Q07303-1", "425", "Tyr", "", "", "protein_xref_uniprotkb", "Q07303", "protein_xref_uniprotkb", "Q07303", "Phosphotyrosine", "Phosphotyrosine; by JAK2", "" ], [ "Q9Z330-1", "515", "Ser", "", "", "protein_xref_uniprotkb", "Q9Z330", "protein_xref_uniprotkb", "Q9Z330", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P84245-1", "32", "Ser", "", "", "protein_xref_uniprotkb", "P84245", "protein_xref_uniprotkb", "P84245", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q03351-1", "859", "Tyr", "", "", "protein_xref_uniprotkb", "Q03351", "protein_xref_uniprotkb", "Q03351", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "P35739-1", "794", "Tyr", "", "", "protein_xref_uniprotkb", "P35739", "protein_xref_uniprotkb", "P35739", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q03351-1", "516", "Tyr", "", "", "protein_xref_uniprotkb", "Q03351", "protein_xref_uniprotkb", "Q03351", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q07303-1", "453", "Tyr", "", "", "protein_xref_uniprotkb", "Q07303", "protein_xref_uniprotkb", "Q07303", "Phosphotyrosine", "Phosphotyrosine; by JAK2", "" ], [ "Q63604-1", "816", "Tyr", "", "", "protein_xref_uniprotkb", "Q63604", "protein_xref_uniprotkb", "Q63604", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q63604-1", "515", "Tyr", "", "", "protein_xref_uniprotkb", "Q63604", "protein_xref_uniprotkb", "Q63604", "Phosphotyrosine", "Phosphotyrosine; by autocatalysis", "" ], [ "Q7TSU1-1", "1521", "Ser", "", "", "protein_xref_uniprotkb", "Q7TSU1", "protein_xref_uniprotkb", "Q7TSU1", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q7TSU1-1", "1521", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q7TSU1", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P70478-1", "2270", "Ser", "", "", "protein_xref_uniprotkb", "P70478", "protein_xref_uniprotkb", "P70478", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P16086-1", "1323", "Ser", "", "", "protein_xref_uniprotkb", "P16086", "protein_xref_uniprotkb", "P16086", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q1JU68-1", "1310", "Ser", "", "", "protein_xref_uniprotkb", "Q1JU68", "protein_xref_uniprotkb", "Q1JU68", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q1JU68-1", "1310", "Ser", "", "", "protein_xref_uniprotkb", "Q1JU68", "protein_xref_uniprotkb", "Q1JU68", "Phosphoserine", "Phosphoserine", "ECO_0000255" ], [ "P30427-1", "4399", "Ser", "", "", "protein_xref_uniprotkb", "P30427", "protein_xref_uniprotkb", "P30427", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q63638-1", "2774", "Ser", "", "", "protein_xref_uniprotkb", "Q63638", "protein_xref_uniprotkb", "Q63638", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q63638-1", "2774", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q63638", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P30427-1", "3583", "Ser", "", "", "protein_xref_uniprotkb", "P30427", "protein_xref_uniprotkb", "P30427", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P30427-1", "3583", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P30427", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q8K1P7-1", "1390", "Thr", "", "", "protein_xref_uniprotkb", "Q8K1P7", "protein_xref_uniprotkb", "Q8K1P7", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q8K1P7-1", "1536", "Ser", "", "", "protein_xref_uniprotkb", "Q8K1P7", "protein_xref_uniprotkb", "Q8K1P7", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q8K1P7-1", "1536", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q8K1P7", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P0C6C0-1", "1101", "Ser", "", "", "protein_xref_uniprotkb", "P0C6C0", "protein_xref_uniprotkb", "P0C6C0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P70705-1", "1452", "Ser", "", "", "protein_xref_uniprotkb", "P70705", "protein_xref_uniprotkb", "P70705", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P70478-1", "2535", "Ser", "", "", "protein_xref_uniprotkb", "P70478", "protein_xref_uniprotkb", "P70478", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P15304-1", "906", "Ser", "", "", "protein_xref_uniprotkb", "P15304", "protein_xref_uniprotkb", "P15304", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P15304-1", "906", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P15304", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q5RKH1-1", "852", "Ser", "", "", "protein_xref_uniprotkb", "Q5RKH1", "protein_xref_uniprotkb", "Q5RKH1", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q5RKH1-1", "852", "Ser", "", "", "protein_xref_pubmed", "16641100", "protein_xref_uniprotkb", "Q5RKH1", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P07323-1", "26", "Thr", "", "", "protein_xref_uniprotkb", "P07323", "protein_xref_uniprotkb", "P07323", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P12928-1", "26", "Ser", "", "", "protein_xref_uniprotkb", "P12928", "protein_xref_uniprotkb", "P12928", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JK41-1", "111", "Thr", "", "", "protein_xref_uniprotkb", "Q9JK41", "protein_xref_uniprotkb", "Q9JK41", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P0DP31-1", "111", "Thr", "", "", "protein_xref_uniprotkb", "P0DP31", "protein_xref_uniprotkb", "P0DP31", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q5XIH0-1", "70", "Ser", "", "", "protein_xref_uniprotkb", "Q5XIH0", "protein_xref_uniprotkb", "Q5XIH0", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q6P6T5-1", "371", "Ser", "", "", "protein_xref_uniprotkb", "Q6P6T5", "protein_xref_uniprotkb", "Q6P6T5", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q6P6T5-1", "371", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q6P6T5", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9JIX3-1", "114", "Tyr", "", "", "protein_xref_uniprotkb", "Q9JIX3", "protein_xref_uniprotkb", "Q9JIX3", "Phosphotyrosine", "Phosphotyrosine", "ECO_0000250" ], [ "Q5U2Q7-1", "347", "Thr", "", "", "protein_xref_uniprotkb", "Q5U2Q7", "protein_xref_uniprotkb", "Q5U2Q7", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "P49911-1", "17", "Ser", "", "", "protein_xref_uniprotkb", "P49911", "protein_xref_uniprotkb", "P49911", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P97836-1", "372", "Ser", "", "", "protein_xref_uniprotkb", "P97836", "protein_xref_uniprotkb", "P97836", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q63767-1", "226", "Tyr", "", "", "protein_xref_uniprotkb", "Q63767", "protein_xref_uniprotkb", "Q63767", "Phosphotyrosine", "Phosphotyrosine; by SRC", "" ], [ "P11517-1", "13", "Ser", "", "", "protein_xref_uniprotkb", "P11517", "protein_xref_uniprotkb", "P11517", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P11517-1", "13", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P11517", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P97836-1", "611", "Ser", "", "", "protein_xref_uniprotkb", "P97836", "protein_xref_uniprotkb", "P97836", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P97836-1", "611", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P97836", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9JMB5-1", "211", "Ser", "", "", "protein_xref_uniprotkb", "Q9JMB5", "protein_xref_uniprotkb", "Q9JMB5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "F1M8W4-1", "439", "Ser", "", "", "protein_xref_uniprotkb", "F1M8W4", "protein_xref_uniprotkb", "F1M8W4", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "D4A208-1", "1013", "Ser", "", "", "protein_xref_uniprotkb", "D4A208", "protein_xref_uniprotkb", "D4A208", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O35303-1", "561", "Ser", "", "", "protein_xref_uniprotkb", "O35303", "protein_xref_uniprotkb", "O35303", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q5XHZ0-1", "496", "Thr", "", "", "protein_xref_uniprotkb", "Q5XHZ0", "protein_xref_uniprotkb", "Q5XHZ0", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q63190-1", "49", "Ser", "", "", "protein_xref_uniprotkb", "Q63190", "protein_xref_uniprotkb", "Q63190", "Phosphoserine", "Phosphoserine; by PKA", "" ], [ "A0A096MJN4-1", "49", "Ser", "", "", "protein_xref_uniprotkb", "A0A096MJN4", "protein_xref_uniprotkb", "A0A096MJN4", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q64542-1", "334", "Ser", "", "", "protein_xref_uniprotkb", "Q64542", "protein_xref_uniprotkb", "Q64542", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q64542-1", "334", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q64542", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "O70276-1", "105", "Thr", "", "", "protein_xref_uniprotkb", "O70276", "protein_xref_uniprotkb", "O70276", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q5U2Y6-1", "98", "Ser", "", "", "protein_xref_uniprotkb", "Q5U2Y6", "protein_xref_uniprotkb", "Q5U2Y6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q5U2Y6-1", "98", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q5U2Y6", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P47973-1", "81", "Ser", "", "", "protein_xref_uniprotkb", "P47973", "protein_xref_uniprotkb", "P47973", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9EQH1-1", "405", "Thr", "", "", "protein_xref_uniprotkb", "Q9EQH1", "protein_xref_uniprotkb", "Q9EQH1", "Phosphothreonine", "Phosphothreonine", "ECO_0000250" ], [ "Q924K2-1", "581", "Ser", "", "", "protein_xref_uniprotkb", "Q924K2", "protein_xref_uniprotkb", "Q924K2", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q924K2-1", "581", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q924K2", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P48679-1", "620", "Ser", "", "", "protein_xref_uniprotkb", "P48679", "protein_xref_uniprotkb", "P48679", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "O35141-1", "177", "Ser", "", "", "protein_xref_uniprotkb", "O35141", "protein_xref_uniprotkb", "O35141", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "O35141-1", "177", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "O35141", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q9R1N3-1", "386", "Ser", "", "", "protein_xref_uniprotkb", "Q9R1N3", "protein_xref_uniprotkb", "Q9R1N3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "P47860-1", "386", "Ser", "", "", "protein_xref_uniprotkb", "P47860", "protein_xref_uniprotkb", "P47860", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P47860-1", "386", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P47860", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q6QGW5-1", "48", "Ser", "", "", "protein_xref_uniprotkb", "Q6QGW5", "protein_xref_uniprotkb", "Q6QGW5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q5QD51-1", "22", "Ser", "", "", "protein_xref_uniprotkb", "Q5QD51", "protein_xref_uniprotkb", "Q5QD51", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q9JHI3-1", "21", "Ser", "", "", "protein_xref_uniprotkb", "Q9JHI3", "protein_xref_uniprotkb", "Q9JHI3", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q71UF4-1", "3", "Ser", "", "", "protein_xref_uniprotkb", "Q71UF4", "protein_xref_uniprotkb", "Q71UF4", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q63560-1", "951", "Ser", "", "", "protein_xref_uniprotkb", "Q63560", "protein_xref_uniprotkb", "Q63560", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q63560-1", "951", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "Q63560", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "Q923S8-1", "404", "Ser", "", "", "protein_xref_uniprotkb", "Q923S8", "protein_xref_uniprotkb", "Q923S8", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q99PF5-1", "194", "Ser", "", "", "protein_xref_uniprotkb", "Q99PF5", "protein_xref_uniprotkb", "Q99PF5", "Phosphoserine", "Phosphoserine", "ECO_0000250" ], [ "Q63185-1", "484", "Thr", "", "", "protein_xref_uniprotkb", "Q63185", "protein_xref_uniprotkb", "Q63185", "Phosphothreonine", "Phosphothreonine; by autocatalysis", "" ], [ "P08104-1", "484", "Ser", "", "", "protein_xref_uniprotkb", "P08104", "protein_xref_uniprotkb", "P08104", "Phosphoserine", "Phosphoserine", "ECO_0007744" ], [ "P08104-1", "484", "Ser", "", "", "protein_xref_pubmed", "22673903", "protein_xref_uniprotkb", "P08104", "Phosphoserine", "Phosphoserine", "ECO_0007744" ] ] }, "readme": "Name\n - Rat Phosphorylation Sites (UniProtKB)\n\nVersion\n - v-2.3.1\n\nCreated on\n - 2019-09-06T14:06:38.959200\n\nModified on\n - 2024-01-03T19:32:03\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Phosphorylation Sites (UniProtKB) dataset contains rat [taxid:10116] UniProtKB canonical accessions with information on reported and predicted phosphorylation sites with evidence in UniProtKB database. The dataset is derived from the UniProtKB Rattus norvegicus proteome release.\n\nDescription Domain\n Keywords\n - phosphorylation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore containing triples from the nt file and extracts as a csv dataset. \n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2023_10_30/uniprot-proteome-rattus-norvegicus.nt\n Output Subdomain\n Name: rat_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: rat_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.3.1/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"3989\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"2051\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"4\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"1\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"4133\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"4001\"\n Name: \"phosphorylated_residue\"\n Description: \"The amino acid that is modified by phosphorylation\"\n Unique Values: \"4\"\n Name: \"phosphorylation_annotation\"\n Description: \"The phosphorylation annotation in UniProtKB that provides more context and description of a phosphorylation event on a protein.\"\n Unique Values: \"445\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"7\"", "downloadurl": "/ln2data/releases/data/v-2.3.1/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.csv" }